Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 F 1.39899 * 109.46222 * 58.65158 * 12 11 10 14 14 F 1.39900 * 109.45814 * 178.62857 * 12 11 10 15 15 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 16 16 H 1.08997 * 109.50129 * 301.38075 * 15 12 11 17 17 C 1.53004 * 109.49428 * 181.32024 * 15 12 11 18 18 N 1.46505 * 109.47042 * 175.00365 * 17 15 12 19 19 C 1.34777 * 119.99961 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99998 * 359.97438 * 19 18 17 21 21 C 1.50694 * 119.99754 * 179.97438 * 19 18 17 22 22 H 1.08999 * 115.55461 * 325.66512 * 21 19 18 23 23 C 1.53002 * 117.49997 * 111.37828 * 21 19 18 24 24 C 1.53002 * 117.49614 * 180.02562 * 21 19 18 25 25 H 1.08998 * 117.50099 * 359.97438 * 24 21 19 26 26 C 1.53005 * 117.50187 * 144.99821 * 24 21 19 27 27 F 1.39897 * 109.47028 * 179.97438 * 26 24 21 28 28 F 1.39899 * 109.46648 * 299.99740 * 26 24 21 29 29 C 1.46965 * 120.65080 * 331.75212 * 9 7 2 30 30 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58780 * 6.61307 * 10 9 7 32 32 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 33 33 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 34 34 H 1.08998 * 109.49989 * 294.58404 * 11 10 9 35 35 H 1.08999 * 109.46886 * 294.99768 * 17 15 12 36 36 H 1.08995 * 109.47570 * 55.00235 * 17 15 12 37 37 H 0.96997 * 119.99893 * 359.97438 * 18 17 15 38 38 H 1.08996 * 117.50094 * 214.97299 * 23 21 19 39 39 H 1.08999 * 117.49372 * 359.97438 * 23 21 19 40 40 H 1.09002 * 109.46676 * 59.99580 * 26 24 21 41 41 H 1.09000 * 109.47153 * 113.74759 * 29 9 7 42 42 H 1.08996 * 109.70977 * 353.45660 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 9 -0.2689 -5.1393 1.0466 14 9 1.0222 -5.6127 2.8707 15 6 0.4931 -3.3254 2.4085 16 1 1.3414 -2.9764 2.9972 17 6 -0.7451 -3.4181 3.3025 18 7 -0.9762 -2.1255 3.9523 19 6 -2.0196 -1.9700 4.7911 20 8 -2.7675 -2.8999 5.0076 21 6 -2.2569 -0.6406 5.4600 22 1 -1.3601 -0.0778 5.7189 23 6 -3.4918 0.1551 5.0322 24 6 -3.4576 -0.5279 6.4015 25 1 -4.0761 -1.4151 6.5368 26 6 -3.3076 0.3665 7.6338 27 9 -4.4964 0.3477 8.3711 28 9 -2.2580 -0.1068 8.4284 29 6 0.2251 -2.3428 1.2642 30 1 -0.4849 0.8401 0.0004 31 1 2.7375 -3.5125 -0.7654 32 1 1.0447 -4.0592 -0.8567 33 1 2.3025 -5.6087 0.5645 34 1 2.8996 -4.2596 1.5608 35 1 -1.6122 -3.6800 2.6961 36 1 -0.5884 -4.1838 4.0622 37 1 -0.3782 -1.3818 3.7789 38 1 -3.4075 1.2415 5.0095 39 1 -4.1323 -0.2829 4.2667 40 1 -3.0925 1.3873 7.3178 41 1 -0.6770 -2.6412 0.7300 42 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046932375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -218.241675 kcal Electronic energy + Delta-G solvation = -30384.065832 eV Core-core repulsion = 25477.801243 eV Total energy + Delta-G solvation = -4906.264589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.99808 -49.89843 -47.95687 -47.94718 -41.16412 -39.06741 -37.76957 -36.24140 -34.52032 -32.68865 -31.53675 -28.64328 -27.38897 -26.92034 -24.90770 -23.98847 -22.84108 -22.42435 -21.44500 -20.97430 -19.23039 -18.78596 -18.31928 -18.14353 -18.01797 -17.58436 -17.42470 -17.07094 -16.78318 -16.49095 -16.36191 -15.61493 -15.49141 -15.24206 -14.86572 -14.79064 -14.62697 -14.53990 -14.33058 -14.28153 -14.10403 -13.92487 -13.82875 -13.30617 -13.22188 -13.15370 -13.06854 -12.97908 -12.57993 -12.24499 -12.14380 -12.01595 -11.85903 -11.77047 -11.63928 -11.62636 -11.35186 -11.00150 -10.56483 -10.21870 -8.77043 -7.88180 -5.35141 1.33433 1.52517 1.56706 1.64514 1.88343 2.47687 2.52702 2.74493 2.85989 3.14526 3.23528 3.27010 3.32800 3.40580 3.54284 3.55443 3.62026 3.74819 3.92671 3.96044 4.09551 4.20391 4.21341 4.29449 4.45370 4.54466 4.65134 4.69555 4.73066 4.86323 4.88577 4.96392 4.97264 5.13092 5.25603 5.27098 5.58348 5.68998 6.36901 6.41141 7.09383 7.11706 7.77867 8.31703 9.19701 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003678 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.361060 B = 7610.605325 C = 9707.902470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.037 4.037 3 Si 0.964 3.036 4 H -0.293 1.293 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.073 0.927 9 N -0.607 5.607 10 C 0.139 3.861 11 C -0.159 4.159 12 C 0.296 3.704 13 F -0.211 7.211 14 F -0.208 7.208 15 C -0.150 4.150 16 H 0.114 0.886 17 C 0.136 3.864 18 N -0.706 5.706 19 C 0.537 3.463 20 O -0.586 6.586 21 C -0.175 4.175 22 H 0.161 0.839 23 C -0.106 4.106 24 C -0.198 4.198 25 H 0.112 0.888 26 C 0.297 3.703 27 F -0.213 7.213 28 F -0.217 7.217 29 C 0.194 3.806 30 H 0.254 0.746 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.153 0.847 39 H 0.101 0.899 40 H 0.162 0.838 41 H -0.002 1.002 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 1.431 10.444 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.792 3.208 4 H -0.220 1.220 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.399 4.399 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.013 3.987 11 C -0.199 4.199 12 C 0.259 3.741 13 F -0.192 7.192 14 F -0.189 7.189 15 C -0.171 4.171 16 H 0.132 0.868 17 C 0.011 3.989 18 N -0.357 5.357 19 C 0.325 3.675 20 O -0.466 6.466 21 C -0.196 4.196 22 H 0.178 0.822 23 C -0.143 4.143 24 C -0.217 4.217 25 H 0.130 0.870 26 C 0.244 3.756 27 F -0.194 7.194 28 F -0.198 7.198 29 C 0.067 3.933 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.171 0.829 39 H 0.119 0.881 40 H 0.179 0.821 41 H 0.016 0.984 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.555 0.857 10.600 10.748 hybrid contribution 0.210 0.440 -0.255 0.550 sum -1.345 1.297 10.345 10.512 Atomic orbital electron populations 1.70163 1.06479 1.26197 1.54584 1.25723 0.95909 1.01170 1.00538 0.85346 0.78309 0.79787 0.77313 1.22018 1.21420 1.19425 1.19500 0.93066 0.85315 1.41976 0.90930 1.44324 1.35756 1.02561 1.50351 1.21022 0.98961 0.85491 0.93177 1.22953 0.94987 1.03099 0.98817 1.21145 0.86456 0.85661 0.80812 1.92952 1.59177 1.91199 1.75872 1.92968 1.95180 1.70598 1.60156 1.22986 0.99670 0.94812 0.99652 0.86832 1.21077 0.96717 0.86004 0.95066 1.45776 1.30083 1.14427 1.45428 1.20106 0.79671 0.89397 0.78295 1.90679 1.47765 1.43707 1.64482 1.22254 0.96934 0.96337 1.04026 0.82160 1.23317 0.95392 1.01465 0.94135 1.23288 1.02720 1.03564 0.92155 0.86977 1.21719 0.71283 1.00318 0.82319 1.92968 1.48985 1.97856 1.79613 1.92980 1.58632 1.91236 1.76946 1.20548 0.88095 0.97361 0.87283 0.93718 0.90192 0.96408 0.87689 0.87747 0.92892 0.91192 0.74777 0.82897 0.88067 0.82135 0.98422 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.66 11.20 21.65 0.24 -48.42 16 2 C -0.04 -1.82 4.92 84.86 0.42 -1.40 16 3 Si 0.96 39.56 29.59 68.60 2.03 41.59 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.27 -13.03 9.58 84.03 0.81 -12.22 16 8 H 0.07 3.40 7.88 -2.91 -0.02 3.38 16 9 N -0.61 -27.00 3.00 -699.00 -2.10 -29.10 16 10 C 0.14 5.16 6.31 86.37 0.54 5.70 16 11 C -0.16 -4.77 5.62 30.67 0.17 -4.60 16 12 C 0.30 9.88 1.63 30.62 0.05 9.93 16 13 F -0.21 -7.93 15.73 44.97 0.71 -7.23 16 14 F -0.21 -6.71 16.40 44.97 0.74 -5.97 16 15 C -0.15 -5.10 2.03 -10.71 -0.02 -5.12 16 16 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 17 C 0.14 4.56 4.83 86.38 0.42 4.98 16 18 N -0.71 -21.01 5.33 -463.05 -2.47 -23.47 16 19 C 0.54 16.27 7.61 87.66 0.67 16.94 16 20 O -0.59 -22.40 16.26 -3.04 -0.05 -22.44 16 21 C -0.17 -3.63 5.86 -11.54 -0.07 -3.69 16 22 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 23 C -0.11 -1.73 9.88 30.61 0.30 -1.43 16 24 C -0.20 -3.89 5.41 -10.77 -0.06 -3.95 16 25 H 0.11 2.84 7.67 -2.39 -0.02 2.82 16 26 C 0.30 4.78 5.50 71.98 0.40 5.18 16 27 F -0.21 -4.33 17.34 44.97 0.78 -3.55 16 28 F -0.22 -4.62 17.29 44.97 0.78 -3.84 16 29 C 0.19 8.19 4.18 86.36 0.36 8.55 16 30 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 31 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 32 H 0.02 0.71 7.92 -2.39 -0.02 0.69 16 33 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.05 2.00 7.97 -2.39 -0.02 1.98 16 36 H 0.07 2.34 7.63 -2.39 -0.02 2.32 16 37 H 0.42 11.10 7.71 -92.71 -0.71 10.39 16 38 H 0.15 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.16 1.13 7.90 -2.39 -0.02 1.11 16 41 H 0.00 -0.11 7.92 -2.39 -0.02 -0.13 16 42 H 0.09 3.91 5.28 -2.39 -0.01 3.89 16 Total: -1.00 -65.12 359.72 5.00 -60.12 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.35 Total: 23.46 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 3.99 Total: 18.86 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.32 Total: -101.00 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 9 Polarization: -23.59 SS G_CDS: 3.00 Total: -20.58 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -65.12 5.00 -60.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046932375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.124 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds