Wall clock time and date at job start Tue Mar 31 2020 20:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00299 * 2 1 4 4 H 1.48494 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46718 * 299.99969 * 3 2 1 6 6 H 1.48502 * 109.47037 * 59.99422 * 3 2 1 7 7 C 1.38808 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 197.47309 * 7 2 1 9 9 N 1.36943 * 119.99970 * 17.47273 * 7 2 1 10 10 C 1.46945 * 120.54810 * 27.96626 * 9 7 2 11 11 C 1.53334 * 108.68590 * 125.67119 * 10 9 7 12 12 C 1.52108 * 109.44245 * 53.30179 * 11 10 9 13 13 C 1.54365 * 110.55316 * 177.18518 * 12 11 10 14 14 C 1.54462 * 102.87517 * 276.69836 * 13 12 11 15 15 N 1.47347 * 107.33303 * 338.50612 * 14 13 12 16 16 C 1.34782 * 125.77838 * 178.98854 * 15 14 13 17 17 O 1.21277 * 120.00354 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.99649 * 359.97438 * 16 15 14 19 19 H 1.08999 * 109.47389 * 15.00572 * 18 16 15 20 20 F 1.39893 * 109.47241 * 254.99912 * 18 16 15 21 21 C 1.53002 * 109.47148 * 134.99801 * 18 16 15 22 22 F 1.39908 * 109.46697 * 60.00136 * 21 18 16 23 23 F 1.39899 * 109.47211 * 180.02562 * 21 18 16 24 24 F 1.39903 * 109.47173 * 300.00238 * 21 18 16 25 25 C 1.47570 * 108.59685 * 358.99000 * 15 14 13 26 26 C 1.52103 * 111.59904 * 300.68869 * 12 11 10 27 27 C 1.46929 * 120.55385 * 207.97993 * 9 7 2 28 28 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.59902 * 5.90676 * 10 9 7 30 30 H 1.08998 * 109.72736 * 245.51207 * 10 9 7 31 31 H 1.09005 * 109.47750 * 293.31346 * 11 10 9 32 32 H 1.08999 * 109.48379 * 173.29904 * 11 10 9 33 33 H 1.09003 * 110.73337 * 35.04501 * 13 12 11 34 34 H 1.09000 * 110.73483 * 158.34892 * 13 12 11 35 35 H 1.08992 * 109.88093 * 97.92140 * 14 13 12 36 36 H 1.09005 * 109.87724 * 218.92297 * 14 13 12 37 37 H 1.09006 * 110.37570 * 264.47183 * 25 15 14 38 38 H 1.08991 * 110.38148 * 142.23362 * 25 15 14 39 39 H 1.09005 * 109.47237 * 179.29675 * 26 12 11 40 40 H 1.09000 * 109.47429 * 299.30893 * 26 12 11 41 41 H 1.08992 * 109.59967 * 354.08835 * 27 9 7 42 42 H 1.08998 * 109.59925 * 114.56447 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2814 9 7 1.3729 -2.3609 -0.3550 10 6 0.2340 -2.3323 -1.2831 11 6 0.5221 -3.2917 -2.4440 12 6 0.8755 -4.6640 -1.8910 13 6 1.1021 -5.6694 -3.0402 14 6 -0.3321 -6.1287 -3.3835 15 7 -1.1741 -5.8564 -2.2054 16 6 -2.4969 -6.0969 -2.1097 17 8 -3.0889 -5.8312 -1.0851 18 6 -3.2401 -6.6958 -3.2758 19 1 -2.5261 -7.1075 -3.9890 20 9 -4.0043 -5.7044 -3.9005 21 6 -4.1612 -7.8103 -2.7755 22 9 -5.0778 -7.2818 -1.8600 23 9 -4.8508 -8.3666 -3.8581 24 9 -3.3970 -8.8017 -2.1507 25 6 -0.3271 -5.2757 -1.1457 26 6 2.0951 -4.6051 -0.9841 27 6 1.8163 -3.6532 0.1853 28 1 -0.4850 0.8401 -0.0004 29 1 0.1016 -1.3213 -1.6684 30 1 -0.6713 -2.6474 -0.7643 31 1 1.3574 -2.9107 -3.0317 32 1 -0.3613 -3.3716 -3.0775 33 1 1.5656 -5.1790 -3.8962 34 1 1.7065 -6.5113 -2.7027 35 1 -0.7047 -5.5699 -4.2419 36 1 -0.3363 -7.1958 -3.6060 37 1 0.0076 -6.0530 -0.4587 38 1 -0.8724 -4.5019 -0.6054 39 1 2.3095 -5.6018 -0.5983 40 1 2.9525 -4.2427 -1.5513 41 1 2.7268 -3.5130 0.7678 42 1 1.0348 -4.0720 0.8192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040707985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:32 Heat of formation + Delta-G solvation = -203.938802 kcal Electronic energy + Delta-G solvation = -31354.051048 eV Core-core repulsion = 26448.406678 eV Total energy + Delta-G solvation = -4905.644370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.62422 -48.72013 -48.01731 -47.81829 -40.60022 -38.66159 -36.06283 -33.38138 -31.63939 -30.94324 -30.09618 -29.48892 -27.00736 -25.16575 -23.94043 -23.05829 -22.35359 -20.85242 -20.33365 -19.22289 -19.00109 -18.47428 -18.23139 -17.58657 -16.85762 -16.47495 -15.87116 -15.80231 -14.94126 -14.87584 -14.77259 -14.66858 -14.41341 -14.29790 -14.09428 -14.05974 -14.02243 -13.86012 -13.62616 -13.38971 -13.20024 -13.08094 -12.67134 -12.49519 -12.07261 -11.99139 -11.77093 -11.41424 -11.28762 -10.96804 -10.75391 -10.55283 -10.29066 -10.26102 -10.16791 -9.88631 -9.60784 -9.47017 -8.85342 -8.47910 -6.69177 -5.80433 -3.23412 1.69048 2.03358 2.48212 3.05619 3.35686 3.42194 3.43920 3.45810 3.49857 3.69991 4.07044 4.43831 4.45503 4.47897 4.64803 4.79632 5.14628 5.18291 5.31293 5.37168 5.55887 5.59785 5.74758 5.80973 5.88411 5.95225 6.02477 6.10524 6.22666 6.38212 6.53510 6.55183 6.65532 6.77358 6.90379 7.13357 7.30728 7.61882 7.64002 7.78146 8.42908 9.18961 9.82558 10.38523 11.27742 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.003088 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.655583 B = 9065.270376 C = 9618.778051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.126 4.126 12 C -0.056 4.056 13 C -0.124 4.124 14 C 0.089 3.911 15 N -0.597 5.597 16 C 0.506 3.494 17 O -0.493 6.493 18 C 0.041 3.959 19 H 0.142 0.858 20 F -0.151 7.151 21 C 0.447 3.553 22 F -0.153 7.153 23 F -0.170 7.170 24 F -0.168 7.168 25 C 0.113 3.887 26 C -0.117 4.117 27 C 0.142 3.858 28 H 0.254 0.746 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -17.874 -10.645 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.165 4.165 12 C -0.057 4.057 13 C -0.162 4.162 14 C -0.034 4.034 15 N -0.331 5.331 16 C 0.288 3.712 17 O -0.366 6.366 18 C 0.000 4.000 19 H 0.160 0.840 20 F -0.132 7.132 21 C 0.392 3.608 22 F -0.134 7.134 23 F -0.151 7.151 24 F -0.149 7.149 25 C -0.007 4.007 26 C -0.156 4.156 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.750 -17.585 -10.054 20.442 hybrid contribution 0.127 0.718 -0.194 0.755 sum -2.623 -16.867 -10.248 19.910 Atomic orbital electron populations 1.70047 1.05270 1.25468 1.53673 1.25047 0.95235 0.98436 1.00853 0.86256 0.79357 0.84056 0.77295 1.20261 1.21587 1.21726 1.19215 0.92749 0.84855 1.41576 0.91621 1.44052 1.36260 1.01422 1.49599 1.20826 0.88681 0.98434 0.87671 1.22029 1.00105 0.94264 1.00151 1.21042 0.94668 0.95494 0.94500 1.22722 0.93965 0.99531 0.99954 1.22361 0.92232 1.00471 0.88317 1.48552 1.06205 1.60924 1.17413 1.19528 0.81959 0.81393 0.88288 1.90879 1.66028 1.50075 1.29634 1.22767 0.92554 0.87160 0.97517 0.84028 1.93028 1.76179 1.61545 1.82409 1.20321 0.80995 0.82897 0.76617 1.93325 1.67486 1.85745 1.66862 1.93246 1.80713 1.86472 1.54672 1.93245 1.75211 1.63407 1.83029 1.22570 0.90907 0.97860 0.89407 1.21862 0.96049 0.99438 0.98300 1.20957 0.97751 0.87070 0.92658 0.93625 0.89343 0.96253 0.92090 0.93373 0.89597 0.90414 0.90801 0.91050 0.91079 0.88632 0.92742 0.91558 0.92605 0.96374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.79 9.57 -15.06 -0.14 -6.93 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.12 2.98 -172.13 -0.51 -14.64 16 10 C 0.17 3.89 5.01 -3.63 -0.02 3.87 16 11 C -0.13 -2.18 4.83 -27.01 -0.13 -2.31 16 12 C -0.06 -0.79 0.54 -154.11 -0.08 -0.88 16 13 C -0.12 -1.22 5.89 -25.25 -0.15 -1.37 16 14 C 0.09 0.80 5.56 -2.81 -0.02 0.79 16 15 N -0.60 -7.76 3.33 -170.54 -0.57 -8.33 16 16 C 0.51 7.25 6.93 -10.98 -0.08 7.17 16 17 O -0.49 -9.14 15.87 5.56 0.09 -9.05 16 18 C 0.04 0.44 3.56 -27.88 -0.10 0.34 16 19 H 0.14 0.90 6.75 -51.93 -0.35 0.55 16 20 F -0.15 -1.86 17.03 2.25 0.04 -1.82 16 21 C 0.45 5.06 2.86 37.16 0.11 5.17 16 22 F -0.15 -2.16 15.95 2.25 0.04 -2.12 16 23 F -0.17 -1.73 17.30 2.25 0.04 -1.69 16 24 F -0.17 -1.85 17.02 2.25 0.04 -1.81 16 25 C 0.11 1.70 4.87 -2.86 -0.01 1.69 16 26 C -0.12 -1.74 4.83 -27.01 -0.13 -1.87 16 27 C 0.14 2.77 6.25 -3.63 -0.02 2.75 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 2.32 6.01 -51.93 -0.31 2.01 16 30 H 0.02 0.49 6.58 -51.93 -0.34 0.14 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 33 H 0.09 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.08 0.66 8.00 -51.93 -0.42 0.25 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 37 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 38 H 0.10 1.80 6.10 -51.93 -0.32 1.49 16 39 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.37 7.63 -51.93 -0.40 -0.03 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -31.51 346.66 -6.32 -37.83 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.43 Total: -2.95 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.86 Total: 8.40 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.46 Total: -48.38 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.15 Total: -7.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.51 -6.32 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040707985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.109 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds