Wall clock time and date at job start Tue Mar 31 2020 20:48:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86802 * 119.99924 * 2 1
4 4 H 1.48501 * 109.47023 * 235.35418 * 3 2 1
5 5 H 1.48500 * 109.47318 * 115.35520 * 3 2 1
6 6 H 1.48503 * 109.47262 * 355.35362 * 3 2 1
7 7 C 1.38816 * 120.00136 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99540 * 352.30243 * 7 2 1
9 9 N 1.36928 * 119.99888 * 172.30420 * 7 2 1
10 10 C 1.47175 * 136.00264 * 6.41051 * 9 7 2
11 11 C 1.53200 * 87.74269 * 153.40313 * 10 9 7
12 12 C 1.47168 * 135.99932 * 186.77746 * 9 7 2
13 13 C 1.52782 * 113.89000 * 139.43884 * 11 10 9
14 14 N 1.47357 * 108.05150 * 181.35857 * 13 11 10
15 15 C 1.34769 * 121.06529 * 131.75990 * 14 13 11
16 16 O 1.21285 * 120.00092 * 359.97438 * 15 14 13
17 17 C 1.50702 * 120.00212 * 180.02562 * 15 14 13
18 18 C 1.53001 * 109.47525 * 179.97438 * 17 15 14
19 19 H 1.09000 * 110.53157 * 55.69302 * 18 17 15
20 20 N 1.47316 * 110.59709 * 292.86853 * 18 17 15
21 21 C 1.34523 * 106.61775 * 241.47208 * 20 18 17
22 22 O 1.21537 * 123.77010 * 180.02562 * 21 20 18
23 23 N 1.33791 * 112.45756 * 359.97438 * 21 20 18
24 24 C 1.35115 * 111.68671 * 359.91522 * 23 21 20
25 25 O 1.21238 * 127.33582 * 180.09667 * 24 23 21
26 26 C 1.47128 * 117.87421 * 311.75445 * 14 13 11
27 27 C 1.53225 * 108.73610 * 52.29343 * 26 14 13
28 28 O 1.42361 * 114.55415 * 271.98964 * 11 10 9
29 29 H 0.96999 * 119.99962 * 184.89070 * 1 2 3
30 30 H 1.08995 * 113.49221 * 268.09459 * 10 9 7
31 31 H 1.08997 * 113.49083 * 38.60623 * 10 9 7
32 32 H 1.09003 * 113.48886 * 321.39036 * 12 9 7
33 33 H 1.08994 * 113.49487 * 91.83833 * 12 9 7
34 34 H 1.09007 * 109.74962 * 300.99460 * 13 11 10
35 35 H 1.09000 * 109.74506 * 61.71508 * 13 11 10
36 36 H 1.09005 * 109.46552 * 299.99165 * 17 15 14
37 37 H 1.08990 * 109.47701 * 59.99432 * 17 15 14
38 38 H 0.97000 * 126.68786 * 61.43634 * 20 18 17
39 39 H 0.97003 * 124.17184 * 179.97438 * 23 21 20
40 40 H 1.09000 * 109.59367 * 292.51926 * 26 14 13
41 41 H 1.08994 * 109.71965 * 172.14279 * 26 14 13
42 42 H 1.09002 * 109.49419 * 185.84966 * 27 26 14
43 43 H 1.08996 * 109.49560 * 65.76920 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1870 1.6485 -1.1518
5 1 3.0169 1.7467 1.2652
6 1 1.2891 2.7442 -0.1134
7 6 2.0103 -1.2022 0.0005
8 1 1.4775 -2.1332 0.1262
9 7 3.3703 -1.2075 -0.1583
10 6 4.4311 -0.1904 -0.2364
11 6 5.4024 -1.2499 0.2936
12 6 4.4118 -2.2327 -0.3322
13 6 6.7707 -1.2301 -0.3858
14 7 7.5843 -2.3132 0.1942
15 6 8.2627 -3.1713 -0.5930
16 8 8.2092 -3.0592 -1.7994
17 6 9.0870 -4.2707 0.0258
18 6 9.7484 -5.0962 -1.0797
19 1 10.3374 -4.4548 -1.7353
20 7 8.7346 -5.8351 -1.8518
21 6 9.0097 -7.1426 -1.6958
22 8 8.3609 -8.0350 -2.2054
23 7 10.0781 -7.3508 -0.9179
24 6 10.6144 -6.1887 -0.4848
25 8 11.5835 -6.0474 0.2299
26 6 7.6324 -2.4279 1.6603
27 6 6.1982 -2.4626 2.1985
28 8 5.4818 -1.3224 1.7132
29 1 -0.4850 -0.8370 0.0716
30 1 4.6514 0.1303 -1.2546
31 1 4.2826 0.6457 0.4469
32 1 4.2469 -3.1261 0.2702
33 1 4.6261 -2.4616 -1.3760
34 1 6.6524 -1.3918 -1.4572
35 1 7.2557 -0.2700 -0.2090
36 1 9.8560 -3.8336 0.6628
37 1 8.4429 -4.9152 0.6239
38 1 8.0096 -5.4533 -2.3710
39 1 10.4257 -8.2280 -0.6929
40 1 8.1585 -1.5690 2.0770
41 1 8.1502 -3.3450 1.9406
42 1 6.2180 -2.4427 3.2882
43 1 5.7045 -3.3735 1.8599
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053291265.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:48:41
Heat of formation + Delta-G solvation = -72.103185 kcal
Electronic energy + Delta-G solvation = -30243.521446 eV
Core-core repulsion = 25905.370599 eV
Total energy + Delta-G solvation = -4338.150847 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.147 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.43052 -41.89712 -40.33893 -39.74195 -38.06931 -37.35249 -35.82164 -35.07782
-34.62595 -32.42122 -31.46059 -29.53307 -28.12326 -27.30312 -26.16614 -24.55229
-23.80681 -23.26840 -22.48037 -20.99489 -20.12802 -19.62536 -19.41632 -18.50318
-18.00266 -17.88181 -17.66371 -17.26993 -16.84936 -16.75976 -16.65414 -16.22526
-15.98700 -15.66768 -15.48058 -15.29989 -15.26366 -15.02165 -14.99806 -14.49223
-14.24704 -13.95430 -13.44974 -13.15701 -12.99916 -12.85959 -12.65932 -12.40420
-12.25870 -12.17319 -11.85530 -11.51950 -11.48617 -11.46147 -11.28826 -11.03369
-10.86701 -10.70426 -10.57677 -9.61241 -9.22085 -8.68865 -5.50208 0.46082
1.37453 1.38023 1.49680 1.51553 1.68059 1.75364 1.91517 2.14397
2.53522 2.53825 2.85771 2.88158 3.16705 3.36000 3.39080 3.51358
3.73978 3.84737 3.95791 4.12336 4.24653 4.30703 4.37412 4.45000
4.48774 4.50277 4.57482 4.60763 4.62793 4.69737 4.80365 4.91289
4.96975 5.04506 5.12695 5.25975 5.72145 5.86092 5.90235 6.25163
6.30121 6.32874 6.65255 7.01929 7.06959 7.28277 8.20747 8.86614
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.020561 B = 0.002852 C = 0.002693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1361.487492 B = 9814.235044 C =10393.062416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.085 4.085
3 Si 1.109 2.891
4 H -0.251 1.251
5 H -0.274 1.274
6 H -0.304 1.304
7 C -0.292 4.292
8 H 0.045 0.955
9 N -0.653 5.653
10 C 0.104 3.896
11 C 0.087 3.913
12 C 0.104 3.896
13 C 0.111 3.889
14 N -0.610 5.610
15 C 0.521 3.479
16 O -0.568 6.568
17 C -0.137 4.137
18 C 0.111 3.889
19 H 0.151 0.849
20 N -0.708 5.708
21 C 0.703 3.297
22 O -0.588 6.588
23 N -0.669 5.669
24 C 0.546 3.454
25 O -0.479 6.479
26 C 0.075 3.925
27 C 0.034 3.966
28 O -0.366 6.366
29 H 0.245 0.755
30 H 0.081 0.919
31 H 0.056 0.944
32 H 0.038 0.962
33 H 0.056 0.944
34 H 0.099 0.901
35 H 0.099 0.901
36 H 0.155 0.845
37 H 0.124 0.876
38 H 0.446 0.554
39 H 0.442 0.558
40 H 0.102 0.898
41 H 0.133 0.867
42 H 0.130 0.870
43 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.390 -8.852 3.480 30.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.615 5.615
2 C -0.276 4.276
3 Si 0.934 3.066
4 H -0.176 1.176
5 H -0.201 1.201
6 H -0.232 1.232
7 C -0.419 4.419
8 H 0.063 0.937
9 N -0.381 5.381
10 C -0.021 4.021
11 C 0.045 3.955
12 C -0.022 4.022
13 C -0.013 4.013
14 N -0.343 5.343
15 C 0.311 3.689
16 O -0.447 6.447
17 C -0.177 4.177
18 C 0.002 3.998
19 H 0.168 0.832
20 N -0.372 5.372
21 C 0.403 3.597
22 O -0.464 6.464
23 N -0.340 5.340
24 C 0.332 3.668
25 O -0.349 6.349
26 C -0.047 4.047
27 C -0.043 4.043
28 O -0.285 6.285
29 H 0.054 0.946
30 H 0.099 0.901
31 H 0.074 0.926
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.118 0.882
35 H 0.117 0.883
36 H 0.173 0.827
37 H 0.142 0.858
38 H 0.292 0.708
39 H 0.286 0.714
40 H 0.120 0.880
41 H 0.151 0.849
42 H 0.148 0.852
43 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 29.027 -7.367 3.059 30.103
hybrid contribution -1.160 -2.481 -0.269 2.751
sum 27.867 -9.847 2.790 29.687
Atomic orbital electron populations
1.71035 1.06704 1.28530 1.55241 1.27166 0.96443 1.04747 0.99239
0.83283 0.73434 0.71527 0.78348 1.17553 1.20052 1.23163 1.19935
0.80982 0.94395 1.46628 0.93713 1.45887 1.01513 1.04813 1.85933
1.23005 0.85897 0.93768 0.99390 1.22689 0.92941 0.97266 0.82654
1.23010 0.87402 0.93491 0.98301 1.21924 0.88464 0.91657 0.99226
1.48215 1.47596 1.30547 1.07956 1.20740 0.79446 0.82118 0.86612
1.90725 1.64753 1.73824 1.15392 1.21979 1.01725 0.95828 0.98187
1.21892 0.89656 0.93558 0.94731 0.83207 1.45728 1.33766 1.04271
1.53447 1.15976 0.80486 0.84286 0.78982 1.91057 1.54601 1.46660
1.54120 1.44249 1.29207 1.12666 1.47917 1.20664 0.83267 0.84615
0.78296 1.90883 1.24981 1.84528 1.34522 1.22692 0.97329 1.06607
0.78038 1.23294 0.91419 0.88273 1.01283 1.87950 1.76146 1.46070
1.18311 0.94609 0.90108 0.92630 0.94336 0.92644 0.88235 0.88291
0.82727 0.85829 0.70846 0.71392 0.87989 0.84873 0.85182 0.93685
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -64.09 13.70 21.65 0.30 -63.79 16
2 C -0.08 -5.18 5.50 84.86 0.47 -4.71 16
3 Si 1.11 53.76 25.13 68.60 1.72 55.49 16
4 H -0.25 -10.56 6.12 99.48 0.61 -9.95 16
5 H -0.27 -12.40 6.64 99.48 0.66 -11.74 16
6 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16
7 C -0.29 -17.55 11.08 84.04 0.93 -16.62 16
8 H 0.04 2.93 8.05 -2.91 -0.02 2.90 16
9 N -0.65 -32.14 3.70 -738.82 -2.73 -34.87 16
10 C 0.10 4.10 5.14 83.40 0.43 4.52 16
11 C 0.09 2.69 1.29 -10.82 -0.01 2.68 16
12 C 0.10 3.97 7.90 83.31 0.66 4.63 16
13 C 0.11 2.45 5.83 86.14 0.50 2.95 16
14 N -0.61 -9.63 3.03 -818.01 -2.48 -12.11 16
15 C 0.52 7.60 7.61 87.66 0.67 8.27 16
16 O -0.57 -12.00 14.49 -3.04 -0.04 -12.04 16
17 C -0.14 -0.87 3.84 29.85 0.11 -0.76 16
18 C 0.11 0.97 3.15 44.37 0.14 1.11 16
19 H 0.15 1.10 8.01 -2.39 -0.02 1.08 16
20 N -0.71 -9.62 5.88 -459.62 -2.70 -12.33 16
21 C 0.70 11.79 9.00 179.44 1.61 13.40 16
22 O -0.59 -15.31 18.04 -3.83 -0.07 -15.38 16
23 N -0.67 -7.05 5.72 -440.68 -2.52 -9.57 16
24 C 0.55 5.40 8.17 87.88 0.72 6.12 16
25 O -0.48 -6.78 18.02 -2.90 -0.05 -6.84 16
26 C 0.08 0.76 6.50 86.33 0.56 1.32 16
27 C 0.03 0.62 6.90 72.06 0.50 1.12 16
28 O -0.37 -11.23 10.55 -148.98 -1.57 -12.81 16
29 H 0.24 16.29 8.73 -92.71 -0.81 15.48 16
30 H 0.08 2.88 7.66 -2.39 -0.02 2.86 16
31 H 0.06 2.28 4.68 -2.39 -0.01 2.27 16
32 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16
33 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16
34 H 0.10 2.40 6.90 -2.38 -0.02 2.38 16
35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16
36 H 0.16 0.11 7.99 -2.38 -0.02 0.09 16
37 H 0.12 0.50 7.69 -2.39 -0.02 0.48 16
38 H 0.45 7.04 8.18 -92.71 -0.76 6.29 16
39 H 0.44 3.12 8.96 -92.71 -0.83 2.29 16
40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.13 0.29 6.04 -2.39 -0.01 0.27 16
42 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16
43 H 0.04 0.93 7.30 -2.39 -0.02 0.91 16
Total: -1.00 -87.59 349.93 -3.54 -91.13
By element:
Atomic # 1 Polarization: 9.76 SS G_CDS: -0.68 Total: 9.08 kcal
Atomic # 6 Polarization: 16.75 SS G_CDS: 7.28 Total: 24.03 kcal
Atomic # 7 Polarization: -122.53 SS G_CDS: -10.14 Total: -132.67 kcal
Atomic # 8 Polarization: -45.33 SS G_CDS: -1.74 Total: -47.07 kcal
Atomic # 14 Polarization: 53.76 SS G_CDS: 1.72 Total: 55.49 kcal
Total: -87.59 -3.54 -91.13 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053291265.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal
(2) G-P(sol) polarization free energy of solvation -87.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.103 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds