Wall clock time and date at job start Tue Mar 31 2020 20:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00064 * 3 2 1 6 6 H 1.48503 * 109.47053 * 59.99719 * 3 2 1 7 7 C 1.38816 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 197.38118 * 7 2 1 9 9 N 1.36938 * 120.00107 * 17.37804 * 7 2 1 10 10 C 1.46931 * 120.62940 * 27.65603 * 9 7 2 11 11 C 1.53193 * 108.77293 * 126.41435 * 10 9 7 12 12 C 1.53042 * 109.31355 * 54.63604 * 11 10 9 13 13 F 1.39900 * 109.45977 * 178.61852 * 12 11 10 14 14 F 1.39893 * 109.45713 * 58.65498 * 12 11 10 15 15 C 1.53050 * 109.53717 * 298.63446 * 12 11 10 16 16 H 1.08996 * 109.52362 * 301.39519 * 15 12 11 17 17 C 1.53000 * 109.49291 * 181.31333 * 15 12 11 18 18 N 1.46505 * 109.46488 * 175.16376 * 17 15 12 19 19 C 1.34779 * 119.99734 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.99852 * 179.72587 * 19 18 17 22 22 C 1.53784 * 113.61333 * 277.76787 * 21 19 18 23 23 C 1.53781 * 87.07924 * 220.01887 * 22 21 19 24 24 F 1.39891 * 113.61819 * 270.88122 * 23 22 21 25 25 F 1.39909 * 113.61371 * 139.98158 * 23 22 21 26 26 C 1.53776 * 87.08470 * 25.43247 * 23 22 21 27 27 C 1.46921 * 120.63289 * 207.68292 * 9 7 2 28 28 H 0.96998 * 119.99427 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.59044 * 246.20098 * 10 9 7 30 30 H 1.08999 * 109.58295 * 6.63301 * 10 9 7 31 31 H 1.08991 * 109.50125 * 174.59057 * 11 10 9 32 32 H 1.09009 * 109.49740 * 294.68731 * 11 10 9 33 33 H 1.09000 * 109.46933 * 55.17045 * 17 15 12 34 34 H 1.08997 * 109.47231 * 295.15951 * 17 15 12 35 35 H 0.97000 * 120.00453 * 359.97438 * 18 17 15 36 36 H 1.08999 * 112.85542 * 49.07846 * 21 19 18 37 37 H 1.08999 * 113.61320 * 334.56475 * 22 21 19 38 38 H 1.08997 * 113.61472 * 105.47183 * 22 21 19 39 39 H 1.08999 * 113.61607 * 220.01545 * 26 23 22 40 40 H 1.09013 * 113.69232 * 89.12148 * 26 23 22 41 41 H 1.08999 * 109.58877 * 113.79517 * 27 9 7 42 42 H 1.09005 * 109.58876 * 353.37381 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2234 0.2800 9 7 1.3724 -2.3612 -0.3531 10 6 0.2278 -2.3348 -1.2741 11 6 0.5008 -3.3050 -2.4277 12 6 0.8186 -4.6902 -1.8597 13 9 1.0375 -5.5862 -2.9115 14 9 -0.2584 -5.1346 -1.0854 15 6 2.0743 -4.6102 -0.9884 16 1 2.9085 -4.2407 -1.5847 17 6 2.4099 -6.0016 -0.4476 18 7 3.6743 -5.9466 0.2904 19 6 4.1717 -7.0627 0.8592 20 8 3.5722 -8.1124 0.7604 21 6 5.4753 -7.0075 1.6130 22 6 6.7150 -7.0898 0.7066 23 6 7.3423 -7.9952 1.7797 24 9 8.0478 -7.2932 2.7627 25 9 8.0665 -9.0700 1.2526 26 6 5.9082 -8.3634 2.1952 27 6 1.8192 -3.6547 0.1815 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6743 -2.6411 -0.7447 30 1 0.0987 -1.3265 -1.6675 31 1 -0.3799 -3.3673 -3.0669 32 1 1.3496 -2.9475 -3.0108 33 1 2.5041 -6.7012 -1.2781 34 1 1.6143 -6.3339 0.2192 35 1 4.1540 -5.1071 0.3690 36 1 5.5133 -6.1908 2.3338 37 1 6.5307 -7.5978 -0.2400 38 1 7.2300 -6.1371 0.5837 39 1 5.7720 -8.4390 3.2740 40 1 5.5022 -9.2196 1.6563 41 1 1.0468 -4.0687 0.8297 42 1 2.7399 -3.5174 0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046924417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:49 Heat of formation + Delta-G solvation = -199.237503 kcal Electronic energy + Delta-G solvation = -30319.447383 eV Core-core repulsion = 25414.006877 eV Total energy + Delta-G solvation = -4905.440506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.13142 -48.58770 -47.46144 -46.53860 -40.33125 -37.77426 -36.97243 -35.08374 -32.77326 -31.00833 -30.28982 -27.14000 -26.65829 -25.36959 -24.88385 -22.57101 -21.73200 -21.18841 -20.13138 -19.60245 -18.44889 -17.27061 -17.04535 -16.89172 -16.79268 -16.52734 -16.16359 -15.63015 -15.53860 -15.27856 -14.99432 -14.62294 -14.32956 -14.02538 -13.96161 -13.72866 -13.61613 -13.32806 -13.17928 -13.05268 -12.88676 -12.84668 -12.30989 -12.28225 -11.91909 -11.82054 -11.74613 -11.62878 -11.58658 -11.29408 -10.89056 -10.83508 -10.69753 -10.56678 -10.13450 -10.08104 -9.96135 -9.70795 -9.15458 -8.67335 -6.96643 -5.99549 -3.44244 2.37236 2.88250 3.11549 3.25476 3.34015 3.35552 3.40410 3.85476 3.92551 4.03988 4.18009 4.31570 4.54219 4.60748 4.75250 4.83000 4.89230 5.02437 5.06570 5.13526 5.18265 5.21581 5.33443 5.35116 5.46963 5.56544 5.71741 5.83543 5.92145 6.09103 6.20784 6.24347 6.28485 6.36466 6.61631 7.04570 7.34629 7.39573 7.59764 8.04309 8.20533 8.96774 9.59412 10.14347 11.09555 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003126 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.946570 B = 8954.393330 C =10740.836850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.213 7.213 14 F -0.199 7.199 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.124 3.876 18 N -0.717 5.717 19 C 0.527 3.473 20 O -0.537 6.537 21 C -0.134 4.134 22 C -0.149 4.149 23 C 0.255 3.745 24 F -0.178 7.178 25 F -0.188 7.188 26 C -0.142 4.142 27 C 0.153 3.847 28 H 0.257 0.743 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.406 0.594 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.033 0.967 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 -11.908 -0.017 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.043 3.957 11 C -0.219 4.219 12 C 0.263 3.737 13 F -0.194 7.194 14 F -0.180 7.180 15 C -0.177 4.177 16 H 0.120 0.880 17 C 0.000 4.000 18 N -0.368 5.368 19 C 0.312 3.688 20 O -0.413 6.413 21 C -0.155 4.155 22 C -0.188 4.188 23 C 0.219 3.781 24 F -0.158 7.158 25 F -0.169 7.169 26 C -0.180 4.180 27 C 0.025 3.975 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.051 0.949 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.858 -12.529 -0.066 15.942 hybrid contribution 0.668 1.167 0.028 1.345 sum 10.526 -11.362 -0.038 15.488 Atomic orbital electron populations 1.70029 1.05351 1.25869 1.52875 1.25085 0.95306 0.98655 1.00190 0.86201 0.79334 0.83616 0.77439 1.20143 1.21391 1.21567 1.19186 0.92832 0.84461 1.42716 0.91234 1.44104 1.35738 1.01336 1.50025 1.20851 0.89340 0.98292 0.87169 1.23272 1.03381 0.92870 1.02339 1.21028 0.84875 0.87622 0.80131 1.92958 1.95149 1.71682 1.59661 1.92967 1.58209 1.90896 1.75922 1.22978 0.97156 0.96828 1.00722 0.87966 1.21364 0.85727 0.96542 0.96396 1.45939 1.24518 1.11720 1.54670 1.19988 0.85957 0.83759 0.79069 1.90723 1.60650 1.29868 1.60094 1.22567 0.92868 1.00753 0.99328 1.24036 0.94381 1.01843 0.98522 1.21973 0.86063 0.82783 0.87311 1.93034 1.81063 1.78565 1.63173 1.93026 1.80912 1.56659 1.86305 1.23998 0.90401 0.98948 1.04632 1.20912 0.98914 0.86382 0.91242 0.93325 0.94938 0.88081 0.90511 0.89565 0.90921 0.90519 0.75916 0.85250 0.86442 0.87708 0.88175 0.85568 0.94940 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 11.19 55.49 0.62 -23.65 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 20.04 29.59 -169.99 -5.03 15.01 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.47 9.59 -15.06 -0.14 -6.61 16 8 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 9 N -0.59 -13.17 2.99 -172.32 -0.52 -13.69 16 10 C 0.17 3.69 5.11 -3.71 -0.02 3.67 16 11 C -0.18 -3.14 5.62 -26.61 -0.15 -3.29 16 12 C 0.30 5.07 1.63 -26.68 -0.04 5.03 16 13 F -0.21 -3.53 16.41 2.25 0.04 -3.49 16 14 F -0.20 -3.68 15.72 2.25 0.04 -3.65 16 15 C -0.16 -2.37 2.03 -90.50 -0.18 -2.55 16 16 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 17 C 0.12 1.71 4.83 -4.04 -0.02 1.69 16 18 N -0.72 -8.10 5.33 -60.29 -0.32 -8.43 16 19 C 0.53 6.13 7.35 -10.99 -0.08 6.05 16 20 O -0.54 -8.24 15.90 5.56 0.09 -8.15 16 21 C -0.13 -1.10 4.13 -90.96 -0.38 -1.48 16 22 C -0.15 -1.09 7.42 -25.92 -0.19 -1.28 16 23 C 0.26 2.24 3.27 -25.92 -0.08 2.15 16 24 F -0.18 -1.74 17.38 2.25 0.04 -1.70 16 25 F -0.19 -1.96 17.41 2.25 0.04 -1.92 16 26 C -0.14 -1.18 7.19 -25.92 -0.19 -1.37 16 27 C 0.15 2.76 5.40 -3.71 -0.02 2.74 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.03 0.77 7.92 -51.93 -0.41 0.35 16 30 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 33 H 0.07 1.04 7.63 -51.93 -0.40 0.65 16 34 H 0.08 1.17 7.97 -51.93 -0.41 0.76 16 35 H 0.41 3.80 7.70 -40.82 -0.31 3.49 16 36 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.12 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.13 1.17 7.43 -51.92 -0.39 0.78 16 41 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 42 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -29.45 354.60 -6.77 -36.22 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.52 Total: 3.24 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.59 Total: 4.86 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.22 Total: -45.76 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 9 Polarization: -10.91 SS G_CDS: 0.15 Total: -10.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.45 -6.77 -36.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046924417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.020 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds