Wall clock time and date at job start Tue Mar 31 2020 20:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00064 * 3 2 1 6 6 H 1.48503 * 109.47053 * 59.99719 * 3 2 1 7 7 C 1.38816 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 197.38118 * 7 2 1 9 9 N 1.36938 * 120.00107 * 17.37804 * 7 2 1 10 10 C 1.46931 * 120.62940 * 27.65603 * 9 7 2 11 11 C 1.53193 * 108.77293 * 126.41435 * 10 9 7 12 12 C 1.53042 * 109.31355 * 54.63604 * 11 10 9 13 13 F 1.39900 * 109.45977 * 178.61852 * 12 11 10 14 14 F 1.39893 * 109.45713 * 58.65498 * 12 11 10 15 15 C 1.53050 * 109.53717 * 298.63446 * 12 11 10 16 16 H 1.08996 * 109.52362 * 301.39519 * 15 12 11 17 17 C 1.53000 * 109.49291 * 181.31333 * 15 12 11 18 18 N 1.46505 * 109.46488 * 175.16376 * 17 15 12 19 19 C 1.34779 * 119.99734 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.99852 * 179.72587 * 19 18 17 22 22 C 1.53784 * 113.61333 * 277.76787 * 21 19 18 23 23 C 1.53781 * 87.07924 * 220.01887 * 22 21 19 24 24 F 1.39891 * 113.61819 * 270.88122 * 23 22 21 25 25 F 1.39909 * 113.61371 * 139.98158 * 23 22 21 26 26 C 1.53776 * 87.08470 * 25.43247 * 23 22 21 27 27 C 1.46921 * 120.63289 * 207.68292 * 9 7 2 28 28 H 0.96998 * 119.99427 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.59044 * 246.20098 * 10 9 7 30 30 H 1.08999 * 109.58295 * 6.63301 * 10 9 7 31 31 H 1.08991 * 109.50125 * 174.59057 * 11 10 9 32 32 H 1.09009 * 109.49740 * 294.68731 * 11 10 9 33 33 H 1.09000 * 109.46933 * 55.17045 * 17 15 12 34 34 H 1.08997 * 109.47231 * 295.15951 * 17 15 12 35 35 H 0.97000 * 120.00453 * 359.97438 * 18 17 15 36 36 H 1.08999 * 112.85542 * 49.07846 * 21 19 18 37 37 H 1.08999 * 113.61320 * 334.56475 * 22 21 19 38 38 H 1.08997 * 113.61472 * 105.47183 * 22 21 19 39 39 H 1.08999 * 113.61607 * 220.01545 * 26 23 22 40 40 H 1.09013 * 113.69232 * 89.12148 * 26 23 22 41 41 H 1.08999 * 109.58877 * 113.79517 * 27 9 7 42 42 H 1.09005 * 109.58876 * 353.37381 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2234 0.2800 9 7 1.3724 -2.3612 -0.3531 10 6 0.2278 -2.3348 -1.2741 11 6 0.5008 -3.3050 -2.4277 12 6 0.8186 -4.6902 -1.8597 13 9 1.0375 -5.5862 -2.9115 14 9 -0.2584 -5.1346 -1.0854 15 6 2.0743 -4.6102 -0.9884 16 1 2.9085 -4.2407 -1.5847 17 6 2.4099 -6.0016 -0.4476 18 7 3.6743 -5.9466 0.2904 19 6 4.1717 -7.0627 0.8592 20 8 3.5722 -8.1124 0.7604 21 6 5.4753 -7.0075 1.6130 22 6 6.7150 -7.0898 0.7066 23 6 7.3423 -7.9952 1.7797 24 9 8.0478 -7.2932 2.7627 25 9 8.0665 -9.0700 1.2526 26 6 5.9082 -8.3634 2.1952 27 6 1.8192 -3.6547 0.1815 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6743 -2.6411 -0.7447 30 1 0.0987 -1.3265 -1.6675 31 1 -0.3799 -3.3673 -3.0669 32 1 1.3496 -2.9475 -3.0108 33 1 2.5041 -6.7012 -1.2781 34 1 1.6143 -6.3339 0.2192 35 1 4.1540 -5.1071 0.3690 36 1 5.5133 -6.1908 2.3338 37 1 6.5307 -7.5978 -0.2400 38 1 7.2300 -6.1371 0.5837 39 1 5.7720 -8.4390 3.2740 40 1 5.5022 -9.2196 1.6563 41 1 1.0468 -4.0687 0.8297 42 1 2.7399 -3.5174 0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046924417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:48 Heat of formation + Delta-G solvation = -216.173370 kcal Electronic energy + Delta-G solvation = -30320.181778 eV Core-core repulsion = 25414.006877 eV Total energy + Delta-G solvation = -4906.174901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98460 -49.84771 -48.19296 -47.94128 -41.23969 -39.09275 -37.93925 -36.34715 -34.37623 -32.38981 -31.97232 -28.17736 -27.26294 -27.06846 -26.04508 -24.05866 -23.09820 -22.15748 -21.22368 -20.78723 -19.33652 -18.80117 -18.29342 -17.90326 -17.72195 -17.31921 -17.23552 -17.02397 -16.87952 -16.44308 -16.34615 -15.82695 -15.38293 -15.16709 -15.05490 -14.95492 -14.73788 -14.57193 -14.47473 -14.26461 -14.20352 -13.80603 -13.63182 -13.26397 -13.17416 -13.10014 -13.05745 -12.98619 -12.64004 -12.47993 -12.44396 -12.24522 -12.14448 -11.89117 -11.61976 -11.45872 -11.34302 -10.92645 -10.56874 -10.18480 -8.79860 -7.89853 -5.36123 1.47810 1.50867 1.54694 1.63314 1.95969 2.44221 2.50828 2.75092 2.81488 3.17393 3.18630 3.24000 3.26053 3.28794 3.42944 3.53538 3.61248 3.91832 3.95981 4.11929 4.27781 4.29373 4.39248 4.47434 4.51857 4.56932 4.64481 4.69189 4.73257 4.78240 4.86820 4.90194 5.07739 5.11681 5.29072 5.33176 5.60205 5.68217 6.34856 6.46441 7.09528 7.14797 7.77692 8.30012 9.18439 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003126 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.946570 B = 8954.393330 C =10740.836850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.261 4.261 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.298 3.702 13 F -0.207 7.207 14 F -0.211 7.211 15 C -0.138 4.138 16 H 0.122 0.878 17 C 0.134 3.866 18 N -0.709 5.709 19 C 0.528 3.472 20 O -0.577 6.577 21 C -0.125 4.125 22 C -0.139 4.139 23 C 0.250 3.750 24 F -0.183 7.183 25 F -0.200 7.200 26 C -0.143 4.143 27 C 0.154 3.846 28 H 0.250 0.750 29 H 0.003 0.997 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.418 0.582 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.015 0.985 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -11.980 -0.296 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.226 1.226 7 C -0.391 4.391 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.050 3.950 11 C -0.208 4.208 12 C 0.261 3.739 13 F -0.188 7.188 14 F -0.192 7.192 15 C -0.159 4.159 16 H 0.140 0.860 17 C 0.010 3.990 18 N -0.361 5.361 19 C 0.315 3.685 20 O -0.456 6.456 21 C -0.146 4.146 22 C -0.177 4.177 23 C 0.214 3.786 24 F -0.164 7.164 25 F -0.181 7.181 26 C -0.182 4.182 27 C 0.028 3.972 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.171 0.829 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.033 0.967 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.203 -12.611 -0.346 17.551 hybrid contribution -0.076 1.111 0.143 1.123 sum 12.127 -11.500 -0.203 16.713 Atomic orbital electron populations 1.70183 1.06856 1.25971 1.55121 1.25806 0.95886 1.01622 1.00983 0.85233 0.79035 0.79890 0.76388 1.18341 1.22081 1.22613 1.19612 0.93447 0.85169 1.40846 0.89913 1.44338 1.35548 1.02318 1.50596 1.20559 0.88473 0.97768 0.88151 1.23095 1.04674 0.92252 1.00804 1.21091 0.85235 0.87164 0.80390 1.92969 1.95087 1.71357 1.59397 1.92952 1.58991 1.90983 1.76269 1.22776 0.96859 0.96841 0.99418 0.86043 1.21090 0.86485 0.95275 0.96198 1.45832 1.23614 1.12451 1.54168 1.20526 0.86587 0.82921 0.78441 1.90714 1.62039 1.31355 1.61516 1.22597 0.91069 1.01400 0.99579 1.24036 0.93310 1.02519 0.97829 1.22123 0.85772 0.82880 0.87807 1.93023 1.81220 1.78597 1.63516 1.93003 1.81204 1.57387 1.86486 1.24003 0.90149 0.98759 1.05260 1.20991 0.99066 0.84958 0.92210 0.94053 0.97920 0.90833 0.89198 0.88138 0.91010 0.92249 0.74418 0.82874 0.86351 0.85469 0.87132 0.86714 0.96741 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.70 11.19 21.65 0.24 -51.46 16 2 C -0.05 -2.40 4.91 84.86 0.42 -1.98 16 3 Si 0.97 40.92 29.59 68.60 2.03 42.95 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.30 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -12.53 9.59 84.03 0.81 -11.72 16 8 H 0.08 3.69 7.89 -2.91 -0.02 3.67 16 9 N -0.61 -26.56 2.99 -699.10 -2.09 -28.66 16 10 C 0.18 7.77 5.11 86.36 0.44 8.21 16 11 C -0.17 -5.73 5.62 30.67 0.17 -5.56 16 12 C 0.30 9.62 1.63 30.62 0.05 9.67 16 13 F -0.21 -6.40 16.41 44.97 0.74 -5.66 16 14 F -0.21 -7.73 15.72 44.97 0.71 -7.02 16 15 C -0.14 -3.89 2.03 -10.71 -0.02 -3.92 16 16 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 17 C 0.13 3.47 4.83 86.38 0.42 3.89 16 18 N -0.71 -14.15 5.33 -463.06 -2.47 -16.62 16 19 C 0.53 11.18 7.35 87.65 0.64 11.83 16 20 O -0.58 -17.15 15.90 -3.03 -0.05 -17.20 16 21 C -0.13 -1.72 4.13 -11.01 -0.05 -1.76 16 22 C -0.14 -1.60 7.42 31.12 0.23 -1.37 16 23 C 0.25 3.87 3.27 31.12 0.10 3.98 16 24 F -0.18 -3.16 17.38 44.97 0.78 -2.38 16 25 F -0.20 -3.90 17.41 44.97 0.78 -3.11 16 26 C -0.14 -2.15 7.19 31.12 0.22 -1.93 16 27 C 0.15 5.33 5.40 86.36 0.47 5.79 16 28 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 29 H 0.00 0.13 7.92 -2.39 -0.02 0.11 16 30 H 0.07 3.65 6.04 -2.39 -0.01 3.64 16 31 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.10 3.15 8.14 -2.38 -0.02 3.14 16 33 H 0.07 1.92 7.63 -2.39 -0.02 1.90 16 34 H 0.06 1.77 7.97 -2.39 -0.02 1.75 16 35 H 0.42 6.30 7.70 -92.71 -0.71 5.58 16 36 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 2.04 7.43 -2.38 -0.02 2.02 16 41 H 0.01 0.56 7.92 -2.39 -0.02 0.55 16 42 H 0.09 2.61 7.13 -2.38 -0.02 2.59 16 Total: -1.00 -64.05 354.60 4.93 -59.12 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.35 Total: 14.91 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 3.90 Total: 15.12 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -4.32 Total: -96.73 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 9 Polarization: -21.18 SS G_CDS: 3.01 Total: -18.17 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -64.05 4.93 -59.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046924417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.050 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds