Wall clock time and date at job start Tue Mar 31 2020 20:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48509 * 109.46924 * 264.98346 * 3 2 1 5 5 H 1.48500 * 109.47488 * 144.98466 * 3 2 1 6 6 H 1.48503 * 109.47320 * 24.97827 * 3 2 1 7 7 C 1.38812 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99617 * 162.38455 * 7 2 1 9 9 N 1.36936 * 119.99899 * 342.38754 * 7 2 1 10 10 C 1.46927 * 120.63108 * 332.62254 * 9 7 2 11 11 C 1.53188 * 108.77455 * 233.58941 * 10 9 7 12 12 C 1.53040 * 109.31368 * 305.36227 * 11 10 9 13 13 F 1.39898 * 109.46090 * 181.38873 * 12 11 10 14 14 F 1.39901 * 109.46219 * 301.36612 * 12 11 10 15 15 C 1.53042 * 109.53577 * 61.36819 * 12 11 10 16 16 H 1.09005 * 109.49726 * 58.61850 * 15 12 11 17 17 C 1.52999 * 109.49739 * 178.68453 * 15 12 11 18 18 N 1.46498 * 109.47141 * 185.00125 * 17 15 12 19 19 C 1.34773 * 120.00122 * 179.97438 * 18 17 15 20 20 O 1.21282 * 120.00012 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99915 * 179.97438 * 19 18 17 22 22 H 1.08993 * 115.55581 * 325.67530 * 21 19 18 23 23 C 1.53005 * 117.49463 * 111.38196 * 21 19 18 24 24 C 1.52997 * 60.00095 * 107.49003 * 23 21 19 25 25 H 1.09001 * 117.49810 * 252.50790 * 24 23 21 26 26 C 1.53002 * 117.52123 * 107.48085 * 24 23 21 27 27 F 1.39902 * 109.46875 * 231.37079 * 26 24 23 28 28 F 1.39897 * 109.47031 * 351.36703 * 26 24 23 29 29 C 1.46928 * 120.62979 * 152.34496 * 9 7 2 30 30 H 0.96994 * 120.00226 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58572 * 353.38099 * 10 9 7 32 32 H 1.09003 * 109.58262 * 113.79878 * 10 9 7 33 33 H 1.08994 * 109.50138 * 65.31726 * 11 10 9 34 34 H 1.09003 * 109.49246 * 185.41415 * 11 10 9 35 35 H 1.09002 * 109.46874 * 304.99507 * 17 15 12 36 36 H 1.08995 * 109.47381 * 64.99946 * 17 15 12 37 37 H 0.97005 * 120.00004 * 359.97438 * 18 17 15 38 38 H 1.09006 * 117.49767 * 214.97850 * 23 21 19 39 39 H 1.08999 * 117.50371 * 0.02562 * 23 21 19 40 40 H 1.08996 * 109.47222 * 111.37290 * 26 24 23 41 41 H 1.08995 * 109.58564 * 246.20201 * 29 9 7 42 42 H 1.08999 * 109.58339 * 6.62871 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9852 -1.3948 5 1 3.4907 1.4732 0.8033 6 1 1.3986 2.6811 0.5912 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2241 -0.2825 9 7 1.3738 -2.3601 0.3599 10 6 0.2287 -2.3304 1.2800 11 6 0.5022 -3.2942 2.4388 12 6 0.8222 -4.6818 1.8783 13 9 1.0415 -5.5721 2.9349 14 9 -0.2535 -5.1317 1.1053 15 6 2.0783 -4.6048 1.0074 16 1 2.9115 -4.2312 1.6028 17 6 2.4162 -5.9984 0.4741 18 7 3.6830 -5.9465 -0.2600 19 6 4.1825 -7.0650 -0.8219 20 8 3.5831 -8.1145 -0.7203 21 6 5.4853 -7.0114 -1.5776 22 1 5.6736 -6.0880 -2.1252 23 6 6.6896 -7.7255 -0.9605 24 6 5.9995 -8.3147 -2.1923 25 1 5.3955 -9.2109 -2.0503 26 6 6.7386 -8.2221 -3.5288 27 9 5.8902 -7.6678 -4.4933 28 9 7.8692 -7.4116 -3.3812 29 6 1.8192 -3.6552 -0.1721 30 1 -0.4850 0.8400 -0.0004 31 1 0.0978 -1.3202 1.6679 32 1 -0.6728 -2.6407 0.7515 33 1 1.3500 -2.9324 3.0206 34 1 -0.3789 -3.3542 3.0777 35 1 2.5080 -6.6942 1.3082 36 1 1.6229 -6.3342 -0.1936 37 1 4.1622 -5.1071 -0.3416 38 1 7.6706 -7.2717 -1.1021 39 1 6.5396 -8.2343 -0.0084 40 1 7.0450 -9.2193 -3.8445 41 1 1.0448 -4.0713 -0.8165 42 1 2.7381 -3.5195 -0.7424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046932374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:53 Heat of formation + Delta-G solvation = -198.755614 kcal Electronic energy + Delta-G solvation = -30140.596055 eV Core-core repulsion = 25235.176445 eV Total energy + Delta-G solvation = -4905.419610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.25975 -48.55783 -47.24722 -46.50979 -40.10999 -37.62280 -36.68099 -34.99479 -32.72885 -30.95329 -30.25821 -28.00082 -26.13621 -25.23212 -23.85376 -22.42569 -21.63722 -21.28976 -20.31926 -19.57437 -18.43105 -17.41020 -17.29763 -17.22000 -16.82805 -16.53388 -16.30754 -15.53636 -15.42040 -15.33768 -14.87658 -14.36316 -14.23827 -14.06516 -13.72314 -13.63249 -13.57587 -13.29828 -13.14371 -12.91241 -12.82064 -12.65881 -12.52631 -12.24945 -11.71538 -11.65904 -11.61726 -11.56728 -11.26933 -11.10862 -10.84151 -10.74923 -10.66718 -10.57665 -10.09983 -10.05535 -9.94750 -9.67959 -9.09192 -8.63481 -6.93383 -5.96419 -3.40667 2.28854 2.89121 3.19677 3.28499 3.36284 3.37148 3.50150 3.89362 4.01072 4.17886 4.27156 4.34847 4.46514 4.58972 4.64828 4.80733 4.83773 4.86553 4.92912 5.17344 5.24770 5.25940 5.37748 5.48218 5.54604 5.59630 5.60636 5.87253 5.95724 6.12281 6.23758 6.28919 6.34553 6.40002 6.65836 7.07399 7.41530 7.42837 7.62559 8.12123 8.23721 9.00003 9.62667 10.17720 11.12683 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003177 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.966125 B = 8811.340938 C =10684.362404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.169 3.831 11 C -0.178 4.178 12 C 0.300 3.700 13 F -0.214 7.214 14 F -0.199 7.199 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.125 3.875 18 N -0.715 5.715 19 C 0.544 3.456 20 O -0.542 6.542 21 C -0.170 4.170 22 H 0.132 0.868 23 C -0.126 4.126 24 C -0.193 4.193 25 H 0.146 0.854 26 C 0.293 3.707 27 F -0.200 7.200 28 F -0.204 7.204 29 C 0.153 3.847 30 H 0.257 0.743 31 H 0.102 0.898 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.406 0.594 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.955 -14.179 -0.668 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.043 3.957 11 C -0.218 4.218 12 C 0.264 3.736 13 F -0.195 7.195 14 F -0.180 7.180 15 C -0.177 4.177 16 H 0.121 0.879 17 C 0.001 3.999 18 N -0.366 5.366 19 C 0.330 3.670 20 O -0.420 6.420 21 C -0.191 4.191 22 H 0.150 0.850 23 C -0.164 4.164 24 C -0.213 4.213 25 H 0.163 0.837 26 C 0.239 3.761 27 F -0.181 7.181 28 F -0.185 7.185 29 C 0.025 3.975 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.241 0.759 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.051 0.949 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.364 -14.740 -0.616 18.622 hybrid contribution 0.415 1.278 -0.068 1.346 sum 11.779 -13.462 -0.684 17.901 Atomic orbital electron populations 1.70016 1.05353 1.25995 1.52837 1.25074 0.95290 0.98637 1.00214 0.86295 0.79112 0.83247 0.77970 1.21144 1.20420 1.21438 1.19134 0.92906 0.84548 1.42639 0.91296 1.44114 1.35772 1.01295 1.50003 1.20852 0.89304 0.98392 0.87111 1.23268 1.03350 0.92816 1.02389 1.21031 0.84910 0.87682 0.80027 1.92955 1.95147 1.72040 1.59330 1.92968 1.58306 1.90746 1.75984 1.23057 0.97112 0.96789 1.00727 0.87939 1.21352 0.85602 0.96544 0.96413 1.45839 1.24296 1.11549 1.54911 1.19423 0.85303 0.83678 0.78609 1.90704 1.60796 1.30107 1.60346 1.22255 0.94574 0.98115 1.04203 0.85000 1.23118 0.96133 1.00691 0.96416 1.23507 1.04641 0.99890 0.93221 0.83669 1.21269 0.76937 0.91525 0.86357 1.93027 1.71767 1.87924 1.65364 1.92972 1.52786 1.76758 1.96031 1.21003 0.98940 0.86381 0.91140 0.93277 0.88047 0.94964 0.89559 0.90523 0.90986 0.90571 0.75871 0.86418 0.87078 0.86173 0.94881 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.67 11.18 55.49 0.62 -24.05 16 2 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.63 9.59 -15.06 -0.14 -6.78 16 8 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -13.54 2.99 -172.05 -0.51 -14.05 16 10 C 0.17 3.77 5.11 -3.71 -0.02 3.75 16 11 C -0.18 -3.22 5.62 -26.61 -0.15 -3.37 16 12 C 0.30 5.24 1.63 -26.69 -0.04 5.20 16 13 F -0.21 -3.64 16.41 2.25 0.04 -3.60 16 14 F -0.20 -3.79 15.72 2.25 0.04 -3.75 16 15 C -0.16 -2.49 2.04 -90.27 -0.18 -2.67 16 16 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.12 1.85 4.83 -4.04 -0.02 1.83 16 18 N -0.71 -9.08 5.33 -60.30 -0.32 -9.40 16 19 C 0.54 7.17 7.61 -10.99 -0.08 7.08 16 20 O -0.54 -8.98 16.26 5.56 0.09 -8.89 16 21 C -0.17 -1.68 5.84 -91.77 -0.54 -2.22 16 22 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.13 -0.96 9.62 -26.73 -0.26 -1.21 16 24 C -0.19 -1.63 5.67 -90.62 -0.51 -2.14 16 25 H 0.15 1.27 7.67 -51.93 -0.40 0.88 16 26 C 0.29 2.22 5.67 37.16 0.21 2.43 16 27 F -0.20 -2.11 17.29 2.25 0.04 -2.07 16 28 F -0.20 -1.80 15.92 2.25 0.04 -1.76 16 29 C 0.15 2.89 5.42 -3.48 -0.02 2.87 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.10 2.50 6.02 -51.93 -0.31 2.19 16 32 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 36 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 37 H 0.41 4.41 7.72 -40.82 -0.32 4.10 16 38 H 0.12 0.76 7.22 -51.93 -0.38 0.38 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 42 H 0.07 1.16 7.16 -51.93 -0.37 0.79 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -30.44 357.84 -6.95 -37.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.49 Total: 4.57 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.84 Total: 4.88 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.22 Total: -47.50 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 0.15 Total: -11.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.44 -6.95 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046932374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.364 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds