Wall clock time and date at job start Tue Mar 31 2020 20:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48508 * 109.46917 * 90.00343 * 3 2 1 5 5 H 1.48507 * 109.47219 * 210.00053 * 3 2 1 6 6 H 1.48489 * 109.47419 * 330.00294 * 3 2 1 7 7 C 1.38812 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 15.33414 * 7 2 1 9 9 N 1.36932 * 120.00030 * 195.33190 * 7 2 1 10 10 C 1.47219 * 135.96894 * 7.43726 * 9 7 2 11 11 C 1.52915 * 87.68399 * 153.66664 * 10 9 7 12 12 C 1.47221 * 135.96750 * 187.80522 * 9 7 2 13 13 C 1.53324 * 115.72799 * 270.12189 * 11 10 9 14 14 C 1.55028 * 103.78549 * 229.63602 * 13 11 10 15 15 H 1.09006 * 110.86977 * 139.01568 * 14 13 11 16 16 N 1.46498 * 110.87255 * 262.69923 * 14 13 11 17 17 C 1.34782 * 119.99603 * 204.99905 * 16 14 13 18 18 O 1.21278 * 120.00072 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99625 * 179.97438 * 17 16 14 20 20 C 1.52994 * 109.46833 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.53713 * 52.17512 * 20 19 17 22 22 N 1.47310 * 110.60034 * 289.17081 * 20 19 17 23 23 C 1.34525 * 106.62260 * 241.47733 * 22 20 19 24 24 O 1.21541 * 123.77276 * 180.02562 * 23 22 20 25 25 N 1.33796 * 112.45716 * 359.97438 * 23 22 20 26 26 C 1.34758 * 111.64448 * 0.02562 * 25 23 22 27 27 O 1.21233 * 127.16100 * 179.97438 * 26 25 23 28 28 C 1.55066 * 102.13265 * 20.85967 * 14 13 11 29 29 O 1.42842 * 115.81398 * 141.74587 * 11 10 9 30 30 H 0.96998 * 120.00068 * 174.91148 * 1 2 3 31 31 H 1.08997 * 113.50241 * 268.34923 * 10 9 7 32 32 H 1.09005 * 113.49615 * 38.89391 * 10 9 7 33 33 H 1.09007 * 113.50227 * 321.11000 * 12 9 7 34 34 H 1.08997 * 113.50359 * 91.58957 * 12 9 7 35 35 H 1.09000 * 110.56399 * 348.21552 * 13 11 10 36 36 H 1.09006 * 110.55836 * 111.06751 * 13 11 10 37 37 H 0.96991 * 120.00155 * 24.99818 * 16 14 13 38 38 H 1.09005 * 109.47275 * 300.00488 * 19 17 16 39 39 H 1.09003 * 109.46938 * 60.00329 * 19 17 16 40 40 H 0.97005 * 126.68917 * 61.45984 * 22 20 19 41 41 H 0.97000 * 124.17497 * 180.02562 * 25 23 22 42 42 H 1.09005 * 110.58211 * 82.02462 * 28 14 13 43 43 H 1.08997 * 110.58345 * 204.78217 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4002 5 1 3.5479 1.4402 -0.7001 6 1 1.4478 2.6526 -0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4991 -2.1207 -0.2483 9 7 3.3430 -1.2234 0.3130 10 6 4.3273 -0.2519 0.8177 11 6 5.1040 -1.4342 1.3985 12 6 4.4206 -2.2262 0.2869 13 6 4.7271 -1.8402 2.8282 14 6 6.0915 -1.9285 3.5589 15 1 6.0233 -1.5054 4.5612 16 7 6.5697 -3.3124 3.6064 17 6 7.4203 -3.6985 4.5781 18 8 7.7894 -2.9003 5.4132 19 6 7.9117 -5.1223 4.6273 20 6 8.8571 -5.2946 5.8178 21 1 8.3881 -4.9350 6.7336 22 7 10.1301 -4.5946 5.5742 23 6 11.0939 -5.5330 5.5875 24 8 12.2732 -5.2928 5.4173 25 7 10.6095 -6.7601 5.8101 26 6 9.2709 -6.7455 5.9650 27 8 8.5479 -7.6951 6.1776 28 6 7.0029 -1.0599 2.6536 29 8 6.5272 -1.3433 1.3178 30 1 -0.4850 -0.8367 -0.0745 31 1 4.8632 0.2742 0.0277 32 1 3.9251 0.4203 1.5757 33 1 4.0973 -3.2200 0.5969 34 1 4.9812 -2.2376 -0.6478 35 1 4.0950 -1.0806 3.2879 36 1 4.2276 -2.8091 2.8318 37 1 6.2741 -3.9508 2.9387 38 1 7.0621 -5.7963 4.7378 39 1 8.4428 -5.3554 3.7044 40 1 10.2501 -3.6426 5.4317 41 1 11.1544 -7.5613 5.8545 42 1 6.8800 -0.0025 2.8880 43 1 8.0460 -1.3568 2.7625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053831785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:07 Heat of formation + Delta-G solvation = -54.509075 kcal Electronic energy + Delta-G solvation = -29321.001595 eV Core-core repulsion = 24983.613686 eV Total energy + Delta-G solvation = -4337.387909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.88233 -40.73314 -39.60035 -39.11102 -36.93711 -36.59731 -34.72501 -34.48301 -32.42034 -31.83786 -30.34354 -28.54233 -26.24850 -25.87830 -25.49715 -23.27324 -22.47733 -21.67877 -21.48862 -20.77830 -19.21639 -18.88890 -17.98888 -17.54983 -17.25409 -17.18813 -16.73873 -16.36072 -16.03889 -15.95966 -15.46203 -15.21760 -15.11668 -14.66500 -14.51435 -14.41593 -13.91089 -13.63352 -13.46624 -13.35448 -13.01411 -12.59323 -12.29888 -11.84223 -11.61617 -11.57399 -11.53495 -11.39724 -11.04721 -10.90787 -10.84757 -10.71634 -10.45984 -10.29000 -10.01554 -9.95827 -9.48101 -9.33626 -8.94101 -8.78205 -7.29108 -6.39399 -3.32635 1.01394 1.91652 2.14822 2.48014 2.53069 2.82768 3.35364 3.43140 3.44437 3.57740 3.87064 3.92489 4.26006 4.31225 4.47773 4.52151 4.69472 4.77743 4.79515 4.83004 4.86696 4.96642 5.02213 5.24684 5.35011 5.48806 5.53509 5.61690 5.81183 5.97716 6.09164 6.19347 6.21546 6.22657 6.23435 6.30894 6.41760 6.44778 6.82554 6.98276 7.08402 7.21758 7.65838 7.75732 8.14942 8.87965 9.40699 10.25838 11.10594 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.002254 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.394249 B =12418.265045 C =12871.526965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.021 4.021 3 Si 1.059 2.941 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.294 1.294 7 C -0.305 4.305 8 H 0.084 0.916 9 N -0.615 5.615 10 C 0.091 3.909 11 C 0.056 3.944 12 C 0.129 3.871 13 C -0.119 4.119 14 C 0.107 3.893 15 H 0.110 0.890 16 N -0.708 5.708 17 C 0.520 3.480 18 O -0.542 6.542 19 C -0.147 4.147 20 C 0.109 3.891 21 H 0.141 0.859 22 N -0.711 5.711 23 C 0.702 3.298 24 O -0.543 6.543 25 N -0.679 5.679 26 C 0.530 3.470 27 O -0.462 6.462 28 C 0.039 3.961 29 O -0.359 6.359 30 H 0.262 0.738 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.407 0.593 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.447 0.553 41 H 0.434 0.566 42 H 0.071 0.929 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.295 -11.541 12.262 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.221 4.221 3 Si 0.891 3.109 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.221 1.221 7 C -0.431 4.431 8 H 0.101 0.899 9 N -0.345 5.345 10 C -0.035 4.035 11 C 0.016 3.984 12 C 0.003 3.997 13 C -0.157 4.157 14 C 0.002 3.998 15 H 0.128 0.872 16 N -0.359 5.359 17 C 0.305 3.695 18 O -0.420 6.420 19 C -0.188 4.188 20 C 0.000 4.000 21 H 0.158 0.842 22 N -0.377 5.377 23 C 0.401 3.599 24 O -0.417 6.417 25 N -0.351 5.351 26 C 0.315 3.685 27 O -0.331 6.331 28 C -0.040 4.040 29 O -0.276 6.276 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.242 0.758 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.293 0.707 41 H 0.276 0.724 42 H 0.090 0.910 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.383 -9.675 12.682 25.103 hybrid contribution 0.148 -1.843 -0.515 1.919 sum 19.531 -11.518 12.167 25.732 Atomic orbital electron populations 1.70913 1.05391 1.29646 1.51030 1.25780 0.96463 1.00896 0.98933 0.83817 0.74691 0.75885 0.76556 1.22057 1.20682 1.22123 1.20080 0.79955 0.96068 1.47008 0.89873 1.45966 1.03603 1.07934 1.77043 1.23121 0.89940 0.93656 0.96747 1.23662 0.79759 0.99568 0.95454 1.22376 0.88413 0.93989 0.94950 1.22723 0.95334 1.04249 0.93356 1.22668 0.94037 0.81861 1.01257 0.87219 1.45926 1.47096 1.12424 1.30422 1.20253 0.78663 0.89473 0.81070 1.90727 1.57537 1.54472 1.39240 1.21911 1.01048 0.96537 0.99275 1.21776 0.87044 0.89338 1.01877 0.84207 1.45626 1.05453 1.10606 1.76024 1.15909 0.85433 0.80892 0.77699 1.91079 1.14238 1.81841 1.54499 1.44318 1.10706 1.11598 1.68442 1.20728 0.82110 0.91014 0.74665 1.90882 1.57305 1.40639 1.44261 1.23942 0.98584 0.98769 0.82661 1.88787 1.19886 1.91611 1.27318 0.92759 0.92889 0.92801 0.93246 0.93830 0.88502 0.89272 0.75822 0.85824 0.87227 0.70683 0.72377 0.91049 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.70 55.49 0.76 -27.68 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 1.06 25.88 25.51 -169.99 -4.34 21.55 16 4 H -0.29 -6.79 6.97 56.52 0.39 -6.40 16 5 H -0.28 -6.45 5.65 56.52 0.32 -6.13 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.31 -8.41 11.03 -15.06 -0.17 -8.57 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 N -0.62 -14.35 3.58 -184.66 -0.66 -15.01 16 10 C 0.09 1.85 5.12 -7.91 -0.04 1.81 16 11 C 0.06 0.91 1.66 -90.68 -0.15 0.76 16 12 C 0.13 2.40 8.20 -8.05 -0.07 2.33 16 13 C -0.12 -1.56 6.11 -25.49 -0.16 -1.71 16 14 C 0.11 1.11 3.51 -65.77 -0.23 0.88 16 15 H 0.11 1.14 7.55 -51.93 -0.39 0.75 16 16 N -0.71 -5.73 5.15 -51.71 -0.27 -6.00 16 17 C 0.52 3.93 7.75 -10.98 -0.09 3.85 16 18 O -0.54 -5.51 14.89 5.56 0.08 -5.43 16 19 C -0.15 -0.68 5.45 -27.88 -0.15 -0.83 16 20 C 0.11 0.58 3.14 -68.20 -0.21 0.36 16 21 H 0.14 0.69 7.89 -51.93 -0.41 0.28 16 22 N -0.71 -4.45 5.96 -59.19 -0.35 -4.80 16 23 C 0.70 5.52 8.99 -88.02 -0.79 4.73 16 24 O -0.54 -6.40 18.04 5.33 0.10 -6.30 16 25 N -0.68 -3.82 5.70 -15.79 -0.09 -3.91 16 26 C 0.53 3.25 8.14 -10.55 -0.09 3.16 16 27 O -0.46 -4.06 18.02 5.60 0.10 -3.96 16 28 C 0.04 0.44 7.42 38.25 0.28 0.72 16 29 O -0.36 -5.30 11.32 -35.23 -0.40 -5.70 16 30 H 0.26 7.91 8.73 -40.82 -0.36 7.56 16 31 H 0.05 1.11 6.98 -51.93 -0.36 0.75 16 32 H 0.05 1.11 6.08 -51.93 -0.32 0.79 16 33 H 0.05 0.84 7.91 -51.93 -0.41 0.43 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.36 7.82 -51.93 -0.41 0.96 16 36 H 0.09 1.12 7.70 -51.93 -0.40 0.72 16 37 H 0.41 2.76 8.63 -40.82 -0.35 2.40 16 38 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.45 2.86 8.48 -40.82 -0.35 2.51 16 41 H 0.43 1.68 8.96 -40.82 -0.37 1.31 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -35.65 359.15 -7.14 -42.80 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.54 Total: 2.24 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.95 Total: 6.80 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.61 Total: -57.40 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.12 Total: -21.39 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -4.34 Total: 21.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.65 -7.14 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053831785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.713 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds