Wall clock time and date at job start Tue Mar 31 2020 20:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00299 * 2 1 4 4 H 1.48494 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46718 * 299.99969 * 3 2 1 6 6 H 1.48502 * 109.47037 * 59.99422 * 3 2 1 7 7 C 1.38808 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 197.47309 * 7 2 1 9 9 N 1.36943 * 119.99970 * 17.47273 * 7 2 1 10 10 C 1.46945 * 120.54810 * 27.96626 * 9 7 2 11 11 C 1.53334 * 108.68590 * 125.67119 * 10 9 7 12 12 C 1.52108 * 109.44245 * 53.30179 * 11 10 9 13 13 C 1.54365 * 110.55316 * 177.18518 * 12 11 10 14 14 C 1.54462 * 102.87517 * 276.69836 * 13 12 11 15 15 N 1.47347 * 107.33303 * 338.50612 * 14 13 12 16 16 C 1.34782 * 125.77838 * 178.98854 * 15 14 13 17 17 O 1.21277 * 120.00354 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.99649 * 359.97438 * 16 15 14 19 19 H 1.08999 * 109.47389 * 15.00572 * 18 16 15 20 20 F 1.39893 * 109.47241 * 254.99912 * 18 16 15 21 21 C 1.53002 * 109.47148 * 134.99801 * 18 16 15 22 22 F 1.39908 * 109.46697 * 60.00136 * 21 18 16 23 23 F 1.39899 * 109.47211 * 180.02562 * 21 18 16 24 24 F 1.39903 * 109.47173 * 300.00238 * 21 18 16 25 25 C 1.47570 * 108.59685 * 358.99000 * 15 14 13 26 26 C 1.52103 * 111.59904 * 300.68869 * 12 11 10 27 27 C 1.46929 * 120.55385 * 207.97993 * 9 7 2 28 28 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.59902 * 5.90676 * 10 9 7 30 30 H 1.08998 * 109.72736 * 245.51207 * 10 9 7 31 31 H 1.09005 * 109.47750 * 293.31346 * 11 10 9 32 32 H 1.08999 * 109.48379 * 173.29904 * 11 10 9 33 33 H 1.09003 * 110.73337 * 35.04501 * 13 12 11 34 34 H 1.09000 * 110.73483 * 158.34892 * 13 12 11 35 35 H 1.08992 * 109.88093 * 97.92140 * 14 13 12 36 36 H 1.09005 * 109.87724 * 218.92297 * 14 13 12 37 37 H 1.09006 * 110.37570 * 264.47183 * 25 15 14 38 38 H 1.08991 * 110.38148 * 142.23362 * 25 15 14 39 39 H 1.09005 * 109.47237 * 179.29675 * 26 12 11 40 40 H 1.09000 * 109.47429 * 299.30893 * 26 12 11 41 41 H 1.08992 * 109.59967 * 354.08835 * 27 9 7 42 42 H 1.08998 * 109.59925 * 114.56447 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2814 9 7 1.3729 -2.3609 -0.3550 10 6 0.2340 -2.3323 -1.2831 11 6 0.5221 -3.2917 -2.4440 12 6 0.8755 -4.6640 -1.8910 13 6 1.1021 -5.6694 -3.0402 14 6 -0.3321 -6.1287 -3.3835 15 7 -1.1741 -5.8564 -2.2054 16 6 -2.4969 -6.0969 -2.1097 17 8 -3.0889 -5.8312 -1.0851 18 6 -3.2401 -6.6958 -3.2758 19 1 -2.5261 -7.1075 -3.9890 20 9 -4.0043 -5.7044 -3.9005 21 6 -4.1612 -7.8103 -2.7755 22 9 -5.0778 -7.2818 -1.8600 23 9 -4.8508 -8.3666 -3.8581 24 9 -3.3970 -8.8017 -2.1507 25 6 -0.3271 -5.2757 -1.1457 26 6 2.0951 -4.6051 -0.9841 27 6 1.8163 -3.6532 0.1853 28 1 -0.4850 0.8401 -0.0004 29 1 0.1016 -1.3213 -1.6684 30 1 -0.6713 -2.6474 -0.7643 31 1 1.3574 -2.9107 -3.0317 32 1 -0.3613 -3.3716 -3.0775 33 1 1.5656 -5.1790 -3.8962 34 1 1.7065 -6.5113 -2.7027 35 1 -0.7047 -5.5699 -4.2419 36 1 -0.3363 -7.1958 -3.6060 37 1 0.0076 -6.0530 -0.4587 38 1 -0.8724 -4.5019 -0.6054 39 1 2.3095 -5.6018 -0.5983 40 1 2.9525 -4.2427 -1.5513 41 1 2.7268 -3.5130 0.7678 42 1 1.0348 -4.0720 0.8192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040707985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:31 Heat of formation + Delta-G solvation = -223.874600 kcal Electronic energy + Delta-G solvation = -31354.915530 eV Core-core repulsion = 26448.406678 eV Total energy + Delta-G solvation = -4906.508851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.51059 -49.61929 -48.88770 -48.75122 -41.70716 -39.91288 -37.52777 -34.93149 -33.08662 -32.06272 -31.65616 -30.67463 -28.34348 -26.66402 -25.11980 -24.20304 -23.89734 -22.30384 -21.28344 -20.12463 -19.89869 -19.78289 -19.31585 -18.66182 -18.29593 -17.69665 -16.92954 -16.89528 -16.70197 -15.81181 -15.71221 -15.67104 -15.63338 -15.35993 -15.29736 -15.24952 -15.00570 -14.98799 -14.86294 -14.74557 -14.51787 -14.44831 -13.88846 -13.66931 -13.40869 -13.09154 -13.03265 -12.86337 -12.67284 -12.61092 -12.33342 -12.10912 -11.86654 -11.83471 -11.47968 -11.32124 -11.08501 -11.00036 -10.53292 -9.87401 -8.66918 -7.87408 -5.33323 0.74199 1.02482 1.44842 1.46602 1.52256 1.57410 2.18746 2.50805 2.57547 2.61768 2.90353 3.24067 3.27292 3.55190 3.57114 3.62452 3.72097 3.86748 4.24798 4.25214 4.39211 4.53336 4.61102 4.66548 4.72671 4.73585 4.82027 4.92083 5.04008 5.08775 5.11146 5.28763 5.34461 5.39539 5.42293 5.53105 5.64946 5.78043 6.13197 6.38612 6.57953 7.14513 7.87474 8.38015 9.18394 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.003088 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.655583 B = 9065.270376 C = 9618.778051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.110 4.110 12 C -0.056 4.056 13 C -0.109 4.109 14 C 0.077 3.923 15 N -0.594 5.594 16 C 0.495 3.505 17 O -0.552 6.552 18 C 0.052 3.948 19 H 0.199 0.801 20 F -0.161 7.161 21 C 0.447 3.553 22 F -0.176 7.176 23 F -0.161 7.161 24 F -0.165 7.165 25 C 0.115 3.885 26 C -0.103 4.103 27 C 0.134 3.866 28 H 0.247 0.753 29 H 0.046 0.954 30 H -0.018 1.018 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -20.534 -13.322 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.149 4.149 12 C -0.057 4.057 13 C -0.147 4.147 14 C -0.043 4.043 15 N -0.326 5.326 16 C 0.279 3.721 17 O -0.429 6.429 18 C 0.011 3.989 19 H 0.215 0.785 20 F -0.141 7.141 21 C 0.392 3.608 22 F -0.157 7.157 23 F -0.142 7.142 24 F -0.146 7.146 25 C -0.007 4.007 26 C -0.142 4.142 27 C 0.009 3.991 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.000 1.000 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -0.382 -20.289 -12.774 23.978 hybrid contribution -0.591 1.518 0.726 1.784 sum -0.972 -18.770 -12.047 22.325 Atomic orbital electron populations 1.70234 1.06938 1.25622 1.55814 1.25826 0.95890 1.01698 1.01531 0.85226 0.78856 0.79897 0.76599 1.18571 1.21781 1.22350 1.19602 0.93085 0.86076 1.40125 0.91176 1.44335 1.36133 1.02404 1.50360 1.20557 0.87397 0.97627 0.89170 1.21774 1.00575 0.94943 0.97597 1.20955 0.93785 0.94659 0.96297 1.22708 0.95064 0.98756 0.98153 1.22809 0.90879 1.03749 0.86862 1.48667 1.06106 1.59623 1.18202 1.20184 0.82314 0.80907 0.88646 1.90854 1.67334 1.52573 1.32187 1.22899 0.92725 0.86280 0.96974 0.78471 1.93012 1.76590 1.62183 1.82310 1.20422 0.80818 0.83204 0.76391 1.93283 1.68433 1.86151 1.67867 1.93266 1.80573 1.86314 1.54018 1.93248 1.75009 1.63275 1.83068 1.22364 0.91023 0.96977 0.90288 1.21719 0.96404 0.99774 0.96303 1.21168 0.96952 0.86221 0.94771 0.94373 0.93519 1.00039 0.91610 0.92576 0.87849 0.87591 0.89066 0.86450 0.89874 0.93958 0.88985 0.90909 0.92699 0.97714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.42 11.20 21.65 0.24 -57.18 16 2 C -0.05 -3.08 4.90 84.86 0.42 -2.67 16 3 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.26 -14.14 9.57 84.03 0.80 -13.33 16 8 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 9 N -0.61 -30.04 2.98 -698.50 -2.08 -32.13 16 10 C 0.18 8.62 5.01 86.41 0.43 9.05 16 11 C -0.11 -3.73 4.83 30.41 0.15 -3.59 16 12 C -0.06 -1.44 0.54 -51.92 -0.03 -1.47 16 13 C -0.11 -1.52 5.89 31.55 0.19 -1.34 16 14 C 0.08 0.97 5.56 86.71 0.48 1.45 16 15 N -0.59 -14.04 3.33 -811.85 -2.70 -16.74 16 16 C 0.50 13.71 6.93 87.66 0.61 14.32 16 17 O -0.55 -21.32 15.87 -3.02 -0.05 -21.36 16 18 C 0.05 0.97 3.56 29.85 0.11 1.08 16 19 H 0.20 1.42 6.75 -2.39 -0.02 1.40 16 20 F -0.16 -3.67 17.03 44.97 0.77 -2.91 16 21 C 0.45 9.37 2.86 71.98 0.21 9.58 16 22 F -0.18 -5.02 15.95 44.97 0.72 -4.30 16 23 F -0.16 -2.91 17.30 44.97 0.78 -2.13 16 24 F -0.16 -3.29 17.02 44.97 0.77 -2.53 16 25 C 0.12 3.38 4.87 86.56 0.42 3.80 16 26 C -0.10 -2.78 4.83 30.41 0.15 -2.63 16 27 C 0.13 5.24 6.25 86.41 0.54 5.78 16 28 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 29 H 0.05 2.62 6.01 -2.39 -0.01 2.60 16 30 H -0.02 -1.00 6.58 -2.39 -0.02 -1.02 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 1.79 7.84 -2.39 -0.02 1.77 16 33 H 0.10 1.20 8.01 -2.39 -0.02 1.18 16 34 H 0.11 1.00 8.00 -2.39 -0.02 0.98 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 0.54 7.92 -2.38 -0.02 0.52 16 37 H 0.08 2.21 7.97 -2.38 -0.02 2.19 16 38 H 0.04 1.71 6.10 -2.39 -0.01 1.69 16 39 H 0.09 1.86 8.09 -2.38 -0.02 1.84 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 42 H 0.00 0.20 7.63 -2.39 -0.02 0.18 16 Total: -1.00 -76.93 346.66 5.99 -70.93 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.06 Total: 1.11 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 4.47 Total: 20.04 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.54 Total: -106.05 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 9 Polarization: -14.89 SS G_CDS: 3.03 Total: -11.86 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.93 5.99 -70.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040707985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.941 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds