Wall clock time and date at job start Tue Mar 31 2020 20:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99656 * 2 1 4 4 H 1.48504 * 109.46701 * 239.99749 * 3 2 1 5 5 H 1.48493 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46957 * 120.00051 * 3 2 1 7 7 C 1.38818 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 163.08592 * 7 2 1 9 9 N 1.36936 * 120.00192 * 343.08679 * 7 2 1 10 10 C 1.46922 * 120.62820 * 331.82789 * 9 7 2 11 11 C 1.53196 * 108.77713 * 233.58675 * 10 9 7 12 12 C 1.53047 * 109.31064 * 305.36938 * 11 10 9 13 13 F 1.39894 * 109.45805 * 301.34246 * 12 11 10 14 14 F 1.39896 * 109.44334 * 181.37316 * 12 11 10 15 15 C 1.53042 * 109.53823 * 61.36171 * 12 11 10 16 16 H 1.09007 * 109.49495 * 58.62103 * 15 12 11 17 17 C 1.52992 * 109.49771 * 178.67819 * 15 12 11 18 18 N 1.46496 * 109.47303 * 185.00084 * 17 15 12 19 19 C 1.34781 * 120.00238 * 180.02562 * 18 17 15 20 20 O 1.21276 * 120.00034 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.00002 * 180.02562 * 19 18 17 22 22 C 1.53776 * 113.61285 * 179.97438 * 21 19 18 23 23 C 1.53773 * 87.08022 * 139.98145 * 22 21 19 24 24 F 1.39903 * 113.61586 * 89.12026 * 23 22 21 25 25 F 1.39907 * 113.61457 * 220.02033 * 23 22 21 26 26 C 1.53774 * 87.08423 * 334.56829 * 23 22 21 27 27 C 1.46924 * 120.62776 * 151.80813 * 9 7 2 28 28 H 0.96993 * 120.00362 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.58689 * 113.80254 * 10 9 7 30 30 H 1.09000 * 109.59050 * 353.38117 * 10 9 7 31 31 H 1.08993 * 109.50099 * 185.41808 * 11 10 9 32 32 H 1.08996 * 109.51980 * 65.33574 * 11 10 9 33 33 H 1.09004 * 109.46832 * 65.00467 * 17 15 12 34 34 H 1.08992 * 109.47483 * 305.00657 * 17 15 12 35 35 H 0.97004 * 120.00263 * 359.97438 * 18 17 15 36 36 H 1.08995 * 112.90758 * 48.74724 * 21 19 18 37 37 H 1.09002 * 113.61652 * 254.53434 * 22 21 19 38 38 H 1.09004 * 113.61311 * 25.43564 * 22 21 19 39 39 H 1.09006 * 113.61292 * 270.88685 * 26 23 22 40 40 H 1.08997 * 113.69559 * 139.98837 * 26 23 22 41 41 H 1.08998 * 109.58873 * 6.62739 * 27 9 7 42 42 H 1.09002 * 109.58651 * 246.19715 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2261 -2.3400 1.2678 11 6 0.4974 -3.3194 2.4142 12 6 0.8119 -4.7010 1.8358 13 9 -0.2665 -5.1374 1.0589 14 9 1.0294 -5.6050 2.8811 15 6 2.0672 -4.6175 0.9644 16 1 2.9024 -4.2544 1.5635 17 6 2.3996 -6.0055 0.4134 18 7 3.6656 -5.9488 -0.3216 19 6 4.1601 -7.0618 -0.8990 20 8 3.5571 -8.1103 -0.8098 21 6 5.4628 -7.0036 -1.6545 22 6 5.8892 -8.3549 -2.2520 23 6 6.3435 -7.5726 -3.4955 24 9 7.6689 -7.1301 -3.4260 25 9 6.0468 -8.2161 -4.7018 26 6 5.3146 -6.5003 -3.1000 27 6 1.8137 -3.6529 -0.1983 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6771 -2.6405 0.7366 30 1 0.0993 -1.3343 1.6686 31 1 -0.3831 -3.3843 3.0533 32 1 1.3470 -2.9682 2.9998 33 1 1.6042 -6.3300 -0.2577 34 1 2.4897 -6.7120 1.2384 35 1 4.1478 -5.1102 -0.3933 36 1 6.2547 -6.5037 -1.0969 37 1 6.7078 -8.8318 -1.7129 38 1 5.0555 -9.0309 -2.4419 39 1 4.3237 -6.6693 -3.5218 40 1 5.6679 -5.4795 -3.2452 41 1 2.7344 -3.5134 -0.7648 42 1 1.0400 -4.0604 -0.8490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046924415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:44 Heat of formation + Delta-G solvation = -216.147139 kcal Electronic energy + Delta-G solvation = -30387.113583 eV Core-core repulsion = 25480.939820 eV Total energy + Delta-G solvation = -4906.173763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.98529 -49.84848 -48.19474 -47.94264 -41.24017 -39.08912 -37.94266 -36.34602 -34.37416 -32.39046 -31.96860 -28.17665 -27.26433 -27.06212 -26.04519 -24.05752 -23.09712 -22.15547 -21.24130 -20.76779 -19.34530 -18.79520 -18.29358 -17.90025 -17.72534 -17.30247 -17.25957 -17.03062 -16.86211 -16.44950 -16.32716 -15.83462 -15.38968 -15.17925 -15.05786 -14.91365 -14.75300 -14.57254 -14.47641 -14.26987 -14.21519 -13.80143 -13.64102 -13.24940 -13.17699 -13.08350 -13.02529 -13.00901 -12.56389 -12.50780 -12.43252 -12.30396 -12.16819 -11.89341 -11.64431 -11.46050 -11.33934 -10.92583 -10.54546 -10.18504 -8.78670 -7.89321 -5.36290 1.47701 1.52911 1.55257 1.61134 1.95595 2.44083 2.51284 2.74978 2.81491 3.17352 3.18587 3.24622 3.26555 3.28704 3.42782 3.53672 3.61576 3.92462 3.94407 4.12413 4.27618 4.28928 4.38534 4.47404 4.51887 4.56912 4.65008 4.69371 4.73103 4.78283 4.86973 4.90275 5.07963 5.11492 5.29083 5.33187 5.60267 5.67955 6.35357 6.46384 7.09977 7.14733 7.78073 8.30668 9.18685 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.003302 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.287349 B = 8477.752555 C =10448.072086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.169 4.169 12 C 0.298 3.702 13 F -0.211 7.211 14 F -0.207 7.207 15 C -0.138 4.138 16 H 0.121 0.879 17 C 0.135 3.865 18 N -0.709 5.709 19 C 0.528 3.472 20 O -0.577 6.577 21 C -0.122 4.122 22 C -0.141 4.141 23 C 0.251 3.749 24 F -0.182 7.182 25 F -0.201 7.201 26 C -0.145 4.145 27 C 0.154 3.846 28 H 0.251 0.749 29 H 0.003 0.997 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.418 0.582 36 H 0.158 0.842 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.244 -11.791 -0.488 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.209 4.209 12 C 0.261 3.739 13 F -0.192 7.192 14 F -0.188 7.188 15 C -0.159 4.159 16 H 0.139 0.861 17 C 0.010 3.990 18 N -0.361 5.361 19 C 0.315 3.685 20 O -0.456 6.456 21 C -0.143 4.143 22 C -0.179 4.179 23 C 0.214 3.786 24 F -0.163 7.163 25 F -0.182 7.182 26 C -0.183 4.183 27 C 0.028 3.972 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.176 0.824 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 11.714 -12.409 -0.466 17.071 hybrid contribution -0.091 1.137 -0.206 1.159 sum 11.623 -11.272 -0.672 16.205 Atomic orbital electron populations 1.70164 1.06848 1.26125 1.54951 1.25812 0.95866 1.01606 1.00829 0.85360 0.77499 0.79164 0.78494 1.19994 1.22850 1.20082 1.19535 0.93272 0.85153 1.41396 0.89990 1.44311 1.35579 1.02451 1.50430 1.20550 0.88501 0.97623 0.88198 1.23098 1.04672 0.92303 1.00778 1.21089 0.85207 0.87075 0.80509 1.92952 1.58887 1.91207 1.76135 1.92968 1.95107 1.70893 1.59857 1.22780 0.96857 0.96859 0.99434 0.86101 1.21085 0.86464 0.95301 0.96199 1.45832 1.23609 1.12677 1.53953 1.20535 0.86732 0.82918 0.78316 1.90714 1.61946 1.31347 1.61601 1.22597 0.96262 0.99540 0.95938 1.23988 1.03852 0.97319 0.92733 1.22131 0.79337 0.94924 0.82173 1.93024 1.36960 1.89931 1.96337 1.93003 1.92769 1.82979 1.49431 1.24054 1.00072 1.01083 0.93089 1.20989 0.99089 0.84940 0.92163 0.94035 0.97916 0.90886 0.89196 0.88183 0.92218 0.91053 0.74419 0.82422 0.86712 0.86863 0.86831 0.85685 0.89517 0.96722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.64 11.20 21.65 0.24 -51.39 16 2 C -0.05 -2.30 4.92 84.86 0.42 -1.88 16 3 Si 0.97 40.87 29.59 68.60 2.03 42.90 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.26 -12.66 9.58 84.03 0.81 -11.85 16 8 H 0.08 3.65 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -26.55 2.99 -699.09 -2.09 -28.64 16 10 C 0.18 7.80 5.10 86.36 0.44 8.25 16 11 C -0.17 -5.75 5.62 30.68 0.17 -5.58 16 12 C 0.30 9.64 1.63 30.62 0.05 9.69 16 13 F -0.21 -7.73 15.73 44.97 0.71 -7.02 16 14 F -0.21 -6.43 16.41 44.97 0.74 -5.69 16 15 C -0.14 -3.92 2.03 -10.72 -0.02 -3.94 16 16 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 17 C 0.13 3.48 4.83 86.38 0.42 3.90 16 18 N -0.71 -14.19 5.33 -463.08 -2.47 -16.65 16 19 C 0.53 11.18 7.36 87.66 0.64 11.82 16 20 O -0.58 -17.15 15.90 -3.02 -0.05 -17.20 16 21 C -0.12 -1.67 4.13 -11.01 -0.05 -1.71 16 22 C -0.14 -2.09 7.19 31.12 0.22 -1.87 16 23 C 0.25 4.07 3.27 31.12 0.10 4.17 16 24 F -0.18 -3.17 17.38 44.97 0.78 -2.39 16 25 F -0.20 -4.17 17.41 44.97 0.78 -3.39 16 26 C -0.14 -1.93 7.42 31.12 0.23 -1.70 16 27 C 0.15 5.34 5.40 86.36 0.47 5.80 16 28 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.00 0.13 7.92 -2.38 -0.02 0.11 16 30 H 0.07 3.62 6.06 -2.39 -0.01 3.61 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.06 1.77 7.97 -2.39 -0.02 1.75 16 34 H 0.07 1.92 7.63 -2.39 -0.02 1.90 16 35 H 0.42 6.31 7.71 -92.71 -0.71 5.60 16 36 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 2.04 7.43 -2.39 -0.02 2.02 16 39 H 0.11 1.68 8.09 -2.38 -0.02 1.66 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.09 2.61 7.14 -2.39 -0.02 2.59 16 42 H 0.01 0.57 7.92 -2.39 -0.02 0.55 16 Total: -1.00 -63.86 354.65 4.93 -58.93 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.35 Total: 15.45 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 3.90 Total: 15.10 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -4.32 Total: -96.69 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 9 Polarization: -21.50 SS G_CDS: 3.01 Total: -18.49 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -63.86 4.93 -58.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046924415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.220 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds