Wall clock time and date at job start Tue Mar 31 2020 20:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 119.99854 * 2 1 4 4 H 1.48501 * 109.47067 * 239.99724 * 3 2 1 5 5 H 1.48504 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 119.99633 * 3 2 1 7 7 C 1.38812 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00148 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.47771 * 134.41196 * 179.97438 * 9 7 2 11 11 C 1.52940 * 85.80626 * 156.10079 * 10 9 7 12 12 C 1.47777 * 134.40710 * 0.02727 * 9 7 2 13 13 C 1.54002 * 115.15376 * 266.50284 * 11 10 9 14 14 C 1.55479 * 100.78343 * 194.49247 * 13 11 10 15 15 H 1.09002 * 110.82654 * 274.89712 * 14 13 11 16 16 N 1.46506 * 110.99636 * 151.41207 * 14 13 11 17 17 C 1.34774 * 119.99512 * 157.83760 * 16 14 13 18 18 O 1.21280 * 120.00599 * 359.97438 * 17 16 14 19 19 C 1.50707 * 119.99586 * 179.97438 * 17 16 14 20 20 C 1.52996 * 109.47061 * 179.97438 * 19 17 16 21 21 H 1.09006 * 110.53155 * 54.30493 * 20 19 17 22 22 N 1.47305 * 110.60282 * 291.47455 * 20 19 17 23 23 C 1.34867 * 106.43859 * 241.51961 * 22 20 19 24 24 O 1.21536 * 123.73067 * 179.97438 * 23 22 20 25 25 N 1.33790 * 112.50154 * 359.86577 * 23 22 20 26 26 C 1.34772 * 111.64558 * 0.08482 * 25 23 22 27 27 O 1.21226 * 127.16161 * 180.02562 * 26 25 23 28 28 C 1.54468 * 102.37068 * 33.11712 * 14 13 11 29 29 O 1.42551 * 116.18765 * 141.03088 * 11 10 9 30 30 H 0.96999 * 120.00546 * 0.02562 * 1 2 3 31 31 H 1.09002 * 113.81771 * 41.87960 * 10 9 7 32 32 H 1.09004 * 113.92751 * 270.33412 * 10 9 7 33 33 H 1.09004 * 113.81467 * 89.67752 * 12 9 7 34 34 H 1.08998 * 113.81870 * 318.12472 * 12 9 7 35 35 H 1.09000 * 111.15250 * 76.60994 * 13 11 10 36 36 H 1.08998 * 111.15433 * 312.37611 * 13 11 10 37 37 H 0.96993 * 120.00106 * 337.83770 * 16 14 13 38 38 H 1.08995 * 109.47033 * 299.99940 * 19 17 16 39 39 H 1.08999 * 109.47015 * 60.00297 * 19 17 16 40 40 H 0.96999 * 126.69834 * 61.44344 * 22 20 19 41 41 H 0.97003 * 124.18414 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.83369 * 98.13837 * 28 14 13 43 43 H 1.09000 * 109.83114 * 219.03072 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.7228 -3.8114 0.0005 11 6 0.3496 -4.0785 0.6185 12 6 -0.1056 -2.7558 -0.0004 13 6 0.3221 -4.1245 2.1576 14 6 -1.0690 -4.7736 2.4044 15 1 -1.8552 -4.0187 2.4000 16 7 -1.0810 -5.5277 3.6604 17 6 -2.2494 -5.7832 4.2818 18 8 -3.2907 -5.3885 3.8014 19 6 -2.2618 -6.5593 5.5735 20 6 -3.7030 -6.7083 6.0651 21 1 -4.3283 -7.1483 5.2883 22 7 -4.2433 -5.4052 6.4892 23 6 -4.5396 -5.5232 7.7997 24 8 -5.0086 -4.6237 8.4692 25 7 -4.2622 -6.7408 8.2798 26 6 -3.7519 -7.5463 7.3274 27 8 -3.4047 -8.7009 7.4537 28 6 -1.2113 -5.7218 1.1933 29 8 -0.3267 -5.2492 0.1666 30 1 -0.4851 0.8400 -0.0004 31 1 2.5563 -4.0358 0.6662 32 1 1.8473 -4.2357 -0.9958 33 1 -0.5325 -2.8604 -0.9979 34 1 -0.7173 -2.1460 0.6644 35 1 0.3691 -3.1216 2.5820 36 1 1.1237 -4.7522 2.5467 37 1 -0.2482 -5.8430 4.0448 38 1 -1.8300 -7.5464 5.4085 39 1 -1.6759 -6.0270 6.3229 40 1 -4.3610 -4.6182 5.9346 41 1 -4.4094 -7.0103 9.1999 42 1 -0.9340 -6.7354 1.4826 43 1 -2.2397 -5.7086 0.8322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053831786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:12 Heat of formation + Delta-G solvation = -60.384234 kcal Electronic energy + Delta-G solvation = -29171.528983 eV Core-core repulsion = 24833.886308 eV Total energy + Delta-G solvation = -4337.642675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80993 -40.46774 -39.40602 -39.05985 -36.71108 -36.31688 -34.77099 -34.43378 -32.13880 -31.73087 -30.08333 -28.18947 -26.16497 -25.83850 -24.98830 -23.20683 -22.39216 -22.06268 -21.44674 -20.75943 -18.85700 -18.80775 -17.92228 -17.18891 -17.08523 -16.83413 -16.50864 -16.24219 -15.95011 -15.52987 -15.43262 -15.17088 -14.76280 -14.66801 -14.38398 -14.27297 -13.79504 -13.46852 -13.45770 -12.95989 -12.75841 -12.47520 -12.02491 -11.72654 -11.52399 -11.52009 -11.18365 -10.96619 -10.89670 -10.86414 -10.81447 -10.77381 -10.41063 -10.22811 -10.06376 -9.92912 -9.61569 -9.29762 -8.86632 -8.81894 -6.97264 -5.83073 -3.16586 1.05285 1.96593 2.22161 2.53498 2.58457 2.86967 3.35795 3.40106 3.41863 3.48418 3.91288 4.13102 4.28465 4.37120 4.45399 4.60093 4.82125 4.89580 5.02734 5.05876 5.10989 5.16976 5.25073 5.30621 5.49009 5.52743 5.78683 5.86127 6.01012 6.20349 6.26380 6.34428 6.38952 6.48285 6.51979 6.62217 6.87083 6.95868 7.14238 7.15545 7.44349 7.62540 7.72308 7.83354 7.90061 8.97439 9.63511 10.50548 11.33844 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002363 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.218953 B =11845.892336 C =12983.612257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.056 3.944 12 C 0.157 3.843 13 C -0.121 4.121 14 C 0.110 3.890 15 H 0.109 0.891 16 N -0.712 5.712 17 C 0.518 3.482 18 O -0.535 6.535 19 C -0.145 4.145 20 C 0.109 3.891 21 H 0.140 0.860 22 N -0.711 5.711 23 C 0.701 3.299 24 O -0.541 6.541 25 N -0.679 5.679 26 C 0.531 3.469 27 O -0.464 6.464 28 C 0.046 3.954 29 O -0.368 6.368 30 H 0.256 0.744 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.449 0.551 41 H 0.434 0.566 42 H 0.064 0.936 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 -17.275 14.159 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.352 4.352 8 H 0.099 0.901 9 N -0.333 5.333 10 C 0.003 3.997 11 C 0.015 3.985 12 C 0.032 3.968 13 C -0.159 4.159 14 C 0.006 3.994 15 H 0.127 0.873 16 N -0.363 5.363 17 C 0.303 3.697 18 O -0.412 6.412 19 C -0.186 4.186 20 C -0.001 4.001 21 H 0.157 0.843 22 N -0.378 5.378 23 C 0.400 3.600 24 O -0.415 6.415 25 N -0.350 5.350 26 C 0.316 3.684 27 O -0.333 6.333 28 C -0.032 4.032 29 O -0.286 6.286 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.296 0.704 41 H 0.276 0.724 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.127 -16.857 13.937 22.714 hybrid contribution 0.746 1.007 0.345 1.300 sum -5.381 -15.850 14.282 22.003 Atomic orbital electron populations 1.69803 1.05013 1.25657 1.56100 1.24801 0.95698 0.97584 1.02188 0.86185 0.78480 0.83019 0.77962 1.21113 1.21508 1.21041 1.18917 0.90203 0.81527 1.44516 0.90108 1.45728 1.02232 0.99132 1.86214 1.22551 0.93006 0.86344 0.97790 1.24199 0.95537 0.86457 0.92283 1.22556 0.88321 0.88036 0.97937 1.22969 0.94332 1.02709 0.95926 1.22708 1.00225 0.93854 0.82650 0.87261 1.45902 1.08989 1.56657 1.24780 1.20270 0.84081 0.79964 0.85361 1.90752 1.31576 1.52033 1.66813 1.21904 0.95844 1.03972 0.96926 1.21764 0.97061 0.84663 0.96648 0.84262 1.45742 1.67235 1.15460 1.09348 1.16005 0.78759 0.82212 0.83062 1.91080 1.48195 1.40900 1.61282 1.44313 1.61319 1.13804 1.15587 1.20725 0.75402 0.86229 0.86054 1.90870 1.45225 1.14194 1.83019 1.23436 0.94913 0.96946 0.87921 1.88324 1.57518 1.43993 1.38758 0.93441 0.93294 0.93862 0.94671 0.90586 0.88194 0.90457 0.76143 0.85892 0.87338 0.70424 0.72395 0.91771 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 11.40 55.49 0.63 -25.97 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.03 3.69 -183.21 -0.68 -15.71 16 10 C 0.13 2.60 8.49 -3.38 -0.03 2.57 16 11 C 0.06 1.02 1.47 -90.30 -0.13 0.89 16 12 C 0.16 3.65 6.99 -3.37 -0.02 3.63 16 13 C -0.12 -1.77 6.04 -24.89 -0.15 -1.92 16 14 C 0.11 1.39 3.33 -65.84 -0.22 1.17 16 15 H 0.11 1.61 7.63 -51.93 -0.40 1.21 16 16 N -0.71 -6.08 5.13 -51.78 -0.27 -6.34 16 17 C 0.52 4.36 7.74 -10.98 -0.08 4.28 16 18 O -0.53 -6.29 14.77 5.56 0.08 -6.21 16 19 C -0.15 -0.71 5.46 -27.88 -0.15 -0.86 16 20 C 0.11 0.63 3.14 -68.21 -0.21 0.42 16 21 H 0.14 0.75 7.96 -51.93 -0.41 0.34 16 22 N -0.71 -5.23 5.94 -59.10 -0.35 -5.58 16 23 C 0.70 6.10 9.00 -87.72 -0.79 5.31 16 24 O -0.54 -6.90 18.04 5.33 0.10 -6.80 16 25 N -0.68 -4.14 5.70 -15.71 -0.09 -4.23 16 26 C 0.53 3.40 8.14 -10.55 -0.09 3.32 16 27 O -0.46 -4.09 18.02 5.60 0.10 -3.99 16 28 C 0.05 0.62 7.57 37.93 0.29 0.91 16 29 O -0.37 -6.37 11.17 -35.23 -0.39 -6.76 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.91 7.16 -51.93 -0.37 1.53 16 35 H 0.10 1.68 8.05 -51.93 -0.42 1.26 16 36 H 0.08 0.94 7.99 -51.93 -0.42 0.52 16 37 H 0.40 2.34 8.54 -40.82 -0.35 1.99 16 38 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.45 3.60 8.30 -40.82 -0.34 3.26 16 41 H 0.43 1.84 8.96 -40.82 -0.37 1.47 16 42 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -35.12 365.88 -7.79 -42.91 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.56 Total: 3.37 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.85 Total: 13.19 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.75 Total: -57.83 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.11 Total: -23.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.12 -7.79 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053831786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.473 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds