Wall clock time and date at job start Tue Mar 31 2020 20:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47023 * 235.35418 * 3 2 1 5 5 H 1.48500 * 109.47318 * 115.35520 * 3 2 1 6 6 H 1.48503 * 109.47262 * 355.35362 * 3 2 1 7 7 C 1.38816 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99540 * 352.30243 * 7 2 1 9 9 N 1.36928 * 119.99888 * 172.30420 * 7 2 1 10 10 C 1.47175 * 136.00264 * 6.41051 * 9 7 2 11 11 C 1.53200 * 87.74269 * 153.40313 * 10 9 7 12 12 C 1.47168 * 135.99932 * 186.77746 * 9 7 2 13 13 C 1.52782 * 113.89000 * 139.43884 * 11 10 9 14 14 N 1.47357 * 108.05150 * 181.35857 * 13 11 10 15 15 C 1.34769 * 121.06529 * 131.75990 * 14 13 11 16 16 O 1.21285 * 120.00092 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00212 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47525 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.53157 * 55.69302 * 18 17 15 20 20 N 1.47316 * 110.59709 * 292.86853 * 18 17 15 21 21 C 1.34523 * 106.61775 * 241.47208 * 20 18 17 22 22 O 1.21537 * 123.77010 * 180.02562 * 21 20 18 23 23 N 1.33791 * 112.45756 * 359.97438 * 21 20 18 24 24 C 1.35115 * 111.68671 * 359.91522 * 23 21 20 25 25 O 1.21238 * 127.33582 * 180.09667 * 24 23 21 26 26 C 1.47128 * 117.87421 * 311.75445 * 14 13 11 27 27 C 1.53225 * 108.73610 * 52.29343 * 26 14 13 28 28 O 1.42361 * 114.55415 * 271.98964 * 11 10 9 29 29 H 0.96999 * 119.99962 * 184.89070 * 1 2 3 30 30 H 1.08995 * 113.49221 * 268.09459 * 10 9 7 31 31 H 1.08997 * 113.49083 * 38.60623 * 10 9 7 32 32 H 1.09003 * 113.48886 * 321.39036 * 12 9 7 33 33 H 1.08994 * 113.49487 * 91.83833 * 12 9 7 34 34 H 1.09007 * 109.74962 * 300.99460 * 13 11 10 35 35 H 1.09000 * 109.74506 * 61.71508 * 13 11 10 36 36 H 1.09005 * 109.46552 * 299.99165 * 17 15 14 37 37 H 1.08990 * 109.47701 * 59.99432 * 17 15 14 38 38 H 0.97000 * 126.68786 * 61.43634 * 20 18 17 39 39 H 0.97003 * 124.17184 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.59367 * 292.51926 * 26 14 13 41 41 H 1.08994 * 109.71965 * 172.14279 * 26 14 13 42 42 H 1.09002 * 109.49419 * 185.84966 * 27 26 14 43 43 H 1.08996 * 109.49560 * 65.76920 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1870 1.6485 -1.1518 5 1 3.0169 1.7467 1.2652 6 1 1.2891 2.7442 -0.1134 7 6 2.0103 -1.2022 0.0005 8 1 1.4775 -2.1332 0.1262 9 7 3.3703 -1.2075 -0.1583 10 6 4.4311 -0.1904 -0.2364 11 6 5.4024 -1.2499 0.2936 12 6 4.4118 -2.2327 -0.3322 13 6 6.7707 -1.2301 -0.3858 14 7 7.5843 -2.3132 0.1942 15 6 8.2627 -3.1713 -0.5930 16 8 8.2092 -3.0592 -1.7994 17 6 9.0870 -4.2707 0.0258 18 6 9.7484 -5.0962 -1.0797 19 1 10.3374 -4.4548 -1.7353 20 7 8.7346 -5.8351 -1.8518 21 6 9.0097 -7.1426 -1.6958 22 8 8.3609 -8.0350 -2.2054 23 7 10.0781 -7.3508 -0.9179 24 6 10.6144 -6.1887 -0.4848 25 8 11.5835 -6.0474 0.2299 26 6 7.6324 -2.4279 1.6603 27 6 6.1982 -2.4626 2.1985 28 8 5.4818 -1.3224 1.7132 29 1 -0.4850 -0.8370 0.0716 30 1 4.6514 0.1303 -1.2546 31 1 4.2826 0.6457 0.4469 32 1 4.2469 -3.1261 0.2702 33 1 4.6261 -2.4616 -1.3760 34 1 6.6524 -1.3918 -1.4572 35 1 7.2557 -0.2700 -0.2090 36 1 9.8560 -3.8336 0.6628 37 1 8.4429 -4.9152 0.6239 38 1 8.0096 -5.4533 -2.3710 39 1 10.4257 -8.2280 -0.6929 40 1 8.1585 -1.5690 2.0770 41 1 8.1502 -3.3450 1.9406 42 1 6.2180 -2.4427 3.2882 43 1 5.7045 -3.3735 1.8599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053291265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:41 Heat of formation + Delta-G solvation = -72.103185 kcal Electronic energy + Delta-G solvation = -30243.521446 eV Core-core repulsion = 25905.370599 eV Total energy + Delta-G solvation = -4338.150847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.43052 -41.89712 -40.33893 -39.74195 -38.06931 -37.35249 -35.82164 -35.07782 -34.62595 -32.42122 -31.46059 -29.53307 -28.12326 -27.30312 -26.16614 -24.55229 -23.80681 -23.26840 -22.48037 -20.99489 -20.12802 -19.62536 -19.41632 -18.50318 -18.00266 -17.88181 -17.66371 -17.26993 -16.84936 -16.75976 -16.65414 -16.22526 -15.98700 -15.66768 -15.48058 -15.29989 -15.26366 -15.02165 -14.99806 -14.49223 -14.24704 -13.95430 -13.44974 -13.15701 -12.99916 -12.85959 -12.65932 -12.40420 -12.25870 -12.17319 -11.85530 -11.51950 -11.48617 -11.46147 -11.28826 -11.03369 -10.86701 -10.70426 -10.57677 -9.61241 -9.22085 -8.68865 -5.50208 0.46082 1.37453 1.38023 1.49680 1.51553 1.68059 1.75364 1.91517 2.14397 2.53522 2.53825 2.85771 2.88158 3.16705 3.36000 3.39080 3.51358 3.73978 3.84737 3.95791 4.12336 4.24653 4.30703 4.37412 4.45000 4.48774 4.50277 4.57482 4.60763 4.62793 4.69737 4.80365 4.91289 4.96975 5.04506 5.12695 5.25975 5.72145 5.86092 5.90235 6.25163 6.30121 6.32874 6.65255 7.01929 7.06959 7.28277 8.20747 8.86614 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.002852 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.487492 B = 9814.235044 C =10393.062416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.085 4.085 3 Si 1.109 2.891 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.304 1.304 7 C -0.292 4.292 8 H 0.045 0.955 9 N -0.653 5.653 10 C 0.104 3.896 11 C 0.087 3.913 12 C 0.104 3.896 13 C 0.111 3.889 14 N -0.610 5.610 15 C 0.521 3.479 16 O -0.568 6.568 17 C -0.137 4.137 18 C 0.111 3.889 19 H 0.151 0.849 20 N -0.708 5.708 21 C 0.703 3.297 22 O -0.588 6.588 23 N -0.669 5.669 24 C 0.546 3.454 25 O -0.479 6.479 26 C 0.075 3.925 27 C 0.034 3.966 28 O -0.366 6.366 29 H 0.245 0.755 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.446 0.554 39 H 0.442 0.558 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.390 -8.852 3.480 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.276 4.276 3 Si 0.934 3.066 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.232 1.232 7 C -0.419 4.419 8 H 0.063 0.937 9 N -0.381 5.381 10 C -0.021 4.021 11 C 0.045 3.955 12 C -0.022 4.022 13 C -0.013 4.013 14 N -0.343 5.343 15 C 0.311 3.689 16 O -0.447 6.447 17 C -0.177 4.177 18 C 0.002 3.998 19 H 0.168 0.832 20 N -0.372 5.372 21 C 0.403 3.597 22 O -0.464 6.464 23 N -0.340 5.340 24 C 0.332 3.668 25 O -0.349 6.349 26 C -0.047 4.047 27 C -0.043 4.043 28 O -0.285 6.285 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.173 0.827 37 H 0.142 0.858 38 H 0.292 0.708 39 H 0.286 0.714 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 29.027 -7.367 3.059 30.103 hybrid contribution -1.160 -2.481 -0.269 2.751 sum 27.867 -9.847 2.790 29.687 Atomic orbital electron populations 1.71035 1.06704 1.28530 1.55241 1.27166 0.96443 1.04747 0.99239 0.83283 0.73434 0.71527 0.78348 1.17553 1.20052 1.23163 1.19935 0.80982 0.94395 1.46628 0.93713 1.45887 1.01513 1.04813 1.85933 1.23005 0.85897 0.93768 0.99390 1.22689 0.92941 0.97266 0.82654 1.23010 0.87402 0.93491 0.98301 1.21924 0.88464 0.91657 0.99226 1.48215 1.47596 1.30547 1.07956 1.20740 0.79446 0.82118 0.86612 1.90725 1.64753 1.73824 1.15392 1.21979 1.01725 0.95828 0.98187 1.21892 0.89656 0.93558 0.94731 0.83207 1.45728 1.33766 1.04271 1.53447 1.15976 0.80486 0.84286 0.78982 1.91057 1.54601 1.46660 1.54120 1.44249 1.29207 1.12666 1.47917 1.20664 0.83267 0.84615 0.78296 1.90883 1.24981 1.84528 1.34522 1.22692 0.97329 1.06607 0.78038 1.23294 0.91419 0.88273 1.01283 1.87950 1.76146 1.46070 1.18311 0.94609 0.90108 0.92630 0.94336 0.92644 0.88235 0.88291 0.82727 0.85829 0.70846 0.71392 0.87989 0.84873 0.85182 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.09 13.70 21.65 0.30 -63.79 16 2 C -0.08 -5.18 5.50 84.86 0.47 -4.71 16 3 Si 1.11 53.76 25.13 68.60 1.72 55.49 16 4 H -0.25 -10.56 6.12 99.48 0.61 -9.95 16 5 H -0.27 -12.40 6.64 99.48 0.66 -11.74 16 6 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 7 C -0.29 -17.55 11.08 84.04 0.93 -16.62 16 8 H 0.04 2.93 8.05 -2.91 -0.02 2.90 16 9 N -0.65 -32.14 3.70 -738.82 -2.73 -34.87 16 10 C 0.10 4.10 5.14 83.40 0.43 4.52 16 11 C 0.09 2.69 1.29 -10.82 -0.01 2.68 16 12 C 0.10 3.97 7.90 83.31 0.66 4.63 16 13 C 0.11 2.45 5.83 86.14 0.50 2.95 16 14 N -0.61 -9.63 3.03 -818.01 -2.48 -12.11 16 15 C 0.52 7.60 7.61 87.66 0.67 8.27 16 16 O -0.57 -12.00 14.49 -3.04 -0.04 -12.04 16 17 C -0.14 -0.87 3.84 29.85 0.11 -0.76 16 18 C 0.11 0.97 3.15 44.37 0.14 1.11 16 19 H 0.15 1.10 8.01 -2.39 -0.02 1.08 16 20 N -0.71 -9.62 5.88 -459.62 -2.70 -12.33 16 21 C 0.70 11.79 9.00 179.44 1.61 13.40 16 22 O -0.59 -15.31 18.04 -3.83 -0.07 -15.38 16 23 N -0.67 -7.05 5.72 -440.68 -2.52 -9.57 16 24 C 0.55 5.40 8.17 87.88 0.72 6.12 16 25 O -0.48 -6.78 18.02 -2.90 -0.05 -6.84 16 26 C 0.08 0.76 6.50 86.33 0.56 1.32 16 27 C 0.03 0.62 6.90 72.06 0.50 1.12 16 28 O -0.37 -11.23 10.55 -148.98 -1.57 -12.81 16 29 H 0.24 16.29 8.73 -92.71 -0.81 15.48 16 30 H 0.08 2.88 7.66 -2.39 -0.02 2.86 16 31 H 0.06 2.28 4.68 -2.39 -0.01 2.27 16 32 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16 33 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 34 H 0.10 2.40 6.90 -2.38 -0.02 2.38 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.16 0.11 7.99 -2.38 -0.02 0.09 16 37 H 0.12 0.50 7.69 -2.39 -0.02 0.48 16 38 H 0.45 7.04 8.18 -92.71 -0.76 6.29 16 39 H 0.44 3.12 8.96 -92.71 -0.83 2.29 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.13 0.29 6.04 -2.39 -0.01 0.27 16 42 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 0.93 7.30 -2.39 -0.02 0.91 16 Total: -1.00 -87.59 349.93 -3.54 -91.13 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -0.68 Total: 9.08 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.28 Total: 24.03 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -10.14 Total: -132.67 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.74 Total: -47.07 kcal Atomic # 14 Polarization: 53.76 SS G_CDS: 1.72 Total: 55.49 kcal Total: -87.59 -3.54 -91.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053291265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -87.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds