Wall clock time and date at job start Tue Mar 31 2020 20:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00203 * 2 1 4 4 H 1.48500 * 109.46694 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46888 * 119.99926 * 3 2 1 7 7 C 1.38809 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45394 * 179.97438 * 9 7 2 11 11 C 1.53471 * 85.97038 * 155.71517 * 10 9 7 12 12 C 1.47673 * 134.45877 * 359.97438 * 9 7 2 13 13 C 1.52888 * 113.50577 * 137.68446 * 11 10 9 14 14 N 1.47343 * 108.08953 * 82.96508 * 13 11 10 15 15 C 1.34773 * 121.05560 * 228.39743 * 14 13 11 16 16 O 1.21286 * 119.99809 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00439 * 179.97438 * 15 14 13 18 18 N 1.46495 * 109.47550 * 179.97438 * 17 15 14 19 19 C 1.34772 * 124.17811 * 269.72652 * 18 17 15 20 20 O 1.21238 * 127.15315 * 0.02562 * 19 18 17 21 21 C 1.51585 * 105.68700 * 179.97438 * 19 18 17 22 22 N 1.47315 * 103.59215 * 0.32087 * 21 19 18 23 23 C 1.33790 * 124.17905 * 90.02494 * 18 17 15 24 24 O 1.21541 * 123.77074 * 359.96550 * 23 18 17 25 25 C 1.47225 * 117.82699 * 48.36642 * 14 13 11 26 26 C 1.53229 * 108.75936 * 307.81445 * 25 14 13 27 27 O 1.42497 * 113.75980 * 268.71101 * 11 10 9 28 28 H 0.96998 * 119.99175 * 0.02562 * 1 2 3 29 29 H 1.08995 * 113.79550 * 41.45362 * 10 9 7 30 30 H 1.09002 * 113.90087 * 269.98778 * 10 9 7 31 31 H 1.08998 * 113.78928 * 90.02397 * 12 9 7 32 32 H 1.09001 * 113.78663 * 318.56259 * 12 9 7 33 33 H 1.09002 * 109.74900 * 202.62871 * 13 11 10 34 34 H 1.09000 * 109.74573 * 323.30296 * 13 11 10 35 35 H 1.09004 * 109.47055 * 299.99899 * 17 15 14 36 36 H 1.09004 * 109.47070 * 59.99552 * 17 15 14 37 37 H 1.08996 * 110.76209 * 241.71757 * 21 19 18 38 38 H 1.08994 * 110.56467 * 118.83117 * 21 19 18 39 39 H 0.96993 * 126.69286 * 179.77536 * 22 21 19 40 40 H 1.08998 * 109.57421 * 188.02903 * 25 14 13 41 41 H 1.09001 * 109.58108 * 67.60151 * 25 14 13 42 42 H 1.08997 * 109.49177 * 294.16493 * 26 25 14 43 43 H 1.09000 * 109.51223 * 174.10422 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0005 11 6 0.3479 -4.0808 0.6302 12 6 -0.1045 -2.7567 0.0005 13 6 -0.3587 -5.3062 0.0500 14 7 0.1625 -6.5020 0.7352 15 6 0.5655 -7.5826 0.0380 16 8 0.5018 -7.5812 -1.1732 17 6 1.0952 -8.7927 0.7632 18 7 1.4628 -9.8236 -0.2106 19 6 0.6226 -10.7787 -0.6557 20 8 -0.5362 -10.9405 -0.3382 21 6 1.4274 -11.6078 -1.6369 22 7 2.7543 -10.9679 -1.6241 23 6 2.6758 -9.9367 -0.7637 24 8 3.6037 -9.1920 -0.5152 25 6 0.2291 -6.4770 2.2058 26 6 0.9777 -5.2138 2.6438 27 8 0.3568 -4.0668 2.0550 28 1 -0.4849 0.8401 -0.0004 29 1 2.5591 -4.0342 0.6608 30 1 1.8393 -4.2363 -0.9960 31 1 -0.5302 -2.8669 -0.9968 32 1 -0.7169 -2.1424 0.6606 33 1 -1.4328 -5.2252 0.2164 34 1 -0.1559 -5.3765 -1.0187 35 1 1.9733 -8.5122 1.3449 36 1 0.3263 -9.1817 1.4308 37 1 0.9886 -11.5607 -2.6335 38 1 1.4968 -12.6414 -1.2981 39 1 3.5326 -11.2373 -2.1364 40 1 0.7609 -7.3592 2.5623 41 1 -0.7802 -6.4649 2.6170 42 1 2.0155 -5.2740 2.3161 43 1 0.9436 -5.1285 3.7299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053527539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:54 Heat of formation + Delta-G solvation = -63.695929 kcal Electronic energy + Delta-G solvation = -30390.567009 eV Core-core repulsion = 26052.780729 eV Total energy + Delta-G solvation = -4337.786281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.41577 -41.74633 -40.15052 -39.68108 -37.82016 -37.21781 -35.85448 -35.71613 -34.29262 -31.76315 -30.32760 -29.27437 -28.54785 -27.26113 -26.92198 -24.65684 -24.01606 -23.72587 -22.17937 -20.73536 -20.13546 -19.11127 -18.89627 -18.84297 -17.99408 -17.68325 -17.51618 -17.07307 -16.97672 -16.46875 -16.28305 -16.19768 -15.96710 -15.75519 -15.30032 -15.14807 -15.09461 -14.99878 -14.89421 -14.24207 -14.17978 -14.03147 -13.41950 -13.33749 -13.09346 -12.94715 -12.75851 -12.50836 -12.19847 -12.13267 -11.97661 -11.80291 -11.70948 -11.44566 -11.39295 -11.02657 -10.82885 -10.70065 -10.41070 -9.63893 -8.98205 -7.93393 -5.27901 0.60296 0.97672 1.36065 1.42923 1.47469 1.53604 1.67262 2.02388 2.27988 2.43965 2.66018 3.03084 3.20227 3.24475 3.31076 3.51146 3.71007 3.76233 3.94493 4.01528 4.11643 4.22740 4.27935 4.30516 4.32299 4.40643 4.50241 4.60881 4.64976 4.66896 4.68774 4.85005 4.93350 5.11131 5.17094 5.20141 5.43333 5.81683 5.86846 5.95914 6.15748 6.33685 6.35807 6.86653 6.88346 7.06985 7.54953 8.48214 9.23384 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.002764 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.103568 B =10127.876124 C =10578.550061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.103 3.897 11 C 0.086 3.914 12 C 0.177 3.823 13 C 0.110 3.890 14 N -0.607 5.607 15 C 0.498 3.502 16 O -0.576 6.576 17 C 0.102 3.898 18 N -0.569 5.569 19 C 0.518 3.482 20 O -0.498 6.498 21 C 0.075 3.925 22 N -0.709 5.709 23 C 0.697 3.303 24 O -0.585 6.585 25 C 0.072 3.928 26 C 0.034 3.966 27 O -0.363 6.363 28 H 0.251 0.749 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.455 0.545 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -29.659 3.486 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.811 3.189 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.357 5.357 10 C -0.023 4.023 11 C 0.044 3.956 12 C 0.052 3.948 13 C -0.014 4.014 14 N -0.340 5.340 15 C 0.286 3.714 16 O -0.456 6.456 17 C -0.023 4.023 18 N -0.314 5.314 19 C 0.308 3.692 20 O -0.369 6.369 21 C -0.050 4.050 22 N -0.374 5.374 23 C 0.398 3.602 24 O -0.462 6.462 25 C -0.049 4.049 26 C -0.043 4.043 27 O -0.282 6.282 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.302 0.698 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.065 0.935 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.130 -28.844 3.328 29.057 hybrid contribution 0.771 1.347 -0.722 1.712 sum 1.901 -27.497 2.606 27.686 Atomic orbital electron populations 1.69989 1.06407 1.25934 1.57557 1.25658 0.96674 1.00873 1.02405 0.85091 0.77175 0.78435 0.78224 1.20423 1.21509 1.20116 1.19327 0.90672 0.83270 1.43773 0.90278 1.46110 1.03187 1.00167 1.86252 1.23114 0.96814 0.84997 0.97337 1.23108 0.95454 0.94639 0.82406 1.22096 0.87617 0.88982 0.96138 1.21960 0.98790 0.82744 0.97888 1.48266 1.62926 1.14243 1.08594 1.21398 0.77094 0.85046 0.87850 1.90696 1.56527 1.82586 1.15744 1.21675 1.05394 0.84970 0.90284 1.46000 1.13309 1.29637 1.42479 1.21648 0.85950 0.80512 0.81059 1.90820 1.15114 1.71070 1.59932 1.22733 0.81001 0.99632 1.01682 1.45348 1.15650 1.30706 1.45680 1.16037 0.81990 0.82190 0.80008 1.91019 1.40324 1.47910 1.66911 1.22816 1.04112 1.00531 0.77452 1.23294 0.95872 0.84675 1.00442 1.88002 1.79476 1.43668 1.17019 0.93993 0.93402 0.94455 0.94420 0.92806 0.89125 0.89883 0.83763 0.82418 0.83357 0.81324 0.69818 0.84811 0.87848 0.93491 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 11.39 21.65 0.25 -59.03 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.98 47.52 29.55 68.60 2.03 49.54 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.24 -14.54 10.70 84.03 0.90 -13.64 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.63 -35.09 3.70 -729.20 -2.70 -37.79 16 10 C 0.10 4.70 8.08 86.31 0.70 5.40 16 11 C 0.09 3.46 1.21 -10.49 -0.01 3.44 16 12 C 0.18 9.00 6.90 86.30 0.60 9.60 16 13 C 0.11 3.65 5.78 86.18 0.50 4.15 16 14 N -0.61 -15.91 3.03 -817.59 -2.48 -18.39 16 15 C 0.50 13.69 7.78 87.66 0.68 14.37 16 16 O -0.58 -20.98 15.93 -3.05 -0.05 -21.02 16 17 C 0.10 1.82 4.55 85.63 0.39 2.21 16 18 N -0.57 -10.95 2.09 -777.21 -1.63 -12.57 16 19 C 0.52 8.41 8.32 87.94 0.73 9.14 16 20 O -0.50 -10.90 17.75 -2.90 -0.05 -10.96 16 21 C 0.08 0.42 7.97 85.76 0.68 1.11 16 22 N -0.71 -7.27 6.58 -480.30 -3.16 -10.43 16 23 C 0.70 14.55 8.62 179.44 1.55 16.09 16 24 O -0.59 -17.45 17.48 -3.84 -0.07 -17.51 16 25 C 0.07 1.26 6.51 86.32 0.56 1.82 16 26 C 0.03 0.82 6.88 72.06 0.50 1.31 16 27 O -0.36 -13.71 10.52 -148.98 -1.57 -15.28 16 28 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.05 2.12 7.27 -2.39 -0.02 2.11 16 30 H 0.04 1.74 7.94 -2.39 -0.02 1.72 16 31 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.05 3.05 7.17 -2.39 -0.02 3.03 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.08 3.09 6.91 -2.39 -0.02 3.07 16 35 H 0.14 2.09 7.41 -2.39 -0.02 2.07 16 36 H 0.16 1.74 7.85 -2.38 -0.02 1.73 16 37 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.45 2.36 8.96 -92.71 -0.83 1.53 16 40 H 0.13 1.12 6.04 -2.39 -0.01 1.11 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.23 7.19 -2.39 -0.02 1.21 16 43 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -93.44 359.84 -0.95 -94.38 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.24 Total: 7.33 kcal Atomic # 6 Polarization: 43.49 SS G_CDS: 8.24 Total: 51.73 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -9.72 Total: -138.21 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -1.73 Total: -64.77 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -93.44 -0.95 -94.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053527539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -93.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds