Wall clock time and date at job start Tue Mar 31 2020 20:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48502 * 109.46919 * 270.00224 * 3 2 1 5 5 H 1.48501 * 109.47184 * 30.00182 * 3 2 1 6 6 H 1.48495 * 109.46987 * 150.00260 * 3 2 1 7 7 C 1.38806 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.47669 * 134.45814 * 180.02562 * 9 7 2 11 11 C 1.53438 * 85.97816 * 204.26454 * 10 9 7 12 12 C 1.47666 * 134.45464 * 359.96011 * 9 7 2 13 13 C 1.52494 * 113.60179 * 222.52549 * 11 10 9 14 14 N 1.47340 * 108.26803 * 180.19472 * 13 11 10 15 15 C 1.34776 * 121.05161 * 228.35285 * 14 13 11 16 16 O 1.21273 * 120.00419 * 359.71363 * 15 14 13 17 17 C 1.50702 * 119.99592 * 179.71418 * 15 14 13 18 18 H 1.08999 * 109.45536 * 40.02933 * 17 15 14 19 19 C 1.53349 * 109.64763 * 279.94925 * 17 15 14 20 20 C 1.50811 * 109.09168 * 286.97601 * 19 17 15 21 21 O 1.21235 * 120.01714 * 145.58724 * 20 19 17 22 22 N 1.34554 * 119.96136 * 325.61437 * 20 19 17 23 23 C 1.34338 * 120.99362 * 4.43088 * 22 20 19 24 24 O 1.21538 * 119.21610 * 192.00250 * 23 22 20 25 25 N 1.34298 * 121.58038 * 12.01875 * 23 22 20 26 26 C 1.47130 * 117.89051 * 48.07303 * 14 13 11 27 27 C 1.53219 * 108.72938 * 308.03065 * 26 14 13 28 28 O 1.42489 * 113.80944 * 91.24996 * 11 10 9 29 29 H 0.96994 * 120.00094 * 359.97438 * 1 2 3 30 30 H 1.09002 * 113.78750 * 89.99639 * 10 9 7 31 31 H 1.08999 * 113.90120 * 318.54502 * 10 9 7 32 32 H 1.09000 * 113.79572 * 41.47180 * 12 9 7 33 33 H 1.09007 * 113.79137 * 270.00832 * 12 9 7 34 34 H 1.08996 * 109.69187 * 60.45366 * 13 11 10 35 35 H 1.09003 * 109.58116 * 299.86366 * 13 11 10 36 36 H 1.08998 * 109.69600 * 167.01279 * 19 17 15 37 37 H 1.09003 * 109.48905 * 46.80928 * 19 17 15 38 38 H 0.97001 * 119.50253 * 184.45489 * 22 20 19 39 39 H 0.97001 * 119.53415 * 185.66380 * 25 23 22 40 40 H 1.09007 * 109.59021 * 67.79935 * 26 14 13 41 41 H 1.09002 * 109.59587 * 188.24987 * 26 14 13 42 42 H 1.08996 * 109.49622 * 174.09362 * 27 26 14 43 43 H 1.09002 * 109.48884 * 294.16589 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7214 -3.8107 -0.0005 11 6 0.3483 -4.0810 -0.6295 12 6 -0.1042 -2.7567 0.0007 13 6 -0.3602 -5.2999 -0.0484 14 7 -1.6552 -5.4522 -0.7346 15 6 -2.7930 -5.6428 -0.0378 16 8 -2.7606 -5.6966 1.1733 17 6 -4.1055 -5.7892 -0.7637 18 1 -3.9599 -6.3942 -1.6587 19 6 -4.6312 -4.4050 -1.1628 20 6 -5.1323 -3.6938 0.0690 21 8 -5.0085 -2.4918 0.1679 22 7 -5.7164 -4.3940 1.0585 23 6 -5.7843 -5.7348 1.0102 24 8 -6.5019 -6.3211 1.7966 25 7 -5.0781 -6.4430 0.1139 26 6 -1.6677 -5.3832 -2.2042 27 6 -0.9486 -4.1033 -2.6428 28 8 0.3553 -4.0666 -2.0543 29 1 -0.4850 0.8400 0.0004 30 1 1.8393 -4.2343 0.9969 31 1 2.5593 -4.0360 -0.6603 32 1 -0.7173 -2.1425 -0.6589 33 1 -0.5291 -2.8669 0.9985 34 1 -0.5240 -5.1552 1.0194 35 1 0.2494 -6.1888 -0.2110 36 1 -5.4468 -4.5139 -1.8776 37 1 -3.8255 -3.8265 -1.6149 38 1 -6.0944 -3.9236 1.8179 39 1 -5.2113 -7.4017 0.0500 40 1 -1.1521 -6.2512 -2.6153 41 1 -2.6976 -5.3644 -2.5606 42 1 -0.8580 -4.0908 -3.7289 43 1 -1.5200 -3.2347 -2.3152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053451018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:45 Heat of formation + Delta-G solvation = -89.957941 kcal Electronic energy + Delta-G solvation = -31365.242129 eV Core-core repulsion = 27026.317042 eV Total energy + Delta-G solvation = -4338.925087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.99882 -41.63470 -40.17475 -40.00756 -37.79038 -37.00060 -35.84941 -35.39213 -34.30741 -32.27827 -31.31006 -29.49830 -28.28424 -26.89476 -26.30855 -24.68671 -24.56764 -23.63550 -21.79542 -20.70420 -20.18187 -19.32383 -18.92855 -18.79032 -18.33675 -17.63825 -17.47203 -17.23066 -16.96774 -16.73815 -16.34540 -15.95995 -15.82424 -15.68325 -15.54783 -15.34839 -15.03599 -14.88531 -14.58083 -14.19185 -14.12649 -13.51492 -13.44014 -13.29537 -13.01687 -12.87556 -12.78955 -12.53000 -12.04240 -11.98908 -11.94210 -11.75518 -11.63689 -11.48386 -11.42038 -11.26512 -10.98553 -10.81020 -10.31038 -9.56678 -8.97110 -7.92960 -5.27943 0.57746 1.26962 1.39696 1.41807 1.44902 1.53211 1.69759 2.08221 2.16907 2.43742 2.66800 3.13912 3.21022 3.24915 3.31955 3.37182 3.61062 3.78915 3.93388 3.98366 4.09729 4.19013 4.38111 4.41855 4.46215 4.63182 4.64473 4.69176 4.76940 4.83319 4.89482 5.00865 5.10793 5.15456 5.22389 5.25787 5.44415 5.73940 5.86554 6.10261 6.26041 6.38033 6.39623 6.85841 6.94200 7.07029 7.56692 8.49165 9.23047 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.003849 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.862067 B = 7273.514631 C = 8207.384089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.635 5.635 10 C 0.132 3.868 11 C 0.084 3.916 12 C 0.152 3.848 13 C 0.108 3.892 14 N -0.603 5.603 15 C 0.483 3.517 16 O -0.573 6.573 17 C 0.132 3.868 18 H 0.207 0.793 19 C -0.149 4.149 20 C 0.513 3.487 21 O -0.538 6.538 22 N -0.675 5.675 23 C 0.725 3.275 24 O -0.593 6.593 25 N -0.688 5.688 26 C 0.070 3.930 27 C 0.031 3.969 28 O -0.361 6.361 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.041 0.959 33 H -0.002 1.002 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.186 0.814 37 H 0.133 0.867 38 H 0.423 0.577 39 H 0.441 0.559 40 H 0.118 0.882 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -19.091 -11.734 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.361 5.361 10 C 0.007 3.993 11 C 0.042 3.958 12 C 0.026 3.974 13 C -0.016 4.016 14 N -0.336 5.336 15 C 0.270 3.730 16 O -0.451 6.451 17 C 0.023 3.977 18 H 0.224 0.776 19 C -0.188 4.188 20 C 0.302 3.698 21 O -0.412 6.412 22 N -0.343 5.343 23 C 0.425 3.575 24 O -0.471 6.471 25 N -0.347 5.347 26 C -0.051 4.051 27 C -0.046 4.046 28 O -0.279 6.279 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.203 0.797 37 H 0.151 0.849 38 H 0.264 0.736 39 H 0.284 0.716 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.970 -18.387 -10.909 23.590 hybrid contribution 0.130 1.626 1.402 2.151 sum -9.840 -16.761 -9.508 21.637 Atomic orbital electron populations 1.70036 1.06641 1.25493 1.58274 1.25659 0.96477 1.01026 1.02879 0.85061 0.77608 0.78843 0.77725 1.20759 1.22440 1.19112 1.19438 0.90917 0.83204 1.42662 0.89509 1.46198 1.03092 1.00702 1.86116 1.22721 0.94958 0.83777 0.97879 1.23003 0.97259 0.92914 0.82631 1.22503 0.87509 0.92204 0.95204 1.21912 0.84207 0.97928 0.97537 1.48281 1.06250 1.70417 1.08686 1.21857 0.86831 0.76324 0.88008 1.90765 1.86812 1.51501 1.16066 1.21499 0.84052 0.96614 0.95503 0.77629 1.22593 1.07157 0.93776 0.95304 1.21719 0.74993 0.87466 0.85607 1.90871 1.53685 1.16706 1.79968 1.44278 1.57164 1.07529 1.25346 1.15678 0.79927 0.81000 0.80855 1.91007 1.44585 1.69015 1.42458 1.44636 1.39592 1.12432 1.38039 1.22931 1.05300 0.99608 0.77263 1.23299 0.83968 0.96822 1.00479 1.87906 1.28868 1.94366 1.16746 0.94503 0.91647 0.91242 0.94109 0.98406 0.90749 0.87618 0.79676 0.84934 0.73628 0.71644 0.86436 0.84112 0.84247 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.83 11.39 21.65 0.25 -60.59 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.98 47.46 29.55 68.60 2.03 49.48 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.23 -13.65 10.70 84.03 0.90 -12.75 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.63 -33.91 3.70 -729.36 -2.70 -36.61 16 10 C 0.13 5.31 8.33 86.30 0.72 6.03 16 11 C 0.08 3.04 1.21 -10.62 -0.01 3.03 16 12 C 0.15 7.61 6.64 86.31 0.57 8.18 16 13 C 0.11 3.04 5.75 86.05 0.49 3.53 16 14 N -0.60 -12.54 3.03 -818.60 -2.48 -15.03 16 15 C 0.48 10.69 6.62 87.66 0.58 11.27 16 16 O -0.57 -19.20 15.63 -3.01 -0.05 -19.24 16 17 C 0.13 1.33 2.77 44.38 0.12 1.45 16 18 H 0.21 -0.73 6.85 -2.39 -0.02 -0.75 16 19 C -0.15 -1.78 5.29 30.00 0.16 -1.62 16 20 C 0.51 12.94 7.44 87.73 0.65 13.59 16 21 O -0.54 -19.44 17.93 -2.89 -0.05 -19.49 16 22 N -0.68 -16.68 5.18 -441.65 -2.29 -18.96 16 23 C 0.72 16.88 7.96 179.34 1.43 18.31 16 24 O -0.59 -17.89 17.97 -3.83 -0.07 -17.95 16 25 N -0.69 -9.43 4.91 -462.13 -2.27 -11.70 16 26 C 0.07 0.78 5.94 86.33 0.51 1.29 16 27 C 0.03 0.67 6.88 72.06 0.50 1.16 16 28 O -0.36 -11.96 10.52 -148.98 -1.57 -13.53 16 29 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.04 2.31 6.31 -2.39 -0.02 2.30 16 33 H 0.00 -0.10 7.92 -2.38 -0.02 -0.12 16 34 H 0.07 2.54 6.89 -2.39 -0.02 2.53 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.19 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.13 1.72 7.12 -2.39 -0.02 1.70 16 38 H 0.42 10.65 8.86 -92.71 -0.82 9.82 16 39 H 0.44 3.70 8.90 -92.71 -0.83 2.88 16 40 H 0.12 0.70 8.14 -2.38 -0.02 0.69 16 41 H 0.14 0.10 5.02 -2.39 -0.01 0.08 16 42 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.03 0.89 7.20 -2.39 -0.02 0.87 16 Total: -1.00 -99.97 352.18 -2.66 -102.62 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.55 Total: 11.09 kcal Atomic # 6 Polarization: 42.82 SS G_CDS: 7.09 Total: 49.91 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -9.49 Total: -142.89 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -1.73 Total: -70.21 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -99.97 -2.66 -102.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053451018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.663 kcal (2) G-P(sol) polarization free energy of solvation -99.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds