Wall clock time and date at job start Tue Mar 31 2020 20:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48500 * 109.46694 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46888 * 119.99926 * 3 2 1 7 7 C 1.38809 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45394 * 179.97438 * 9 7 2 11 11 C 1.53471 * 85.97038 * 155.71517 * 10 9 7 12 12 C 1.47673 * 134.45877 * 359.97438 * 9 7 2 13 13 C 1.52888 * 113.50577 * 137.68446 * 11 10 9 14 14 N 1.47343 * 108.08953 * 82.96508 * 13 11 10 15 15 C 1.34773 * 121.05560 * 228.39743 * 14 13 11 16 16 O 1.21286 * 119.99809 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00439 * 179.97438 * 15 14 13 18 18 N 1.46495 * 109.47550 * 179.97438 * 17 15 14 19 19 C 1.34772 * 124.17811 * 269.72652 * 18 17 15 20 20 O 1.21238 * 127.15315 * 0.02562 * 19 18 17 21 21 C 1.51585 * 105.68700 * 179.97438 * 19 18 17 22 22 N 1.47315 * 103.59215 * 0.32087 * 21 19 18 23 23 C 1.33790 * 124.17905 * 90.02494 * 18 17 15 24 24 O 1.21541 * 123.77074 * 359.96550 * 23 18 17 25 25 C 1.47225 * 117.82699 * 48.36642 * 14 13 11 26 26 C 1.53229 * 108.75936 * 307.81445 * 25 14 13 27 27 O 1.42497 * 113.75980 * 268.71101 * 11 10 9 28 28 H 0.96998 * 119.99175 * 0.02562 * 1 2 3 29 29 H 1.08995 * 113.79550 * 41.45362 * 10 9 7 30 30 H 1.09002 * 113.90087 * 269.98778 * 10 9 7 31 31 H 1.08998 * 113.78928 * 90.02397 * 12 9 7 32 32 H 1.09001 * 113.78663 * 318.56259 * 12 9 7 33 33 H 1.09002 * 109.74900 * 202.62871 * 13 11 10 34 34 H 1.09000 * 109.74573 * 323.30296 * 13 11 10 35 35 H 1.09004 * 109.47055 * 299.99899 * 17 15 14 36 36 H 1.09004 * 109.47070 * 59.99552 * 17 15 14 37 37 H 1.08996 * 110.76209 * 241.71757 * 21 19 18 38 38 H 1.08994 * 110.56467 * 118.83117 * 21 19 18 39 39 H 0.96993 * 126.69286 * 179.77536 * 22 21 19 40 40 H 1.08998 * 109.57421 * 188.02903 * 25 14 13 41 41 H 1.09001 * 109.58108 * 67.60151 * 25 14 13 42 42 H 1.08997 * 109.49177 * 294.16493 * 26 25 14 43 43 H 1.09000 * 109.51223 * 174.10422 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0005 11 6 0.3479 -4.0808 0.6302 12 6 -0.1045 -2.7567 0.0005 13 6 -0.3587 -5.3062 0.0500 14 7 0.1625 -6.5020 0.7352 15 6 0.5655 -7.5826 0.0380 16 8 0.5018 -7.5812 -1.1732 17 6 1.0952 -8.7927 0.7632 18 7 1.4628 -9.8236 -0.2106 19 6 0.6226 -10.7787 -0.6557 20 8 -0.5362 -10.9405 -0.3382 21 6 1.4274 -11.6078 -1.6369 22 7 2.7543 -10.9679 -1.6241 23 6 2.6758 -9.9367 -0.7637 24 8 3.6037 -9.1920 -0.5152 25 6 0.2291 -6.4770 2.2058 26 6 0.9777 -5.2138 2.6438 27 8 0.3568 -4.0668 2.0550 28 1 -0.4849 0.8401 -0.0004 29 1 2.5591 -4.0342 0.6608 30 1 1.8393 -4.2363 -0.9960 31 1 -0.5302 -2.8669 -0.9968 32 1 -0.7169 -2.1424 0.6606 33 1 -1.4328 -5.2252 0.2164 34 1 -0.1559 -5.3765 -1.0187 35 1 1.9733 -8.5122 1.3449 36 1 0.3263 -9.1817 1.4308 37 1 0.9886 -11.5607 -2.6335 38 1 1.4968 -12.6414 -1.2981 39 1 3.5326 -11.2373 -2.1364 40 1 0.7609 -7.3592 2.5623 41 1 -0.7802 -6.4649 2.6170 42 1 2.0155 -5.2740 2.3161 43 1 0.9436 -5.1285 3.7299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053527539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:55 Heat of formation + Delta-G solvation = -29.868056 kcal Electronic energy + Delta-G solvation = -30389.100123 eV Core-core repulsion = 26052.780729 eV Total energy + Delta-G solvation = -4336.319394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69282 -40.42905 -38.89827 -38.76571 -36.40495 -36.28471 -34.98965 -34.55568 -32.23762 -30.33289 -29.39517 -28.08350 -27.50674 -25.77364 -25.08046 -23.36939 -23.26945 -22.21456 -21.15016 -19.47902 -18.84773 -18.37051 -17.97524 -17.18261 -16.81622 -16.77869 -16.36400 -15.84294 -15.66876 -15.46960 -15.21170 -14.87585 -14.50107 -14.46621 -14.35816 -14.28580 -13.91476 -13.79192 -13.43462 -13.33915 -12.79176 -12.41813 -12.31397 -12.02575 -11.36867 -11.33497 -11.15020 -10.86973 -10.78997 -10.77059 -10.71711 -10.62851 -10.18788 -10.03279 -9.89961 -9.63672 -9.55312 -9.27951 -8.79454 -8.36293 -6.85050 -5.72208 -3.03978 1.29067 1.69423 2.42680 2.57072 2.76489 2.95284 3.44039 3.47403 3.48944 3.60656 4.02993 4.18952 4.32963 4.48034 4.56049 4.68766 4.73391 4.80192 4.85813 5.03879 5.08017 5.16028 5.20260 5.22353 5.38387 5.56752 5.69108 5.74901 5.83527 6.02486 6.26894 6.36040 6.37564 6.51431 6.58087 6.64505 6.96659 6.98005 7.20643 7.24026 7.53014 7.76461 7.81656 7.97884 8.02196 9.08257 9.74649 10.60955 11.45318 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.002764 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.103568 B =10127.876124 C =10578.550061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.102 3.898 11 C 0.052 3.948 12 C 0.183 3.817 13 C 0.100 3.900 14 N -0.606 5.606 15 C 0.504 3.496 16 O -0.530 6.530 17 C 0.101 3.899 18 N -0.562 5.562 19 C 0.526 3.474 20 O -0.467 6.467 21 C 0.066 3.934 22 N -0.728 5.728 23 C 0.706 3.294 24 O -0.535 6.535 25 C 0.070 3.930 26 C 0.044 3.956 27 O -0.334 6.334 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.442 0.558 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -26.883 2.478 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.024 4.024 11 C 0.010 3.990 12 C 0.057 3.943 13 C -0.023 4.023 14 N -0.340 5.340 15 C 0.290 3.710 16 O -0.406 6.406 17 C -0.024 4.024 18 N -0.308 5.308 19 C 0.313 3.687 20 O -0.336 6.336 21 C -0.061 4.061 22 N -0.393 5.393 23 C 0.407 3.593 24 O -0.408 6.408 25 C -0.053 4.053 26 C -0.034 4.034 27 O -0.251 6.251 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.287 0.713 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.607 -25.981 2.314 26.091 hybrid contribution 0.918 0.558 -0.425 1.155 sum 1.525 -25.423 1.889 25.538 Atomic orbital electron populations 1.69790 1.04980 1.25475 1.56628 1.24761 0.95692 0.97454 1.02410 0.86178 0.78455 0.83101 0.77886 1.21243 1.21532 1.21097 1.18935 0.90186 0.81777 1.43904 0.90313 1.45743 1.01846 0.99096 1.86070 1.23039 0.94967 0.87207 0.97225 1.23798 0.97935 0.95645 0.81601 1.22201 0.88977 0.86582 0.96511 1.22349 0.98390 0.82643 0.98912 1.48189 1.63404 1.15352 1.07096 1.20591 0.78125 0.84120 0.88145 1.90723 1.54732 1.81609 1.13552 1.21508 1.03965 0.86567 0.90345 1.45834 1.13134 1.29459 1.42347 1.20904 0.86194 0.80610 0.80948 1.90834 1.13859 1.70227 1.58710 1.22439 0.83131 0.98793 1.01774 1.45343 1.14377 1.32242 1.47351 1.15770 0.82381 0.81706 0.79463 1.91057 1.38837 1.45847 1.65021 1.22550 1.02609 1.00266 0.79853 1.22888 0.96366 0.85270 0.98908 1.88063 1.78730 1.40272 1.18037 0.93559 0.93728 0.94141 0.93849 0.89581 0.90552 0.88010 0.85470 0.85677 0.85676 0.85783 0.71302 0.89448 0.89850 0.92611 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.80 11.39 55.49 0.63 -27.17 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -16.12 3.70 -180.30 -0.67 -16.79 16 10 C 0.10 2.26 8.08 -3.17 -0.03 2.23 16 11 C 0.05 1.03 1.21 -90.30 -0.11 0.92 16 12 C 0.18 4.42 6.90 -3.18 -0.02 4.40 16 13 C 0.10 1.65 5.78 -3.64 -0.02 1.63 16 14 N -0.61 -8.41 3.03 -172.35 -0.52 -8.93 16 15 C 0.50 7.24 7.78 -10.99 -0.09 7.15 16 16 O -0.53 -9.62 15.93 5.55 0.09 -9.53 16 17 C 0.10 1.03 4.55 -5.20 -0.02 1.01 16 18 N -0.56 -5.96 2.09 -122.02 -0.26 -6.21 16 19 C 0.53 4.91 8.32 -10.55 -0.09 4.82 16 20 O -0.47 -5.59 17.75 5.59 0.10 -5.49 16 21 C 0.07 0.31 7.97 -4.31 -0.03 0.27 16 22 N -0.73 -4.68 6.58 -65.73 -0.43 -5.11 16 23 C 0.71 7.89 8.62 -88.01 -0.76 7.13 16 24 O -0.54 -8.09 17.48 5.33 0.09 -7.99 16 25 C 0.07 0.73 6.51 -3.53 -0.02 0.71 16 26 C 0.04 0.58 6.88 37.28 0.26 0.83 16 27 O -0.33 -6.35 10.52 -35.23 -0.37 -6.72 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.04 0.97 7.27 -51.93 -0.38 0.59 16 30 H 0.04 0.91 7.94 -51.93 -0.41 0.49 16 31 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.09 2.31 7.17 -51.93 -0.37 1.94 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 35 H 0.13 1.10 7.41 -51.93 -0.38 0.72 16 36 H 0.13 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.44 1.72 8.96 -40.82 -0.37 1.36 16 40 H 0.09 0.58 6.04 -51.93 -0.31 0.27 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.77 7.19 -51.93 -0.37 0.40 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -40.24 359.84 -7.57 -47.82 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.45 Total: -1.20 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: -1.19 Total: 24.23 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -1.25 Total: -64.22 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.09 Total: -29.73 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.24 -7.57 -47.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053527539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.947 kcal (2) G-P(sol) polarization free energy of solvation -40.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds