Wall clock time and date at job start Tue Mar 31 2020 20:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47023 * 235.35418 * 3 2 1 5 5 H 1.48500 * 109.47318 * 115.35520 * 3 2 1 6 6 H 1.48503 * 109.47262 * 355.35362 * 3 2 1 7 7 C 1.38816 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99540 * 352.30243 * 7 2 1 9 9 N 1.36928 * 119.99888 * 172.30420 * 7 2 1 10 10 C 1.47175 * 136.00264 * 6.41051 * 9 7 2 11 11 C 1.53200 * 87.74269 * 153.40313 * 10 9 7 12 12 C 1.47168 * 135.99932 * 186.77746 * 9 7 2 13 13 C 1.52782 * 113.89000 * 139.43884 * 11 10 9 14 14 N 1.47357 * 108.05150 * 181.35857 * 13 11 10 15 15 C 1.34769 * 121.06529 * 131.75990 * 14 13 11 16 16 O 1.21285 * 120.00092 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00212 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47525 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.53157 * 55.69302 * 18 17 15 20 20 N 1.47316 * 110.59709 * 292.86853 * 18 17 15 21 21 C 1.34523 * 106.61775 * 241.47208 * 20 18 17 22 22 O 1.21537 * 123.77010 * 180.02562 * 21 20 18 23 23 N 1.33791 * 112.45756 * 359.97438 * 21 20 18 24 24 C 1.35115 * 111.68671 * 359.91522 * 23 21 20 25 25 O 1.21238 * 127.33582 * 180.09667 * 24 23 21 26 26 C 1.47128 * 117.87421 * 311.75445 * 14 13 11 27 27 C 1.53225 * 108.73610 * 52.29343 * 26 14 13 28 28 O 1.42361 * 114.55415 * 271.98964 * 11 10 9 29 29 H 0.96999 * 119.99962 * 184.89070 * 1 2 3 30 30 H 1.08995 * 113.49221 * 268.09459 * 10 9 7 31 31 H 1.08997 * 113.49083 * 38.60623 * 10 9 7 32 32 H 1.09003 * 113.48886 * 321.39036 * 12 9 7 33 33 H 1.08994 * 113.49487 * 91.83833 * 12 9 7 34 34 H 1.09007 * 109.74962 * 300.99460 * 13 11 10 35 35 H 1.09000 * 109.74506 * 61.71508 * 13 11 10 36 36 H 1.09005 * 109.46552 * 299.99165 * 17 15 14 37 37 H 1.08990 * 109.47701 * 59.99432 * 17 15 14 38 38 H 0.97000 * 126.68786 * 61.43634 * 20 18 17 39 39 H 0.97003 * 124.17184 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.59367 * 292.51926 * 26 14 13 41 41 H 1.08994 * 109.71965 * 172.14279 * 26 14 13 42 42 H 1.09002 * 109.49419 * 185.84966 * 27 26 14 43 43 H 1.08996 * 109.49560 * 65.76920 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1870 1.6485 -1.1518 5 1 3.0169 1.7467 1.2652 6 1 1.2891 2.7442 -0.1134 7 6 2.0103 -1.2022 0.0005 8 1 1.4775 -2.1332 0.1262 9 7 3.3703 -1.2075 -0.1583 10 6 4.4311 -0.1904 -0.2364 11 6 5.4024 -1.2499 0.2936 12 6 4.4118 -2.2327 -0.3322 13 6 6.7707 -1.2301 -0.3858 14 7 7.5843 -2.3132 0.1942 15 6 8.2627 -3.1713 -0.5930 16 8 8.2092 -3.0592 -1.7994 17 6 9.0870 -4.2707 0.0258 18 6 9.7484 -5.0962 -1.0797 19 1 10.3374 -4.4548 -1.7353 20 7 8.7346 -5.8351 -1.8518 21 6 9.0097 -7.1426 -1.6958 22 8 8.3609 -8.0350 -2.2054 23 7 10.0781 -7.3508 -0.9179 24 6 10.6144 -6.1887 -0.4848 25 8 11.5835 -6.0474 0.2299 26 6 7.6324 -2.4279 1.6603 27 6 6.1982 -2.4626 2.1985 28 8 5.4818 -1.3224 1.7132 29 1 -0.4850 -0.8370 0.0716 30 1 4.6514 0.1303 -1.2546 31 1 4.2826 0.6457 0.4469 32 1 4.2469 -3.1261 0.2702 33 1 4.6261 -2.4616 -1.3760 34 1 6.6524 -1.3918 -1.4572 35 1 7.2557 -0.2700 -0.2090 36 1 9.8560 -3.8336 0.6628 37 1 8.4429 -4.9152 0.6239 38 1 8.0096 -5.4533 -2.3710 39 1 10.4257 -8.2280 -0.6929 40 1 8.1585 -1.5690 2.0770 41 1 8.1502 -3.3450 1.9406 42 1 6.2180 -2.4427 3.2882 43 1 5.7045 -3.3735 1.8599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053291265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:42 Heat of formation + Delta-G solvation = -37.461746 kcal Electronic energy + Delta-G solvation = -30242.019280 eV Core-core repulsion = 25905.370599 eV Total energy + Delta-G solvation = -4336.648681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.81553 -40.83872 -39.31264 -39.06271 -36.86197 -36.58133 -34.87804 -34.48391 -32.56066 -31.60834 -30.38940 -28.36621 -26.86935 -25.73842 -25.26889 -23.61215 -23.15678 -22.11514 -21.41589 -19.79521 -19.17244 -18.80049 -17.81745 -17.56848 -17.28522 -17.11991 -16.61581 -16.30015 -16.09946 -15.94182 -15.70502 -15.11792 -14.87412 -14.76302 -14.60393 -14.20382 -13.96016 -13.88404 -13.58043 -13.24658 -13.23536 -13.02748 -12.50460 -12.25511 -11.80914 -11.53449 -11.49036 -11.23514 -10.88934 -10.86128 -10.79711 -10.61902 -10.53641 -10.17156 -9.94804 -9.93234 -9.29094 -9.13373 -8.89082 -8.67052 -7.19143 -6.33926 -3.24844 1.03823 1.96395 2.19046 2.44811 2.57357 2.73611 3.37910 3.42468 3.44448 3.60669 3.70238 3.89049 4.09362 4.29039 4.47687 4.58081 4.62264 4.69779 4.72639 4.78213 4.87886 4.94153 5.03145 5.05357 5.32514 5.45559 5.50260 5.52938 5.58626 5.71486 5.92539 6.06201 6.07478 6.10621 6.23610 6.38382 6.40573 6.48896 6.85643 6.99558 7.02186 7.40481 7.71061 7.74187 8.21052 8.94836 9.46957 10.30191 11.18837 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.002852 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.487492 B = 9814.235044 C =10393.062416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.024 4.024 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.303 4.303 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.117 3.883 11 C 0.056 3.944 12 C 0.107 3.893 13 C 0.101 3.899 14 N -0.606 5.606 15 C 0.522 3.478 16 O -0.538 6.538 17 C -0.145 4.145 18 C 0.109 3.891 19 H 0.139 0.861 20 N -0.710 5.710 21 C 0.701 3.299 22 O -0.542 6.542 23 N -0.680 5.680 24 C 0.532 3.468 25 O -0.463 6.463 26 C 0.069 3.931 27 C 0.045 3.955 28 O -0.334 6.334 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.449 0.551 39 H 0.433 0.567 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.099 -9.293 2.533 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.222 4.222 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.429 4.429 8 H 0.100 0.900 9 N -0.345 5.345 10 C -0.009 4.009 11 C 0.014 3.986 12 C -0.020 4.020 13 C -0.022 4.022 14 N -0.340 5.340 15 C 0.309 3.691 16 O -0.415 6.415 17 C -0.186 4.186 18 C -0.001 4.001 19 H 0.157 0.843 20 N -0.377 5.377 21 C 0.400 3.600 22 O -0.415 6.415 23 N -0.352 5.352 24 C 0.317 3.683 25 O -0.332 6.332 26 C -0.054 4.054 27 C -0.033 4.033 28 O -0.251 6.251 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.296 0.704 39 H 0.276 0.724 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.639 -7.766 2.085 25.918 hybrid contribution 0.144 -2.188 -0.018 2.193 sum 24.784 -9.954 2.067 26.788 Atomic orbital electron populations 1.70923 1.05317 1.29434 1.51873 1.25744 0.96429 1.00987 0.99075 0.83721 0.73898 0.75928 0.76288 1.21356 1.21789 1.22143 1.20091 0.78235 0.95875 1.48704 0.89977 1.45798 1.02182 1.01150 1.85371 1.22737 0.86157 0.93660 0.98311 1.23206 0.91835 1.01544 0.82044 1.22804 0.87814 0.93768 0.97641 1.22225 0.90270 0.89508 1.00154 1.48160 1.47934 1.31062 1.06816 1.20182 0.79769 0.82086 0.87018 1.90723 1.63773 1.73157 1.13877 1.21932 1.01231 0.97034 0.98362 1.21767 0.90115 0.93760 0.94466 0.84338 1.45679 1.33743 1.04509 1.53723 1.15916 0.80461 0.84410 0.79239 1.91084 1.52943 1.45261 1.52185 1.44398 1.30120 1.11944 1.48725 1.20788 0.83769 0.84814 0.78965 1.90870 1.24249 1.84447 1.33653 1.22536 0.99410 1.03603 0.79818 1.22926 0.89886 0.90672 0.99806 1.88009 1.74596 1.43717 1.18822 0.92919 0.91943 0.91837 0.93646 0.93548 0.87473 0.90320 0.85972 0.87429 0.70423 0.72418 0.89833 0.88956 0.87538 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 3 Si 1.07 26.60 25.13 -169.99 -4.27 22.32 16 4 H -0.29 -6.49 6.12 56.52 0.35 -6.14 16 5 H -0.29 -6.89 6.64 56.52 0.38 -6.52 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.30 -8.79 11.08 -15.06 -0.17 -8.96 16 8 H 0.08 2.52 8.05 -52.49 -0.42 2.09 16 9 N -0.62 -15.13 3.70 -184.60 -0.68 -15.82 16 10 C 0.12 2.41 5.14 -8.07 -0.04 2.37 16 11 C 0.06 0.93 1.29 -90.67 -0.12 0.81 16 12 C 0.11 2.07 7.90 -8.21 -0.06 2.00 16 13 C 0.10 1.29 5.83 -3.69 -0.02 1.27 16 14 N -0.61 -6.05 3.03 -172.48 -0.52 -6.58 16 15 C 0.52 4.83 7.61 -10.99 -0.08 4.75 16 16 O -0.54 -6.44 14.49 5.55 0.08 -6.36 16 17 C -0.14 -0.81 3.84 -27.88 -0.11 -0.91 16 18 C 0.11 0.66 3.15 -68.21 -0.22 0.45 16 19 H 0.14 0.76 8.01 -51.93 -0.42 0.34 16 20 N -0.71 -5.53 5.88 -59.19 -0.35 -5.88 16 21 C 0.70 6.36 9.00 -88.02 -0.79 5.57 16 22 O -0.54 -7.13 18.04 5.33 0.10 -7.03 16 23 N -0.68 -4.32 5.72 -15.72 -0.09 -4.41 16 24 C 0.53 3.49 8.17 -10.40 -0.08 3.41 16 25 O -0.46 -4.09 18.02 5.59 0.10 -3.98 16 26 C 0.07 0.53 6.50 -3.58 -0.02 0.51 16 27 C 0.04 0.49 6.90 37.27 0.26 0.74 16 28 O -0.33 -5.50 10.55 -35.23 -0.37 -5.88 16 29 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 30 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 31 H 0.06 1.38 4.68 -51.93 -0.24 1.13 16 32 H 0.05 0.88 7.36 -51.93 -0.38 0.50 16 33 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 34 H 0.11 1.44 6.90 -51.93 -0.36 1.08 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 0.44 7.99 -51.93 -0.41 0.03 16 37 H 0.11 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.45 3.85 8.18 -40.82 -0.33 3.52 16 39 H 0.43 1.93 8.96 -40.82 -0.37 1.57 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.40 6.04 -51.93 -0.31 0.09 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.65 7.30 -51.93 -0.38 0.27 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -37.88 349.93 -6.87 -44.75 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.34 Total: 1.22 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -1.56 Total: 11.19 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.88 Total: -61.51 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.09 Total: -23.25 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.27 Total: 22.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.88 -6.87 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053291265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.293 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds