Wall clock time and date at job start Tue Mar 31 2020 20:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48508 * 109.46917 * 90.00343 * 3 2 1 5 5 H 1.48507 * 109.47219 * 210.00053 * 3 2 1 6 6 H 1.48489 * 109.47419 * 330.00294 * 3 2 1 7 7 C 1.38812 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 15.33414 * 7 2 1 9 9 N 1.36932 * 120.00030 * 195.33190 * 7 2 1 10 10 C 1.47219 * 135.96894 * 7.43726 * 9 7 2 11 11 C 1.52915 * 87.68399 * 153.66664 * 10 9 7 12 12 C 1.47221 * 135.96750 * 187.80522 * 9 7 2 13 13 C 1.53324 * 115.72799 * 270.12189 * 11 10 9 14 14 C 1.55028 * 103.78549 * 229.63602 * 13 11 10 15 15 H 1.09006 * 110.86977 * 139.01568 * 14 13 11 16 16 N 1.46498 * 110.87255 * 262.69923 * 14 13 11 17 17 C 1.34782 * 119.99603 * 204.99905 * 16 14 13 18 18 O 1.21278 * 120.00072 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99625 * 179.97438 * 17 16 14 20 20 C 1.52994 * 109.46833 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.53713 * 52.17512 * 20 19 17 22 22 N 1.47310 * 110.60034 * 289.17081 * 20 19 17 23 23 C 1.34525 * 106.62260 * 241.47733 * 22 20 19 24 24 O 1.21541 * 123.77276 * 180.02562 * 23 22 20 25 25 N 1.33796 * 112.45716 * 359.97438 * 23 22 20 26 26 C 1.34758 * 111.64448 * 0.02562 * 25 23 22 27 27 O 1.21233 * 127.16100 * 179.97438 * 26 25 23 28 28 C 1.55066 * 102.13265 * 20.85967 * 14 13 11 29 29 O 1.42842 * 115.81398 * 141.74587 * 11 10 9 30 30 H 0.96998 * 120.00068 * 174.91148 * 1 2 3 31 31 H 1.08997 * 113.50241 * 268.34923 * 10 9 7 32 32 H 1.09005 * 113.49615 * 38.89391 * 10 9 7 33 33 H 1.09007 * 113.50227 * 321.11000 * 12 9 7 34 34 H 1.08997 * 113.50359 * 91.58957 * 12 9 7 35 35 H 1.09000 * 110.56399 * 348.21552 * 13 11 10 36 36 H 1.09006 * 110.55836 * 111.06751 * 13 11 10 37 37 H 0.96991 * 120.00155 * 24.99818 * 16 14 13 38 38 H 1.09005 * 109.47275 * 300.00488 * 19 17 16 39 39 H 1.09003 * 109.46938 * 60.00329 * 19 17 16 40 40 H 0.97005 * 126.68917 * 61.45984 * 22 20 19 41 41 H 0.97000 * 124.17497 * 180.02562 * 25 23 22 42 42 H 1.09005 * 110.58211 * 82.02462 * 28 14 13 43 43 H 1.08997 * 110.58345 * 204.78217 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4002 5 1 3.5479 1.4402 -0.7001 6 1 1.4478 2.6526 -0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4991 -2.1207 -0.2483 9 7 3.3430 -1.2234 0.3130 10 6 4.3273 -0.2519 0.8177 11 6 5.1040 -1.4342 1.3985 12 6 4.4206 -2.2262 0.2869 13 6 4.7271 -1.8402 2.8282 14 6 6.0915 -1.9285 3.5589 15 1 6.0233 -1.5054 4.5612 16 7 6.5697 -3.3124 3.6064 17 6 7.4203 -3.6985 4.5781 18 8 7.7894 -2.9003 5.4132 19 6 7.9117 -5.1223 4.6273 20 6 8.8571 -5.2946 5.8178 21 1 8.3881 -4.9350 6.7336 22 7 10.1301 -4.5946 5.5742 23 6 11.0939 -5.5330 5.5875 24 8 12.2732 -5.2928 5.4173 25 7 10.6095 -6.7601 5.8101 26 6 9.2709 -6.7455 5.9650 27 8 8.5479 -7.6951 6.1776 28 6 7.0029 -1.0599 2.6536 29 8 6.5272 -1.3433 1.3178 30 1 -0.4850 -0.8367 -0.0745 31 1 4.8632 0.2742 0.0277 32 1 3.9251 0.4203 1.5757 33 1 4.0973 -3.2200 0.5969 34 1 4.9812 -2.2376 -0.6478 35 1 4.0950 -1.0806 3.2879 36 1 4.2276 -2.8091 2.8318 37 1 6.2741 -3.9508 2.9387 38 1 7.0621 -5.7963 4.7378 39 1 8.4428 -5.3554 3.7044 40 1 10.2501 -3.6426 5.4317 41 1 11.1544 -7.5613 5.8545 42 1 6.8800 -0.0025 2.8880 43 1 8.0460 -1.3568 2.7625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053831785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:06 Heat of formation + Delta-G solvation = -87.066421 kcal Electronic energy + Delta-G solvation = -29322.413387 eV Core-core repulsion = 24983.613686 eV Total energy + Delta-G solvation = -4338.799701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.43129 -41.81780 -40.47566 -39.73937 -38.20022 -37.33530 -35.54383 -35.02993 -34.49666 -32.49431 -31.21605 -30.06419 -27.34657 -27.12078 -26.70080 -23.84190 -23.41823 -23.07145 -22.23256 -21.45370 -20.71826 -19.47343 -19.44647 -18.59455 -17.96529 -17.83841 -17.53124 -17.27355 -16.90193 -16.65365 -16.51505 -16.20807 -16.13189 -15.84320 -15.44526 -15.28247 -15.24942 -15.01401 -14.56412 -14.25112 -13.98660 -13.72738 -13.43536 -12.98612 -12.82388 -12.71976 -12.59369 -12.40326 -12.33857 -12.22811 -11.95208 -11.70357 -11.51092 -11.47594 -11.40034 -10.94212 -10.87652 -10.56536 -10.52933 -9.97500 -9.27300 -8.62101 -5.47664 0.47769 1.39171 1.40322 1.50800 1.56922 1.65190 1.89931 1.97576 2.25708 2.51745 2.69561 2.92420 3.08540 3.19813 3.43431 3.44690 3.51610 3.58806 3.85384 3.89782 3.99343 4.36191 4.36848 4.49802 4.53870 4.64626 4.65297 4.66942 4.68033 4.75146 4.79388 4.82352 4.95922 5.02977 5.05395 5.16947 5.43657 5.76534 5.86923 5.94760 6.00313 6.33556 6.50096 6.68905 7.08845 7.17060 7.31519 8.25199 8.89694 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.002254 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.394249 B =12418.265045 C =12871.526965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.080 4.080 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.304 1.304 7 C -0.286 4.286 8 H 0.056 0.944 9 N -0.644 5.644 10 C 0.079 3.921 11 C 0.085 3.915 12 C 0.126 3.874 13 C -0.116 4.116 14 C 0.122 3.878 15 H 0.115 0.885 16 N -0.706 5.706 17 C 0.523 3.477 18 O -0.567 6.567 19 C -0.138 4.138 20 C 0.113 3.887 21 H 0.149 0.851 22 N -0.703 5.703 23 C 0.705 3.295 24 O -0.585 6.585 25 N -0.669 5.669 26 C 0.541 3.459 27 O -0.486 6.486 28 C 0.034 3.966 29 O -0.365 6.365 30 H 0.249 0.751 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.415 0.585 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.448 0.552 41 H 0.442 0.558 42 H 0.078 0.922 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.389 -12.133 13.360 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.273 4.273 3 Si 0.922 3.078 4 H -0.200 1.200 5 H -0.186 1.186 6 H -0.232 1.232 7 C -0.414 4.414 8 H 0.074 0.926 9 N -0.374 5.374 10 C -0.046 4.046 11 C 0.044 3.956 12 C 0.001 3.999 13 C -0.154 4.154 14 C 0.016 3.984 15 H 0.133 0.867 16 N -0.357 5.357 17 C 0.310 3.690 18 O -0.446 6.446 19 C -0.179 4.179 20 C 0.003 3.997 21 H 0.166 0.834 22 N -0.368 5.368 23 C 0.404 3.596 24 O -0.462 6.462 25 N -0.340 5.340 26 C 0.327 3.673 27 O -0.356 6.356 28 C -0.043 4.043 29 O -0.283 6.283 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.294 0.706 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.518 -10.318 13.790 27.562 hybrid contribution -0.424 -1.763 -0.854 2.004 sum 21.094 -12.081 12.936 27.536 Atomic orbital electron populations 1.71010 1.06671 1.28911 1.54554 1.26929 0.96495 1.04211 0.99615 0.83361 0.74300 0.72435 0.77730 1.19966 1.18616 1.23160 1.19932 0.82286 0.94808 1.44348 0.92572 1.45963 1.03328 1.10763 1.77344 1.23315 0.89770 0.94746 0.96755 1.23138 0.80509 0.95985 0.96001 1.22549 0.87077 0.94199 0.96103 1.22674 0.96848 1.04269 0.91640 1.22396 0.92045 0.83100 1.00809 0.86729 1.45859 1.47256 1.11621 1.30954 1.20635 0.77893 0.90272 0.80184 1.90731 1.58326 1.55461 1.40092 1.21905 1.01613 0.94800 0.99546 1.21846 0.86608 0.88467 1.02742 0.83361 1.45625 1.05536 1.10496 1.75118 1.15951 0.84964 0.81455 0.77239 1.91056 1.16055 1.82507 1.56542 1.44197 1.10765 1.11340 1.67689 1.20697 0.81807 0.90964 0.73810 1.90887 1.57723 1.41491 1.45496 1.24168 0.99455 0.99546 0.81148 1.88779 1.18507 1.91509 1.29498 0.94190 0.93319 0.92976 0.91513 0.93636 0.89380 0.88531 0.74817 0.83786 0.85609 0.70590 0.71452 0.90432 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.70 21.65 0.30 -60.65 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 1.10 52.25 25.51 68.60 1.75 54.00 16 4 H -0.27 -12.03 6.97 99.48 0.69 -11.34 16 5 H -0.26 -11.44 5.65 99.48 0.56 -10.88 16 6 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 7 C -0.29 -15.96 11.03 84.03 0.93 -15.03 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 9 N -0.64 -29.45 3.58 -739.24 -2.65 -32.10 16 10 C 0.08 3.08 5.12 83.48 0.43 3.51 16 11 C 0.08 2.52 1.66 -10.83 -0.02 2.50 16 12 C 0.13 4.43 8.20 83.39 0.68 5.11 16 13 C -0.12 -2.74 6.11 31.40 0.19 -2.55 16 14 C 0.12 2.14 3.51 46.39 0.16 2.31 16 15 H 0.11 2.01 7.55 -2.38 -0.02 1.99 16 16 N -0.71 -8.84 5.15 -435.91 -2.24 -11.08 16 17 C 0.52 6.08 7.75 87.66 0.68 6.76 16 18 O -0.57 -9.77 14.89 -3.02 -0.05 -9.82 16 19 C -0.14 -0.77 5.45 29.85 0.16 -0.60 16 20 C 0.11 0.86 3.14 44.37 0.14 1.00 16 21 H 0.15 1.02 7.89 -2.39 -0.02 1.00 16 22 N -0.70 -7.25 5.96 -459.60 -2.74 -9.99 16 23 C 0.70 9.98 8.99 179.44 1.61 11.60 16 24 O -0.58 -13.33 18.04 -3.84 -0.07 -13.40 16 25 N -0.67 -6.31 5.70 -441.12 -2.52 -8.83 16 26 C 0.54 5.35 8.14 87.94 0.72 6.06 16 27 O -0.49 -7.46 18.02 -2.88 -0.05 -7.51 16 28 C 0.03 0.67 7.42 72.69 0.54 1.21 16 29 O -0.37 -9.64 11.32 -148.98 -1.69 -11.32 16 30 H 0.25 15.69 8.73 -92.71 -0.81 14.88 16 31 H 0.05 1.95 6.98 -2.39 -0.02 1.93 16 32 H 0.05 2.04 6.08 -2.38 -0.01 2.03 16 33 H 0.07 2.11 7.91 -2.38 -0.02 2.09 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.29 7.82 -2.39 -0.02 2.27 16 36 H 0.10 2.15 7.70 -2.38 -0.02 2.14 16 37 H 0.42 3.98 8.63 -92.71 -0.80 3.18 16 38 H 0.14 0.33 8.14 -2.38 -0.02 0.32 16 39 H 0.13 0.38 8.14 -2.39 -0.02 0.37 16 40 H 0.45 4.78 8.48 -92.70 -0.79 4.00 16 41 H 0.44 2.75 8.96 -92.71 -0.83 1.92 16 42 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.36 359.15 -4.77 -83.13 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -1.51 Total: 9.87 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.69 Total: 17.70 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -9.85 Total: -122.64 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.85 Total: -42.06 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 1.75 Total: 54.00 kcal Total: -78.36 -4.77 -83.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053831785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.937 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds