Wall clock time and date at job start Tue Mar 31 2020 20:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48502 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47141 * 300.00088 * 3 2 1 6 6 H 1.48494 * 109.47310 * 59.99892 * 3 2 1 7 7 C 1.38815 * 119.99470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99403 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.47210 * 135.97302 * 179.97438 * 9 7 2 11 11 C 1.52704 * 87.86272 * 206.39269 * 10 9 7 12 12 C 1.47209 * 135.97118 * 359.95407 * 9 7 2 13 13 C 1.53659 * 115.26539 * 219.28023 * 11 10 9 14 14 C 1.55493 * 101.96603 * 206.90241 * 13 11 10 15 15 H 1.08999 * 111.13702 * 275.52677 * 14 13 11 16 16 N 1.46504 * 111.10447 * 151.43360 * 14 13 11 17 17 C 1.34771 * 119.99888 * 161.88413 * 16 14 13 18 18 O 1.21286 * 120.00218 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99981 * 179.97438 * 17 16 14 20 20 H 1.09000 * 109.46377 * 40.00275 * 19 17 16 21 21 C 1.53045 * 109.46211 * 280.02028 * 19 17 16 22 22 C 1.50783 * 109.19718 * 286.68740 * 21 19 17 23 23 O 1.21237 * 120.02439 * 145.74047 * 22 21 19 24 24 N 1.34559 * 119.96098 * 325.76561 * 22 21 19 25 25 C 1.34344 * 120.99057 * 4.43517 * 24 22 21 26 26 O 1.21537 * 119.21259 * 192.00099 * 25 24 22 27 27 N 1.34293 * 121.58033 * 12.01968 * 25 24 22 28 28 C 1.55017 * 101.04476 * 33.48722 * 14 13 11 29 29 O 1.42402 * 116.14002 * 90.73415 * 11 10 9 30 30 H 0.97002 * 119.99761 * 359.97438 * 1 2 3 31 31 H 1.09002 * 113.50029 * 321.15872 * 10 9 7 32 32 H 1.08997 * 113.49592 * 91.63286 * 10 9 7 33 33 H 1.09001 * 113.49691 * 268.30035 * 12 9 7 34 34 H 1.08995 * 113.50212 * 38.77921 * 12 9 7 35 35 H 1.09002 * 110.93075 * 325.07023 * 13 11 10 36 36 H 1.09002 * 110.93025 * 88.73421 * 13 11 10 37 37 H 0.96995 * 119.99684 * 341.88348 * 16 14 13 38 38 H 1.08994 * 109.51952 * 46.59288 * 21 19 17 39 39 H 1.09000 * 109.51826 * 166.76899 * 21 19 17 40 40 H 0.97003 * 119.50713 * 184.46124 * 24 22 21 41 41 H 0.96993 * 119.53439 * 185.71800 * 27 25 24 42 42 H 1.09000 * 110.30114 * 205.04742 * 28 14 13 43 43 H 1.09001 * 110.29857 * 82.90172 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.6822 -3.8163 -0.0015 11 6 0.3417 -4.0920 -0.6789 12 6 -0.0898 -2.7931 0.0007 13 6 -0.3872 -5.3571 -0.2000 14 6 -1.2324 -5.7346 -1.4493 15 1 -2.1724 -5.1832 -1.4692 16 7 -1.4705 -7.1790 -1.5083 17 6 -2.4611 -7.6676 -2.2805 18 8 -3.1558 -6.9116 -2.9262 19 6 -2.7056 -9.1534 -2.3417 20 1 -2.5898 -9.5819 -1.3461 21 6 -1.6961 -9.7975 -3.2947 22 6 -2.0668 -9.4545 -4.7154 23 8 -1.1989 -9.2872 -5.5453 24 7 -3.3614 -9.3337 -5.0617 25 6 -4.3353 -9.4271 -4.1410 26 8 -5.4893 -9.5340 -4.5070 27 7 -4.0643 -9.4046 -2.8259 28 6 -0.2922 -5.2766 -2.5935 29 8 0.3448 -4.0831 -2.1029 30 1 -0.4850 0.8401 0.0004 31 1 2.5424 -4.0491 -0.6291 32 1 1.7606 -4.2453 0.9975 33 1 -0.4984 -2.9418 1.0003 34 1 -0.7227 -2.1631 -0.6242 35 1 0.3231 -6.1474 0.0430 36 1 -1.0296 -5.1371 0.6528 37 1 -0.9151 -7.7835 -0.9917 38 1 -0.6974 -9.4188 -3.0776 39 1 -1.7122 -10.8797 -3.1653 40 1 -3.5951 -9.1773 -5.9901 41 1 -4.7787 -9.5574 -2.1878 42 1 -0.8691 -5.0555 -3.4915 43 1 0.4528 -6.0447 -2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053941933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:46 Heat of formation + Delta-G solvation = -62.543926 kcal Electronic energy + Delta-G solvation = -29726.932271 eV Core-core repulsion = 25389.195945 eV Total energy + Delta-G solvation = -4337.736326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29111 -40.41809 -39.42884 -39.23219 -36.61570 -36.12499 -34.79351 -34.67692 -32.14925 -31.76724 -30.41625 -28.28110 -26.34698 -25.72600 -24.80420 -23.93136 -22.65812 -21.74776 -21.24886 -20.32957 -19.14565 -18.68248 -18.49877 -17.66393 -16.89753 -16.81994 -16.58023 -16.28788 -15.60315 -15.39969 -15.28180 -15.01240 -14.79267 -14.61817 -14.52327 -14.02600 -13.69570 -13.49305 -13.21846 -13.17465 -13.03061 -12.94204 -12.01137 -11.95571 -11.65510 -11.26143 -11.23784 -11.10781 -10.89758 -10.84153 -10.73431 -10.61336 -10.49651 -10.22958 -9.91153 -9.72133 -9.49930 -9.36908 -8.84092 -8.69652 -6.88075 -5.74383 -3.06456 1.25557 1.87787 2.10796 2.36828 2.75649 2.81357 3.41335 3.46086 3.49176 3.63828 3.76463 3.98747 4.15496 4.25414 4.40706 4.46475 4.51141 4.69087 4.89886 4.95310 5.17445 5.19244 5.37871 5.39180 5.59140 5.73248 5.75715 5.78142 5.85843 5.95033 6.14434 6.22669 6.32482 6.49298 6.56009 6.76201 6.88433 7.01087 7.03348 7.19785 7.52055 7.67982 7.73266 7.75392 8.00141 9.05310 9.72368 10.63549 11.43496 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002290 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.956516 B =12222.567257 C =12303.460542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.215 4.215 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.113 3.887 11 C 0.056 3.944 12 C 0.153 3.847 13 C -0.140 4.140 14 C 0.111 3.889 15 H 0.109 0.891 16 N -0.709 5.709 17 C 0.487 3.513 18 O -0.512 6.512 19 C 0.122 3.878 20 H 0.138 0.862 21 C -0.150 4.150 22 C 0.523 3.477 23 O -0.492 6.492 24 N -0.670 5.670 25 C 0.725 3.275 26 O -0.552 6.552 27 N -0.707 5.707 28 C 0.042 3.958 29 O -0.331 6.331 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.403 0.597 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.429 0.571 41 H 0.429 0.571 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -26.678 -0.869 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.100 0.900 9 N -0.327 5.327 10 C -0.014 4.014 11 C 0.015 3.985 12 C 0.027 3.973 13 C -0.179 4.179 14 C 0.006 3.994 15 H 0.126 0.874 16 N -0.363 5.363 17 C 0.270 3.730 18 O -0.386 6.386 19 C 0.012 3.988 20 H 0.155 0.845 21 C -0.191 4.191 22 C 0.310 3.690 23 O -0.363 6.363 24 N -0.340 5.340 25 C 0.426 3.574 26 O -0.426 6.426 27 N -0.366 5.366 28 C -0.037 4.037 29 O -0.248 6.248 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.270 0.730 41 H 0.269 0.731 42 H 0.103 0.897 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.619 -25.520 -2.061 26.212 hybrid contribution 0.324 0.551 0.449 0.781 sum -5.295 -24.969 -1.612 25.575 Atomic orbital electron populations 1.69832 1.05020 1.25235 1.56534 1.24796 0.95716 0.97541 1.02439 0.86017 0.78690 0.83630 0.77247 1.20447 1.21650 1.21766 1.18939 0.90108 0.81270 1.43898 0.90023 1.45372 1.02355 0.99131 1.85884 1.22680 0.94945 0.87318 0.96465 1.23405 0.98401 0.95046 0.81662 1.22389 0.89583 0.89204 0.96154 1.23137 0.98724 0.98593 0.97447 1.22853 1.00450 0.79941 0.96119 0.87354 1.45863 1.34425 1.08423 1.47547 1.21034 0.80948 0.90809 0.80250 1.90823 1.46443 1.59163 1.42150 1.21083 0.83362 0.93233 1.01127 0.84475 1.22262 1.01577 1.05097 0.90153 1.20732 0.81978 0.75133 0.91168 1.90839 1.47718 1.45355 1.52432 1.44160 1.06904 1.69473 1.13437 1.15510 0.84320 0.76360 0.81254 1.91056 1.18321 1.54225 1.79039 1.44726 1.10566 1.75667 1.05618 1.23739 0.94302 0.88564 0.97054 1.88513 1.78644 1.39055 1.18637 0.93696 0.93585 0.93944 0.94560 0.90341 0.90086 0.89041 0.76164 0.85009 0.85158 0.72981 0.73115 0.89744 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.82 11.51 55.49 0.64 -27.18 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.21 -6.17 10.74 -15.06 -0.16 -6.33 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.73 3.79 -184.49 -0.70 -16.43 16 10 C 0.11 2.26 8.20 -8.07 -0.07 2.20 16 11 C 0.06 1.03 1.75 -90.53 -0.16 0.87 16 12 C 0.15 3.57 6.87 -8.01 -0.06 3.51 16 13 C -0.14 -1.67 6.03 -25.06 -0.15 -1.82 16 14 C 0.11 1.29 3.37 -65.54 -0.22 1.07 16 15 H 0.11 1.50 7.74 -51.93 -0.40 1.10 16 16 N -0.71 -5.01 5.24 -51.49 -0.27 -5.28 16 17 C 0.49 4.01 6.71 -10.99 -0.07 3.94 16 18 O -0.51 -6.93 15.90 5.55 0.09 -6.84 16 19 C 0.12 0.45 3.63 -69.11 -0.25 0.19 16 20 H 0.14 -0.15 8.14 -51.93 -0.42 -0.57 16 21 C -0.15 -0.51 5.71 -27.82 -0.16 -0.67 16 22 C 0.52 4.35 7.44 -11.04 -0.08 4.27 16 23 O -0.49 -5.87 17.93 5.59 0.10 -5.77 16 24 N -0.67 -5.83 5.18 -16.02 -0.08 -5.91 16 25 C 0.73 6.83 7.98 -87.74 -0.70 6.13 16 26 O -0.55 -7.20 17.97 5.33 0.10 -7.10 16 27 N -0.71 -4.11 4.91 -60.11 -0.29 -4.40 16 28 C 0.04 0.61 7.49 38.22 0.29 0.89 16 29 O -0.33 -6.57 11.17 -35.23 -0.39 -6.97 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.04 0.82 7.95 -51.93 -0.41 0.41 16 34 H 0.08 2.12 7.15 -51.93 -0.37 1.75 16 35 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 36 H 0.09 1.03 7.82 -51.93 -0.41 0.63 16 37 H 0.40 1.27 8.51 -40.82 -0.35 0.92 16 38 H 0.13 0.30 8.07 -51.93 -0.42 -0.12 16 39 H 0.13 0.04 8.14 -51.93 -0.42 -0.39 16 40 H 0.43 3.55 8.86 -40.82 -0.36 3.19 16 41 H 0.43 1.75 8.90 -40.82 -0.36 1.39 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -41.37 363.84 -7.82 -49.19 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.58 Total: -0.26 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -1.89 Total: 13.93 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.71 Total: -59.20 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.11 Total: -26.68 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.37 -7.82 -49.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.351 kcal (2) G-P(sol) polarization free energy of solvation -41.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds