Wall clock time and date at job start Tue Mar 31 2020 20:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 F 1.39899 * 109.46222 * 58.65158 * 12 11 10 14 14 F 1.39900 * 109.45814 * 178.62857 * 12 11 10 15 15 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 16 16 H 1.08997 * 109.50129 * 301.38075 * 15 12 11 17 17 C 1.53004 * 109.49428 * 181.32024 * 15 12 11 18 18 N 1.46505 * 109.47042 * 175.00365 * 17 15 12 19 19 C 1.34777 * 119.99961 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99998 * 359.97438 * 19 18 17 21 21 C 1.50694 * 119.99754 * 179.97438 * 19 18 17 22 22 H 1.08999 * 115.55461 * 325.66512 * 21 19 18 23 23 C 1.53002 * 117.49997 * 111.37828 * 21 19 18 24 24 C 1.53002 * 117.49614 * 180.02562 * 21 19 18 25 25 H 1.08998 * 117.50099 * 359.97438 * 24 21 19 26 26 C 1.53005 * 117.50187 * 144.99821 * 24 21 19 27 27 F 1.39897 * 109.47028 * 179.97438 * 26 24 21 28 28 F 1.39899 * 109.46648 * 299.99740 * 26 24 21 29 29 C 1.46965 * 120.65080 * 331.75212 * 9 7 2 30 30 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58780 * 6.61307 * 10 9 7 32 32 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 33 33 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 34 34 H 1.08998 * 109.49989 * 294.58404 * 11 10 9 35 35 H 1.08999 * 109.46886 * 294.99768 * 17 15 12 36 36 H 1.08995 * 109.47570 * 55.00235 * 17 15 12 37 37 H 0.96997 * 119.99893 * 359.97438 * 18 17 15 38 38 H 1.08996 * 117.50094 * 214.97299 * 23 21 19 39 39 H 1.08999 * 117.49372 * 359.97438 * 23 21 19 40 40 H 1.09002 * 109.46676 * 59.99580 * 26 24 21 41 41 H 1.09000 * 109.47153 * 113.74759 * 29 9 7 42 42 H 1.08996 * 109.70977 * 353.45660 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 9 -0.2689 -5.1393 1.0466 14 9 1.0222 -5.6127 2.8707 15 6 0.4931 -3.3254 2.4085 16 1 1.3414 -2.9764 2.9972 17 6 -0.7451 -3.4181 3.3025 18 7 -0.9762 -2.1255 3.9523 19 6 -2.0196 -1.9700 4.7911 20 8 -2.7675 -2.8999 5.0076 21 6 -2.2569 -0.6406 5.4600 22 1 -1.3601 -0.0778 5.7189 23 6 -3.4918 0.1551 5.0322 24 6 -3.4576 -0.5279 6.4015 25 1 -4.0761 -1.4151 6.5368 26 6 -3.3076 0.3665 7.6338 27 9 -4.4964 0.3477 8.3711 28 9 -2.2580 -0.1068 8.4284 29 6 0.2251 -2.3428 1.2642 30 1 -0.4849 0.8401 0.0004 31 1 2.7375 -3.5125 -0.7654 32 1 1.0447 -4.0592 -0.8567 33 1 2.3025 -5.6087 0.5645 34 1 2.8996 -4.2596 1.5608 35 1 -1.6122 -3.6800 2.6961 36 1 -0.5884 -4.1838 4.0622 37 1 -0.3782 -1.3818 3.7789 38 1 -3.4075 1.2415 5.0095 39 1 -4.1323 -0.2829 4.2667 40 1 -3.0925 1.3873 7.3178 41 1 -0.6770 -2.6412 0.7300 42 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046932375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:58 Heat of formation + Delta-G solvation = -201.278206 kcal Electronic energy + Delta-G solvation = -30383.330241 eV Core-core repulsion = 25477.801243 eV Total energy + Delta-G solvation = -4905.528998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.12118 -48.56983 -47.15293 -46.52283 -39.99448 -37.61181 -36.70226 -34.83406 -32.82838 -31.25341 -29.87153 -27.72220 -26.06905 -25.26005 -23.77832 -22.46911 -21.77822 -21.24072 -20.20592 -19.54492 -18.16459 -17.41960 -17.21562 -17.07851 -16.85587 -16.43419 -16.24465 -15.65282 -15.28229 -15.16235 -14.86551 -14.28368 -14.11363 -14.04725 -13.66814 -13.54900 -13.50646 -13.31186 -13.15861 -12.93698 -12.84457 -12.75005 -12.37792 -12.28445 -11.79082 -11.72787 -11.56791 -11.26415 -11.23852 -10.97834 -10.89061 -10.80534 -10.62123 -10.59093 -10.11823 -10.00753 -9.94016 -9.67312 -8.91057 -8.69917 -6.96013 -6.01453 -3.45684 2.43911 2.99391 3.22876 3.31477 3.32052 3.32999 3.62257 3.94980 4.18428 4.20210 4.31502 4.37069 4.54664 4.59985 4.69642 4.86177 4.89971 4.95522 4.97668 5.13818 5.26808 5.35358 5.38337 5.49248 5.65722 5.75913 5.76743 5.86450 5.95848 6.01942 6.17589 6.32239 6.45538 6.52064 6.68562 6.94499 7.30833 7.59569 7.60715 8.19068 8.28895 8.95822 9.57822 10.14097 11.07578 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003678 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.361060 B = 7610.605325 C = 9707.902470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.143 3.857 11 C -0.171 4.171 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.213 7.213 15 C -0.165 4.165 16 H 0.099 0.901 17 C 0.129 3.871 18 N -0.711 5.711 19 C 0.544 3.456 20 O -0.544 6.544 21 C -0.165 4.165 22 H 0.133 0.867 23 C -0.124 4.124 24 C -0.195 4.195 25 H 0.140 0.860 26 C 0.296 3.704 27 F -0.201 7.201 28 F -0.202 7.202 29 C 0.179 3.821 30 H 0.256 0.744 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.408 0.592 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.033 0.967 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 0.153 9.687 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.017 3.983 11 C -0.211 4.211 12 C 0.263 3.737 13 F -0.180 7.180 14 F -0.194 7.194 15 C -0.186 4.186 16 H 0.117 0.883 17 C 0.004 3.996 18 N -0.361 5.361 19 C 0.329 3.671 20 O -0.421 6.421 21 C -0.187 4.187 22 H 0.150 0.850 23 C -0.162 4.162 24 C -0.214 4.214 25 H 0.158 0.842 26 C 0.243 3.757 27 F -0.182 7.182 28 F -0.183 7.183 29 C 0.053 3.947 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.243 0.757 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.051 0.949 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.080 -0.410 9.840 10.319 hybrid contribution 0.707 0.926 0.051 1.166 sum -2.373 0.515 9.891 10.185 Atomic orbital electron populations 1.70024 1.05216 1.25842 1.53223 1.25075 0.95312 0.98522 1.00331 0.86300 0.79187 0.83315 0.77992 1.21209 1.21443 1.20360 1.19182 0.92718 0.84379 1.42627 0.91278 1.44077 1.35728 1.01832 1.49666 1.20914 0.99069 0.86297 0.92046 1.23052 0.95446 1.02498 1.00077 1.21011 0.86205 0.85882 0.80599 1.92968 1.58397 1.91106 1.75534 1.92960 1.95239 1.70851 1.60359 1.23199 0.98999 0.95451 1.00976 0.88313 1.21283 0.97880 0.84950 0.95446 1.45799 1.29796 1.14860 1.45682 1.19365 0.80624 0.88236 0.78853 1.90702 1.46481 1.41862 1.63103 1.22200 0.95107 0.98001 1.03366 0.84965 1.23143 0.97687 0.99666 0.95667 1.23356 1.03580 1.03721 0.90725 0.84247 1.21310 0.72197 0.98631 0.83581 1.92992 1.48158 1.97758 1.79341 1.93009 1.57970 1.90824 1.76512 1.20873 0.89647 0.97370 0.86825 0.93355 0.91269 0.95075 0.90384 0.89240 0.90729 0.91275 0.75652 0.86775 0.86725 0.86892 0.94862 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.40 11.20 55.49 0.62 -22.78 16 2 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.26 -6.39 9.58 -15.06 -0.14 -6.53 16 8 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.25 3.00 -172.29 -0.52 -13.76 16 10 C 0.14 2.73 6.31 -3.71 -0.02 2.70 16 11 C -0.17 -2.75 5.62 -26.61 -0.15 -2.90 16 12 C 0.30 5.17 1.63 -26.69 -0.04 5.13 16 13 F -0.20 -3.74 15.73 2.25 0.04 -3.70 16 14 F -0.21 -3.62 16.40 2.25 0.04 -3.58 16 15 C -0.16 -2.84 2.03 -90.50 -0.18 -3.02 16 16 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 17 C 0.13 2.12 4.83 -4.04 -0.02 2.10 16 18 N -0.71 -10.56 5.33 -60.29 -0.32 -10.88 16 19 C 0.54 8.18 7.61 -10.99 -0.08 8.09 16 20 O -0.54 -10.04 16.26 5.55 0.09 -9.95 16 21 C -0.17 -1.84 5.86 -91.77 -0.54 -2.37 16 22 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.12 -1.14 9.88 -26.70 -0.26 -1.40 16 24 C -0.19 -2.02 5.41 -90.59 -0.49 -2.51 16 25 H 0.14 1.70 7.67 -51.93 -0.40 1.31 16 26 C 0.30 2.72 5.50 37.16 0.20 2.92 16 27 F -0.20 -2.18 17.34 2.25 0.04 -2.14 16 28 F -0.20 -2.32 17.29 2.25 0.04 -2.28 16 29 C 0.18 3.75 4.18 -3.69 -0.02 3.74 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 32 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.35 7.97 -51.93 -0.41 0.93 16 36 H 0.07 1.15 7.63 -51.93 -0.40 0.76 16 37 H 0.41 5.58 7.71 -40.82 -0.31 5.26 16 38 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.11 0.64 7.90 -51.93 -0.41 0.23 16 41 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.10 2.24 5.28 -51.93 -0.27 1.97 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -29.58 359.72 -6.94 -36.52 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.52 Total: 6.59 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.84 Total: 6.03 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.22 Total: -47.43 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 0.15 Total: -11.71 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.58 -6.94 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046932375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.757 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds