Wall clock time and date at job start Tue Mar 31 2020 20:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48502 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47141 * 300.00088 * 3 2 1 6 6 H 1.48494 * 109.47310 * 59.99892 * 3 2 1 7 7 C 1.38815 * 119.99470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99403 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.47210 * 135.97302 * 179.97438 * 9 7 2 11 11 C 1.52704 * 87.86272 * 206.39269 * 10 9 7 12 12 C 1.47209 * 135.97118 * 359.95407 * 9 7 2 13 13 C 1.53659 * 115.26539 * 219.28023 * 11 10 9 14 14 C 1.55493 * 101.96603 * 206.90241 * 13 11 10 15 15 H 1.08999 * 111.13702 * 275.52677 * 14 13 11 16 16 N 1.46504 * 111.10447 * 151.43360 * 14 13 11 17 17 C 1.34771 * 119.99888 * 161.88413 * 16 14 13 18 18 O 1.21286 * 120.00218 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99981 * 179.97438 * 17 16 14 20 20 H 1.09000 * 109.46377 * 40.00275 * 19 17 16 21 21 C 1.53045 * 109.46211 * 280.02028 * 19 17 16 22 22 C 1.50783 * 109.19718 * 286.68740 * 21 19 17 23 23 O 1.21237 * 120.02439 * 145.74047 * 22 21 19 24 24 N 1.34559 * 119.96098 * 325.76561 * 22 21 19 25 25 C 1.34344 * 120.99057 * 4.43517 * 24 22 21 26 26 O 1.21537 * 119.21259 * 192.00099 * 25 24 22 27 27 N 1.34293 * 121.58033 * 12.01968 * 25 24 22 28 28 C 1.55017 * 101.04476 * 33.48722 * 14 13 11 29 29 O 1.42402 * 116.14002 * 90.73415 * 11 10 9 30 30 H 0.97002 * 119.99761 * 359.97438 * 1 2 3 31 31 H 1.09002 * 113.50029 * 321.15872 * 10 9 7 32 32 H 1.08997 * 113.49592 * 91.63286 * 10 9 7 33 33 H 1.09001 * 113.49691 * 268.30035 * 12 9 7 34 34 H 1.08995 * 113.50212 * 38.77921 * 12 9 7 35 35 H 1.09002 * 110.93075 * 325.07023 * 13 11 10 36 36 H 1.09002 * 110.93025 * 88.73421 * 13 11 10 37 37 H 0.96995 * 119.99684 * 341.88348 * 16 14 13 38 38 H 1.08994 * 109.51952 * 46.59288 * 21 19 17 39 39 H 1.09000 * 109.51826 * 166.76899 * 21 19 17 40 40 H 0.97003 * 119.50713 * 184.46124 * 24 22 21 41 41 H 0.96993 * 119.53439 * 185.71800 * 27 25 24 42 42 H 1.09000 * 110.30114 * 205.04742 * 28 14 13 43 43 H 1.09001 * 110.29857 * 82.90172 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.6822 -3.8163 -0.0015 11 6 0.3417 -4.0920 -0.6789 12 6 -0.0898 -2.7931 0.0007 13 6 -0.3872 -5.3571 -0.2000 14 6 -1.2324 -5.7346 -1.4493 15 1 -2.1724 -5.1832 -1.4692 16 7 -1.4705 -7.1790 -1.5083 17 6 -2.4611 -7.6676 -2.2805 18 8 -3.1558 -6.9116 -2.9262 19 6 -2.7056 -9.1534 -2.3417 20 1 -2.5898 -9.5819 -1.3461 21 6 -1.6961 -9.7975 -3.2947 22 6 -2.0668 -9.4545 -4.7154 23 8 -1.1989 -9.2872 -5.5453 24 7 -3.3614 -9.3337 -5.0617 25 6 -4.3353 -9.4271 -4.1410 26 8 -5.4893 -9.5340 -4.5070 27 7 -4.0643 -9.4046 -2.8259 28 6 -0.2922 -5.2766 -2.5935 29 8 0.3448 -4.0831 -2.1029 30 1 -0.4850 0.8401 0.0004 31 1 2.5424 -4.0491 -0.6291 32 1 1.7606 -4.2453 0.9975 33 1 -0.4984 -2.9418 1.0003 34 1 -0.7227 -2.1631 -0.6242 35 1 0.3231 -6.1474 0.0430 36 1 -1.0296 -5.1371 0.6528 37 1 -0.9151 -7.7835 -0.9917 38 1 -0.6974 -9.4188 -3.0776 39 1 -1.7122 -10.8797 -3.1653 40 1 -3.5951 -9.1773 -5.9901 41 1 -4.7787 -9.5574 -2.1878 42 1 -0.8691 -5.0555 -3.4915 43 1 0.4528 -6.0447 -2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053941933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:44 Heat of formation + Delta-G solvation = -101.401347 kcal Electronic energy + Delta-G solvation = -29728.617256 eV Core-core repulsion = 25389.195945 eV Total energy + Delta-G solvation = -4339.421310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.89689 -41.57954 -40.42596 -39.96378 -37.98060 -36.92336 -35.76692 -35.34798 -34.19186 -32.44655 -31.34667 -29.87105 -27.44651 -26.79345 -26.51911 -24.58557 -24.00294 -23.00101 -22.09617 -20.93252 -20.56613 -19.34107 -19.14648 -18.72605 -18.25913 -17.59453 -17.50431 -17.07989 -16.96990 -16.40971 -16.38791 -16.13682 -15.86807 -15.63222 -15.40417 -15.30834 -14.89174 -14.71930 -14.66917 -14.36313 -13.59113 -13.49445 -13.40015 -13.32670 -13.04485 -12.85182 -12.75789 -12.55828 -12.21740 -11.95474 -11.76396 -11.66265 -11.55926 -11.39783 -11.37743 -11.33197 -10.95423 -10.35869 -10.30283 -10.11807 -8.92720 -7.91315 -5.23593 0.62190 1.31104 1.42753 1.45363 1.50576 1.55138 1.76431 2.15523 2.26491 2.46413 2.83205 3.26292 3.28232 3.32801 3.41077 3.56606 3.61226 3.68460 3.76633 4.07102 4.12127 4.19607 4.24987 4.53636 4.64882 4.67449 4.77194 4.84585 4.87808 4.90082 4.92362 5.00845 5.16399 5.18686 5.28295 5.37634 5.50450 5.76485 5.93132 6.16933 6.32803 6.42819 6.47845 6.89935 7.08707 7.17165 7.59853 8.59998 9.26756 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002290 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.956516 B =12222.567257 C =12303.460542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.643 5.643 10 C 0.115 3.885 11 C 0.074 3.926 12 C 0.144 3.856 13 C -0.120 4.120 14 C 0.126 3.874 15 H 0.079 0.921 16 N -0.686 5.686 17 C 0.481 3.519 18 O -0.573 6.573 19 C 0.133 3.867 20 H 0.207 0.793 21 C -0.143 4.143 22 C 0.514 3.486 23 O -0.538 6.538 24 N -0.676 5.676 25 C 0.722 3.278 26 O -0.599 6.599 27 N -0.693 5.693 28 C 0.038 3.962 29 O -0.376 6.376 30 H 0.246 0.754 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.026 0.974 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.430 0.570 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.423 0.577 41 H 0.438 0.562 42 H 0.062 0.938 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -30.325 1.547 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.266 4.266 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.215 1.215 7 C -0.352 4.352 8 H 0.103 0.897 9 N -0.369 5.369 10 C -0.010 4.010 11 C 0.033 3.967 12 C 0.018 3.982 13 C -0.158 4.158 14 C 0.020 3.980 15 H 0.097 0.903 16 N -0.341 5.341 17 C 0.266 3.734 18 O -0.451 6.451 19 C 0.025 3.975 20 H 0.224 0.776 21 C -0.182 4.182 22 C 0.304 3.696 23 O -0.413 6.413 24 N -0.344 5.344 25 C 0.423 3.577 26 O -0.476 6.476 27 N -0.352 5.352 28 C -0.040 4.040 29 O -0.295 6.295 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.270 0.730 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.263 0.737 41 H 0.280 0.720 42 H 0.080 0.920 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.929 -29.258 0.429 29.524 hybrid contribution -0.177 1.664 -0.380 1.716 sum -4.106 -27.594 0.049 27.898 Atomic orbital electron populations 1.70044 1.06551 1.25375 1.58466 1.25684 0.96628 1.01052 1.03260 0.84971 0.78275 0.79217 0.76659 1.18642 1.22366 1.21540 1.19355 0.90688 0.82924 1.42280 0.89684 1.45792 1.03933 1.00903 1.86223 1.22920 0.95836 0.83935 0.98308 1.23059 0.97247 0.95326 0.81050 1.22449 0.87962 0.91530 0.96274 1.23058 0.99101 0.96389 0.97260 1.22336 0.98419 0.82577 0.94688 0.90284 1.45550 1.34536 1.06535 1.47504 1.21999 0.79893 0.92691 0.78833 1.90829 1.48602 1.61166 1.44477 1.21458 0.81898 0.89696 1.04478 0.77589 1.22504 1.02106 1.07848 0.85763 1.21808 0.80956 0.73676 0.93153 1.90820 1.48564 1.47544 1.54325 1.44303 1.07535 1.69124 1.13399 1.15734 0.83645 0.75949 0.82391 1.91021 1.20122 1.56410 1.80067 1.44718 1.12190 1.73983 1.04279 1.23914 0.95258 0.87593 0.97245 1.88460 1.79207 1.42010 1.19781 0.94475 0.93518 0.90277 0.93868 0.95583 0.85153 0.87713 0.72980 0.82874 0.80647 0.73684 0.71982 0.91987 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.37 11.51 21.65 0.25 -60.12 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.22 -13.08 10.74 84.03 0.90 -12.18 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.64 -33.91 3.79 -738.57 -2.80 -36.71 16 10 C 0.11 4.39 8.20 83.39 0.68 5.07 16 11 C 0.07 2.63 1.75 -10.73 -0.02 2.61 16 12 C 0.14 6.89 6.87 83.42 0.57 7.46 16 13 C -0.12 -2.37 6.03 31.67 0.19 -2.18 16 14 C 0.13 2.64 3.37 46.54 0.16 2.80 16 15 H 0.08 2.18 7.74 -2.39 -0.02 2.16 16 16 N -0.69 -6.48 5.24 -435.22 -2.28 -8.77 16 17 C 0.48 6.28 6.71 87.66 0.59 6.87 16 18 O -0.57 -15.10 15.90 -3.05 -0.05 -15.15 16 19 C 0.13 0.27 3.63 44.28 0.16 0.43 16 20 H 0.21 -2.23 8.14 -2.39 -0.02 -2.25 16 21 C -0.14 -0.23 5.71 29.89 0.17 -0.06 16 22 C 0.51 7.70 7.44 87.72 0.65 8.35 16 23 O -0.54 -12.58 17.93 -2.90 -0.05 -12.63 16 24 N -0.68 -11.64 5.18 -441.66 -2.29 -13.93 16 25 C 0.72 13.06 7.98 179.34 1.43 14.49 16 26 O -0.60 -15.93 17.97 -3.83 -0.07 -16.00 16 27 N -0.69 -5.96 4.91 -462.63 -2.27 -8.23 16 28 C 0.04 1.05 7.49 72.67 0.54 1.60 16 29 O -0.38 -15.02 11.17 -148.98 -1.66 -16.69 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 33 H 0.04 1.97 7.95 -2.39 -0.02 1.95 16 34 H 0.03 1.49 7.15 -2.39 -0.02 1.47 16 35 H 0.13 1.40 7.96 -2.39 -0.02 1.38 16 36 H 0.10 1.91 7.82 -2.39 -0.02 1.90 16 37 H 0.43 -0.41 8.51 -92.71 -0.79 -1.20 16 38 H 0.15 -0.27 8.07 -2.39 -0.02 -0.28 16 39 H 0.18 -1.12 8.14 -2.39 -0.02 -1.14 16 40 H 0.42 7.60 8.86 -92.71 -0.82 6.78 16 41 H 0.44 2.19 8.90 -92.71 -0.83 1.36 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -102.02 363.84 -4.02 -106.04 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -1.34 Total: 1.29 kcal Atomic # 6 Polarization: 24.84 SS G_CDS: 6.50 Total: 31.35 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -9.39 Total: -127.74 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -1.83 Total: -60.46 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -102.02 -4.02 -106.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.638 kcal (2) G-P(sol) polarization free energy of solvation -102.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds