Wall clock time and date at job start Tue Mar 31 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48509 * 109.46924 * 264.98346 * 3 2 1 5 5 H 1.48500 * 109.47488 * 144.98466 * 3 2 1 6 6 H 1.48503 * 109.47320 * 24.97827 * 3 2 1 7 7 C 1.38812 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99617 * 162.38455 * 7 2 1 9 9 N 1.36936 * 119.99899 * 342.38754 * 7 2 1 10 10 C 1.46927 * 120.63108 * 332.62254 * 9 7 2 11 11 C 1.53188 * 108.77455 * 233.58941 * 10 9 7 12 12 C 1.53040 * 109.31368 * 305.36227 * 11 10 9 13 13 F 1.39898 * 109.46090 * 181.38873 * 12 11 10 14 14 F 1.39901 * 109.46219 * 301.36612 * 12 11 10 15 15 C 1.53042 * 109.53577 * 61.36819 * 12 11 10 16 16 H 1.09005 * 109.49726 * 58.61850 * 15 12 11 17 17 C 1.52999 * 109.49739 * 178.68453 * 15 12 11 18 18 N 1.46498 * 109.47141 * 185.00125 * 17 15 12 19 19 C 1.34773 * 120.00122 * 179.97438 * 18 17 15 20 20 O 1.21282 * 120.00012 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99915 * 179.97438 * 19 18 17 22 22 H 1.08993 * 115.55581 * 325.67530 * 21 19 18 23 23 C 1.53005 * 117.49463 * 111.38196 * 21 19 18 24 24 C 1.52997 * 60.00095 * 107.49003 * 23 21 19 25 25 H 1.09001 * 117.49810 * 252.50790 * 24 23 21 26 26 C 1.53002 * 117.52123 * 107.48085 * 24 23 21 27 27 F 1.39902 * 109.46875 * 231.37079 * 26 24 23 28 28 F 1.39897 * 109.47031 * 351.36703 * 26 24 23 29 29 C 1.46928 * 120.62979 * 152.34496 * 9 7 2 30 30 H 0.96994 * 120.00226 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58572 * 353.38099 * 10 9 7 32 32 H 1.09003 * 109.58262 * 113.79878 * 10 9 7 33 33 H 1.08994 * 109.50138 * 65.31726 * 11 10 9 34 34 H 1.09003 * 109.49246 * 185.41415 * 11 10 9 35 35 H 1.09002 * 109.46874 * 304.99507 * 17 15 12 36 36 H 1.08995 * 109.47381 * 64.99946 * 17 15 12 37 37 H 0.97005 * 120.00004 * 359.97438 * 18 17 15 38 38 H 1.09006 * 117.49767 * 214.97850 * 23 21 19 39 39 H 1.08999 * 117.50371 * 0.02562 * 23 21 19 40 40 H 1.08996 * 109.47222 * 111.37290 * 26 24 23 41 41 H 1.08995 * 109.58564 * 246.20201 * 29 9 7 42 42 H 1.08999 * 109.58339 * 6.62871 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9852 -1.3948 5 1 3.4907 1.4732 0.8033 6 1 1.3986 2.6811 0.5912 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2241 -0.2825 9 7 1.3738 -2.3601 0.3599 10 6 0.2287 -2.3304 1.2800 11 6 0.5022 -3.2942 2.4388 12 6 0.8222 -4.6818 1.8783 13 9 1.0415 -5.5721 2.9349 14 9 -0.2535 -5.1317 1.1053 15 6 2.0783 -4.6048 1.0074 16 1 2.9115 -4.2312 1.6028 17 6 2.4162 -5.9984 0.4741 18 7 3.6830 -5.9465 -0.2600 19 6 4.1825 -7.0650 -0.8219 20 8 3.5831 -8.1145 -0.7203 21 6 5.4853 -7.0114 -1.5776 22 1 5.6736 -6.0880 -2.1252 23 6 6.6896 -7.7255 -0.9605 24 6 5.9995 -8.3147 -2.1923 25 1 5.3955 -9.2109 -2.0503 26 6 6.7386 -8.2221 -3.5288 27 9 5.8902 -7.6678 -4.4933 28 9 7.8692 -7.4116 -3.3812 29 6 1.8192 -3.6552 -0.1721 30 1 -0.4850 0.8400 -0.0004 31 1 0.0978 -1.3202 1.6679 32 1 -0.6728 -2.6407 0.7515 33 1 1.3500 -2.9324 3.0206 34 1 -0.3789 -3.3542 3.0777 35 1 2.5080 -6.6942 1.3082 36 1 1.6229 -6.3342 -0.1936 37 1 4.1622 -5.1071 -0.3416 38 1 7.6706 -7.2717 -1.1021 39 1 6.5396 -8.2343 -0.0084 40 1 7.0450 -9.2193 -3.8445 41 1 1.0448 -4.0713 -0.8165 42 1 2.7381 -3.5195 -0.7424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046932374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:52 Heat of formation + Delta-G solvation = -216.493077 kcal Electronic energy + Delta-G solvation = -30141.365209 eV Core-core repulsion = 25235.176445 eV Total energy + Delta-G solvation = -4906.188764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.00788 -49.90941 -47.96437 -47.91717 -41.13033 -39.06778 -37.62478 -36.32544 -34.39666 -32.40080 -31.99775 -28.74440 -27.40604 -26.96667 -24.91449 -23.97424 -22.90786 -22.15797 -21.41799 -20.99324 -19.29710 -18.83537 -18.31768 -18.07003 -18.02564 -17.55342 -17.48340 -16.97533 -16.92094 -16.56645 -16.37155 -15.64335 -15.47628 -15.25551 -14.86645 -14.78007 -14.66031 -14.58322 -14.30706 -14.28081 -14.19410 -13.82181 -13.43716 -13.28840 -13.20939 -13.18677 -13.06036 -13.01671 -12.55730 -12.31969 -12.25747 -12.19873 -11.91633 -11.77762 -11.65965 -11.47748 -11.34577 -10.99506 -10.57001 -10.22540 -8.82010 -7.91587 -5.37909 1.34316 1.50562 1.53131 1.61228 1.89832 2.47251 2.49662 2.76241 2.89035 3.15116 3.21921 3.25330 3.35650 3.37676 3.50154 3.54827 3.59355 3.74813 3.89414 4.04213 4.09326 4.22057 4.23764 4.30773 4.47938 4.55197 4.62520 4.67987 4.75400 4.82686 4.87063 4.87893 5.00210 5.07337 5.26004 5.29849 5.58093 5.65680 6.32730 6.41697 7.07660 7.10327 7.75421 8.27881 9.16486 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003177 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.966125 B = 8811.340938 C =10684.362404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.297 1.297 7 C -0.266 4.266 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.168 4.168 12 C 0.299 3.701 13 F -0.206 7.206 14 F -0.210 7.210 15 C -0.138 4.138 16 H 0.121 0.879 17 C 0.136 3.864 18 N -0.709 5.709 19 C 0.543 3.457 20 O -0.580 6.580 21 C -0.187 4.187 22 H 0.140 0.860 23 C -0.104 4.104 24 C -0.192 4.192 25 H 0.141 0.859 26 C 0.291 3.709 27 F -0.219 7.219 28 F -0.210 7.210 29 C 0.154 3.846 30 H 0.251 0.749 31 H 0.075 0.925 32 H 0.003 0.997 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.135 0.865 39 H 0.114 0.886 40 H 0.161 0.839 41 H 0.014 0.986 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.575 -14.896 -0.258 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.223 1.223 7 C -0.395 4.395 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.050 3.950 11 C -0.207 4.207 12 C 0.262 3.738 13 F -0.187 7.187 14 F -0.192 7.192 15 C -0.159 4.159 16 H 0.139 0.861 17 C 0.011 3.989 18 N -0.360 5.360 19 C 0.331 3.669 20 O -0.460 6.460 21 C -0.208 4.208 22 H 0.158 0.842 23 C -0.141 4.141 24 C -0.211 4.211 25 H 0.159 0.841 26 C 0.237 3.763 27 F -0.201 7.201 28 F -0.191 7.191 29 C 0.028 3.972 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.178 0.822 41 H 0.032 0.968 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.023 -15.465 -0.204 20.877 hybrid contribution -0.423 1.435 -0.214 1.511 sum 13.600 -14.031 -0.418 19.545 Atomic orbital electron populations 1.70173 1.06840 1.26158 1.54863 1.25809 0.95903 1.01639 1.00800 0.85302 0.78090 0.79350 0.77702 1.21255 1.19072 1.22349 1.19551 0.93486 0.85332 1.41170 0.90193 1.44347 1.35661 1.02158 1.50601 1.20577 0.88355 0.97943 0.88088 1.23092 1.04745 0.92078 1.00830 1.21068 0.85119 0.87338 0.80251 1.92968 1.95078 1.71699 1.58986 1.92954 1.59035 1.90840 1.76340 1.22849 0.96973 0.96669 0.99397 0.86103 1.21096 0.86167 0.95451 0.96198 1.45766 1.23535 1.12202 1.54522 1.19968 0.85999 0.82922 0.78044 1.90685 1.62098 1.31443 1.61817 1.22225 0.93755 0.99424 1.05357 0.84213 1.23210 0.95654 0.99135 0.96145 1.23580 1.04554 0.98774 0.94227 0.84129 1.21674 0.76281 0.92861 0.85445 1.92989 1.72532 1.88399 1.66133 1.92957 1.52972 1.77209 1.96009 1.21056 0.98858 0.85145 0.92155 0.93947 0.90652 0.97890 0.88118 0.88978 0.90893 0.92371 0.74613 0.84737 0.86735 0.82181 0.96769 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.54 11.18 21.65 0.24 -52.30 16 2 C -0.05 -2.38 4.91 84.86 0.42 -1.96 16 3 Si 0.97 41.83 29.59 68.60 2.03 43.86 16 4 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.27 -13.23 9.59 84.03 0.81 -12.43 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.71 16 9 N -0.61 -27.65 2.99 -698.25 -2.09 -29.74 16 10 C 0.18 7.97 5.11 86.36 0.44 8.41 16 11 C -0.17 -5.88 5.62 30.67 0.17 -5.71 16 12 C 0.30 10.07 1.63 30.62 0.05 10.12 16 13 F -0.21 -6.60 16.41 44.97 0.74 -5.86 16 14 F -0.21 -8.00 15.72 44.97 0.71 -7.29 16 15 C -0.14 -4.20 2.04 -10.57 -0.02 -4.22 16 16 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 17 C 0.14 3.86 4.83 86.38 0.42 4.28 16 18 N -0.71 -16.94 5.33 -463.07 -2.47 -19.41 16 19 C 0.54 13.69 7.61 87.66 0.67 14.36 16 20 O -0.58 -18.96 16.26 -3.04 -0.05 -19.01 16 21 C -0.19 -3.35 5.84 -11.54 -0.07 -3.42 16 22 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 23 C -0.10 -1.31 9.62 30.59 0.29 -1.01 16 24 C -0.19 -2.85 5.67 -10.79 -0.06 -2.91 16 25 H 0.14 2.27 7.67 -2.39 -0.02 2.25 16 26 C 0.29 3.72 5.67 71.98 0.41 4.13 16 27 F -0.22 -4.32 17.29 44.97 0.78 -3.54 16 28 F -0.21 -3.16 15.92 44.97 0.72 -2.45 16 29 C 0.15 5.72 5.42 86.51 0.47 6.19 16 30 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.08 3.81 6.02 -2.39 -0.01 3.80 16 32 H 0.00 0.15 7.92 -2.39 -0.02 0.13 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.07 2.11 7.63 -2.39 -0.02 2.09 16 36 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 37 H 0.42 8.16 7.72 -92.70 -0.72 7.45 16 38 H 0.13 1.27 7.22 -2.38 -0.02 1.26 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 42 H 0.08 2.75 7.16 -2.39 -0.02 2.74 16 Total: -1.00 -66.24 357.84 4.95 -61.30 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.35 Total: 18.61 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 3.99 Total: 15.83 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.31 Total: -101.45 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 9 Polarization: -22.08 SS G_CDS: 2.94 Total: -19.14 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -66.24 4.95 -61.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046932374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.198 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds