Wall clock time and date at job start Tue Mar 31 2020 20:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99656 * 2 1 4 4 H 1.48504 * 109.46701 * 239.99749 * 3 2 1 5 5 H 1.48493 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46957 * 120.00051 * 3 2 1 7 7 C 1.38818 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 163.08592 * 7 2 1 9 9 N 1.36936 * 120.00192 * 343.08679 * 7 2 1 10 10 C 1.46922 * 120.62820 * 331.82789 * 9 7 2 11 11 C 1.53196 * 108.77713 * 233.58675 * 10 9 7 12 12 C 1.53047 * 109.31064 * 305.36938 * 11 10 9 13 13 F 1.39894 * 109.45805 * 301.34246 * 12 11 10 14 14 F 1.39896 * 109.44334 * 181.37316 * 12 11 10 15 15 C 1.53042 * 109.53823 * 61.36171 * 12 11 10 16 16 H 1.09007 * 109.49495 * 58.62103 * 15 12 11 17 17 C 1.52992 * 109.49771 * 178.67819 * 15 12 11 18 18 N 1.46496 * 109.47303 * 185.00084 * 17 15 12 19 19 C 1.34781 * 120.00238 * 180.02562 * 18 17 15 20 20 O 1.21276 * 120.00034 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.00002 * 180.02562 * 19 18 17 22 22 C 1.53776 * 113.61285 * 179.97438 * 21 19 18 23 23 C 1.53773 * 87.08022 * 139.98145 * 22 21 19 24 24 F 1.39903 * 113.61586 * 89.12026 * 23 22 21 25 25 F 1.39907 * 113.61457 * 220.02033 * 23 22 21 26 26 C 1.53774 * 87.08423 * 334.56829 * 23 22 21 27 27 C 1.46924 * 120.62776 * 151.80813 * 9 7 2 28 28 H 0.96993 * 120.00362 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.58689 * 113.80254 * 10 9 7 30 30 H 1.09000 * 109.59050 * 353.38117 * 10 9 7 31 31 H 1.08993 * 109.50099 * 185.41808 * 11 10 9 32 32 H 1.08996 * 109.51980 * 65.33574 * 11 10 9 33 33 H 1.09004 * 109.46832 * 65.00467 * 17 15 12 34 34 H 1.08992 * 109.47483 * 305.00657 * 17 15 12 35 35 H 0.97004 * 120.00263 * 359.97438 * 18 17 15 36 36 H 1.08995 * 112.90758 * 48.74724 * 21 19 18 37 37 H 1.09002 * 113.61652 * 254.53434 * 22 21 19 38 38 H 1.09004 * 113.61311 * 25.43564 * 22 21 19 39 39 H 1.09006 * 113.61292 * 270.88685 * 26 23 22 40 40 H 1.08997 * 113.69559 * 139.98837 * 26 23 22 41 41 H 1.08998 * 109.58873 * 6.62739 * 27 9 7 42 42 H 1.09002 * 109.58651 * 246.19715 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2261 -2.3400 1.2678 11 6 0.4974 -3.3194 2.4142 12 6 0.8119 -4.7010 1.8358 13 9 -0.2665 -5.1374 1.0589 14 9 1.0294 -5.6050 2.8811 15 6 2.0672 -4.6175 0.9644 16 1 2.9024 -4.2544 1.5635 17 6 2.3996 -6.0055 0.4134 18 7 3.6656 -5.9488 -0.3216 19 6 4.1601 -7.0618 -0.8990 20 8 3.5571 -8.1103 -0.8098 21 6 5.4628 -7.0036 -1.6545 22 6 5.8892 -8.3549 -2.2520 23 6 6.3435 -7.5726 -3.4955 24 9 7.6689 -7.1301 -3.4260 25 9 6.0468 -8.2161 -4.7018 26 6 5.3146 -6.5003 -3.1000 27 6 1.8137 -3.6529 -0.1983 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6771 -2.6405 0.7366 30 1 0.0993 -1.3343 1.6686 31 1 -0.3831 -3.3843 3.0533 32 1 1.3470 -2.9682 2.9998 33 1 1.6042 -6.3300 -0.2577 34 1 2.4897 -6.7120 1.2384 35 1 4.1478 -5.1102 -0.3933 36 1 6.2547 -6.5037 -1.0969 37 1 6.7078 -8.8318 -1.7129 38 1 5.0555 -9.0309 -2.4419 39 1 4.3237 -6.6693 -3.5218 40 1 5.6679 -5.4795 -3.2452 41 1 2.7344 -3.5134 -0.7648 42 1 1.0400 -4.0604 -0.8490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046924415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:45 Heat of formation + Delta-G solvation = -199.299900 kcal Electronic energy + Delta-G solvation = -30386.383032 eV Core-core repulsion = 25480.939820 eV Total energy + Delta-G solvation = -4905.443212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.10363 -48.58596 -47.43285 -46.53752 -40.32448 -37.76561 -36.96431 -35.08096 -32.77051 -31.00777 -30.28625 -27.13267 -26.62691 -25.36432 -24.87743 -22.56965 -21.72245 -21.17585 -20.13818 -19.58062 -18.43811 -17.26255 -17.02478 -16.88683 -16.78032 -16.49434 -16.18533 -15.67310 -15.40684 -15.28838 -15.04787 -14.59475 -14.29997 -14.05319 -13.92565 -13.70248 -13.61703 -13.32528 -13.17288 -13.02471 -12.88742 -12.84714 -12.29391 -12.27351 -11.86402 -11.83005 -11.74310 -11.63924 -11.58456 -11.27945 -10.86812 -10.80789 -10.69415 -10.60161 -10.13403 -10.07811 -9.98320 -9.70386 -9.15248 -8.66409 -6.95727 -5.99136 -3.44583 2.37756 2.88665 3.14280 3.26639 3.33599 3.34201 3.42899 3.87325 3.95021 4.05774 4.19022 4.31772 4.54460 4.60845 4.75173 4.83339 4.89427 5.04137 5.10498 5.14251 5.21768 5.24314 5.33997 5.35047 5.47220 5.56703 5.73647 5.83799 5.92319 6.09279 6.21014 6.24435 6.28738 6.36636 6.61613 7.04569 7.34801 7.39523 7.59262 8.04499 8.21247 8.97087 9.59560 10.14811 11.09947 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.003302 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.287349 B = 8477.752555 C =10448.072086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.213 7.213 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.124 3.876 18 N -0.717 5.717 19 C 0.527 3.473 20 O -0.537 6.537 21 C -0.134 4.134 22 C -0.141 4.141 23 C 0.255 3.745 24 F -0.178 7.178 25 F -0.188 7.188 26 C -0.150 4.150 27 C 0.153 3.847 28 H 0.258 0.742 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.406 0.594 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 -11.650 -0.964 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.263 3.737 13 F -0.180 7.180 14 F -0.194 7.194 15 C -0.177 4.177 16 H 0.120 0.880 17 C 0.000 4.000 18 N -0.369 5.369 19 C 0.312 3.688 20 O -0.413 6.413 21 C -0.155 4.155 22 C -0.179 4.179 23 C 0.219 3.781 24 F -0.159 7.159 25 F -0.168 7.168 26 C -0.188 4.188 27 C 0.026 3.974 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.235 -12.259 -0.940 15.377 hybrid contribution 0.691 1.165 -0.034 1.355 sum 9.925 -11.094 -0.974 14.918 Atomic orbital electron populations 1.70002 1.05351 1.26117 1.52676 1.25093 0.95301 0.98637 1.00070 0.86333 0.78943 0.83020 0.78229 1.20731 1.21504 1.20847 1.19096 0.92612 0.84440 1.43240 0.91362 1.44076 1.35772 1.01471 1.49836 1.20843 0.89370 0.98115 0.87258 1.23275 1.03392 0.92947 1.02267 1.21026 0.84844 0.87527 0.80258 1.92967 1.58112 1.91124 1.75792 1.92957 1.95167 1.71215 1.60108 1.22981 0.97170 0.96858 1.00695 0.87969 1.21360 0.85678 0.96574 0.96417 1.45939 1.24515 1.11949 1.54450 1.19994 0.86104 0.83747 0.78934 1.90721 1.60603 1.29844 1.60169 1.22555 0.97579 0.99292 0.96067 1.23995 1.03800 0.97251 0.92896 1.21979 0.79314 0.94288 0.82558 1.93031 1.36631 1.89893 1.96362 1.93029 1.92660 1.82613 1.48536 1.24047 1.00661 1.00379 0.93726 1.20910 0.98913 0.86352 0.91244 0.93207 0.94937 0.88144 0.90519 0.89570 0.90546 0.90903 0.75922 0.85424 0.88273 0.85552 0.86282 0.87589 0.91620 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 11.20 55.49 0.62 -23.63 16 2 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 3 Si 0.91 20.03 29.59 -169.99 -5.03 15.00 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.26 -6.51 9.58 -15.06 -0.14 -6.65 16 8 H 0.07 1.61 7.89 -52.49 -0.41 1.19 16 9 N -0.59 -13.15 2.99 -172.32 -0.52 -13.66 16 10 C 0.17 3.70 5.10 -3.71 -0.02 3.68 16 11 C -0.18 -3.15 5.62 -26.61 -0.15 -3.30 16 12 C 0.30 5.08 1.63 -26.69 -0.04 5.04 16 13 F -0.20 -3.68 15.73 2.25 0.04 -3.64 16 14 F -0.21 -3.54 16.41 2.25 0.04 -3.51 16 15 C -0.16 -2.37 2.03 -90.50 -0.18 -2.56 16 16 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 17 C 0.12 1.71 4.83 -4.05 -0.02 1.70 16 18 N -0.72 -8.12 5.33 -60.30 -0.32 -8.44 16 19 C 0.53 6.14 7.36 -10.98 -0.08 6.06 16 20 O -0.54 -8.25 15.90 5.56 0.09 -8.16 16 21 C -0.13 -1.10 4.13 -90.96 -0.38 -1.48 16 22 C -0.14 -1.18 7.19 -25.93 -0.19 -1.37 16 23 C 0.26 2.31 3.27 -25.93 -0.08 2.23 16 24 F -0.18 -1.77 17.38 2.25 0.04 -1.73 16 25 F -0.19 -2.04 17.41 2.25 0.04 -2.00 16 26 C -0.15 -1.19 7.42 -25.92 -0.19 -1.38 16 27 C 0.15 2.76 5.40 -3.71 -0.02 2.74 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.03 0.77 7.92 -51.92 -0.41 0.35 16 30 H 0.10 2.43 6.06 -51.93 -0.31 2.12 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.17 7.97 -51.93 -0.41 0.75 16 34 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 35 H 0.41 3.80 7.71 -40.82 -0.31 3.49 16 36 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.13 1.18 7.43 -51.93 -0.39 0.80 16 39 H 0.12 0.98 8.09 -51.93 -0.42 0.56 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 42 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -29.36 354.65 -6.77 -36.13 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.52 Total: 3.45 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.58 Total: 4.85 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.22 Total: -45.74 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 9 Polarization: -11.03 SS G_CDS: 0.15 Total: -10.88 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.36 -6.77 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046924415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.169 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds