Wall clock time and date at job start Tue Mar 31 2020 20:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99926 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99938 * 3 2 1 5 5 H 1.48501 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47016 * 120.00124 * 3 2 1 7 7 C 1.38809 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99982 * 189.11156 * 7 2 1 9 9 N 1.36939 * 120.00248 * 9.11270 * 7 2 1 10 10 C 1.48104 * 127.84523 * 195.67795 * 9 7 2 11 11 C 1.55238 * 104.73252 * 219.98347 * 10 9 7 12 12 H 1.08993 * 113.25217 * 98.66067 * 11 10 9 13 13 C 1.55135 * 104.34235 * 335.73936 * 11 10 9 14 14 H 1.09005 * 112.93301 * 123.38556 * 13 11 10 15 15 C 1.48107 * 127.84629 * 15.65358 * 9 7 2 16 16 O 1.45595 * 103.79467 * 245.60721 * 13 11 10 17 17 C 1.33701 * 109.66531 * 359.81352 * 16 13 11 18 18 O 1.21515 * 123.04251 * 179.97438 * 17 16 13 19 19 N 1.33925 * 113.90596 * 359.97438 * 17 16 13 20 20 C 1.46500 * 125.46950 * 179.97438 * 19 17 16 21 21 H 1.09003 * 110.64252 * 179.32441 * 20 19 17 22 22 C 1.55154 * 110.87036 * 302.57423 * 20 19 17 23 23 C 1.54911 * 101.58153 * 153.93416 * 22 20 19 24 24 N 1.47418 * 104.83296 * 322.98678 * 23 22 20 25 25 C 1.34780 * 125.65045 * 204.09328 * 24 23 22 26 26 O 1.21345 * 119.99980 * 180.02562 * 25 24 23 27 27 C 1.49446 * 119.99655 * 0.04094 * 25 24 23 28 28 N 1.34780 * 119.99655 * 180.02562 * 27 25 24 29 29 O 1.21347 * 120.00223 * 0.02562 * 27 25 24 30 30 C 1.47025 * 108.70279 * 24.13035 * 24 23 22 31 31 H 0.97003 * 120.00025 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.39073 * 338.60175 * 10 9 7 33 33 H 1.09004 * 110.39109 * 100.86461 * 10 9 7 34 34 H 1.09006 * 110.38367 * 21.42647 * 15 9 7 35 35 H 1.09000 * 110.38541 * 259.05212 * 15 9 7 36 36 H 1.09004 * 111.00332 * 272.00620 * 22 20 19 37 37 H 1.09004 * 111.00702 * 35.85614 * 22 20 19 38 38 H 1.09002 * 110.36584 * 204.14717 * 23 22 20 39 39 H 1.08999 * 110.36637 * 81.83390 * 23 22 20 40 40 H 0.97001 * 120.00117 * 359.97438 * 28 27 25 41 41 H 0.96998 * 119.99658 * 180.02562 * 28 27 25 42 42 H 1.08995 * 109.88537 * 239.52210 * 30 24 23 43 43 H 1.09004 * 110.01220 * 118.43138 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1476 9 7 1.3384 -2.3805 -0.1889 10 6 1.8183 -3.7542 0.0871 11 6 1.2938 -4.6021 -1.1027 12 1 2.0442 -4.7704 -1.8751 13 6 0.0641 -3.8131 -1.6243 14 1 0.1429 -3.5530 -2.6799 15 6 -0.0332 -2.5706 -0.7144 16 8 -1.0586 -4.6982 -1.3489 17 6 -0.6159 -5.8207 -0.7731 18 8 -1.3513 -6.7288 -0.4395 19 7 0.7113 -5.8536 -0.5974 20 6 1.4618 -6.9570 0.0072 21 1 2.5289 -6.7348 0.0193 22 6 0.9469 -7.2559 1.4400 23 6 1.3239 -8.7498 1.6006 24 7 1.0955 -9.3418 0.2700 25 6 0.8447 -10.6425 0.0214 26 8 0.6722 -11.0200 -1.1188 27 6 0.7787 -11.6197 1.1502 28 7 0.5284 -12.9205 0.9016 29 8 0.9505 -11.2420 2.2906 30 6 1.1876 -8.2785 -0.7412 31 1 -0.4850 0.8401 0.0004 32 1 2.9078 -3.7775 0.1149 33 1 1.4074 -4.1180 1.0289 34 1 -0.3423 -1.6998 -1.2925 35 1 -0.7311 -2.7522 0.1029 36 1 1.4637 -6.6411 2.1770 37 1 -0.1322 -7.1160 1.5046 38 1 0.6824 -9.2253 2.3426 39 1 2.3715 -8.8482 1.8850 40 1 0.3907 -13.2223 -0.0099 41 1 0.4852 -13.5547 1.6343 42 1 0.2484 -8.2060 -1.2895 43 1 2.0042 -8.4899 -1.4316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070917878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:20 Heat of formation + Delta-G solvation = -81.177258 kcal Electronic energy + Delta-G solvation = -30320.692567 eV Core-core repulsion = 25982.148239 eV Total energy + Delta-G solvation = -4338.544328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65299 -40.84491 -38.92512 -37.93099 -37.29145 -35.75712 -34.73157 -33.93261 -32.15861 -31.03212 -29.25138 -28.60648 -27.28246 -25.85424 -24.78650 -23.13728 -22.54093 -21.30766 -20.88671 -20.21917 -19.80549 -18.35262 -17.54958 -17.38019 -17.09423 -16.58391 -16.34377 -16.10566 -15.81074 -15.48670 -14.99135 -14.82579 -14.61251 -14.13498 -14.04381 -13.75723 -13.57247 -13.35693 -13.27953 -13.04406 -12.57048 -12.36244 -12.31466 -11.96141 -11.70419 -11.46359 -11.22041 -11.08910 -11.02782 -10.91396 -10.66007 -10.33714 -10.24832 -10.13423 -10.05065 -9.88503 -9.85344 -8.98025 -8.95231 -8.72974 -7.15861 -5.99306 -3.38401 1.16149 2.04102 2.65658 2.95748 3.00853 3.28055 3.33138 3.34914 3.41154 3.76861 4.16385 4.25763 4.31080 4.42293 4.51953 4.72128 4.94984 5.07277 5.09122 5.19867 5.23792 5.39051 5.43657 5.51157 5.65123 5.67485 5.70233 5.83244 5.88593 5.96809 6.14143 6.19781 6.20981 6.40782 6.59735 6.66937 6.98041 7.01362 7.22028 7.43180 7.48346 7.69490 7.72458 7.94924 8.30425 8.86690 9.50295 10.20739 11.14071 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.002603 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.586474 B =10756.191375 C =11186.909050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.001 3.999 3 Si 0.917 3.083 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.587 5.587 10 C 0.120 3.880 11 C 0.081 3.919 12 H 0.108 0.892 13 C 0.046 3.954 14 H 0.122 0.878 15 C 0.150 3.850 16 O -0.324 6.324 17 C 0.646 3.354 18 O -0.533 6.533 19 N -0.618 5.618 20 C 0.171 3.829 21 H 0.116 0.884 22 C -0.152 4.152 23 C 0.100 3.900 24 N -0.579 5.579 25 C 0.519 3.481 26 O -0.524 6.524 27 C 0.519 3.481 28 N -0.823 5.823 29 O -0.516 6.516 30 C 0.094 3.906 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.089 0.911 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -19.425 -0.344 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.198 4.198 3 Si 0.746 3.254 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.311 5.311 10 C -0.008 4.008 11 C -0.024 4.024 12 H 0.126 0.874 13 C -0.011 4.011 14 H 0.139 0.861 15 C 0.023 3.977 16 O -0.233 6.233 17 C 0.401 3.599 18 O -0.420 6.420 19 N -0.365 5.365 20 C 0.068 3.932 21 H 0.134 0.866 22 C -0.191 4.191 23 C -0.022 4.022 24 N -0.313 5.313 25 C 0.301 3.699 26 O -0.400 6.400 27 C 0.298 3.702 28 N -0.389 5.389 29 O -0.391 6.391 30 C -0.029 4.029 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.243 0.757 42 H 0.107 0.893 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.503 -19.372 -0.165 19.889 hybrid contribution 0.412 0.475 -0.146 0.646 sum 4.915 -18.897 -0.311 19.528 Atomic orbital electron populations 1.69859 1.05163 1.26150 1.54416 1.24970 0.95672 0.98285 1.00839 0.86138 0.78563 0.82524 0.78136 1.20832 1.21420 1.20822 1.18924 0.90826 0.81731 1.45100 0.90085 1.44840 1.13148 0.99974 1.73177 1.22161 0.98257 0.86791 0.93556 1.23847 0.96983 0.82660 0.98948 0.87377 1.25485 0.80790 0.92158 1.02689 0.86057 1.21905 0.87960 0.93041 0.94749 1.87225 1.34866 1.27851 1.73326 1.18574 0.82011 0.82236 0.77076 1.90989 1.59546 1.36037 1.55420 1.47949 1.06564 1.18552 1.63410 1.21692 0.96099 0.83420 0.91988 0.86624 1.23356 1.04467 0.95109 0.96134 1.22692 1.02476 0.92660 0.84390 1.48058 1.67079 1.06009 1.10163 1.19638 0.79049 0.82232 0.88972 1.90773 1.49043 1.77933 1.22301 1.20010 0.77292 0.83991 0.88936 1.43504 1.72972 1.08260 1.14209 1.90781 1.47732 1.78136 1.22456 1.22422 1.03831 0.85525 0.91138 0.93057 0.92124 0.94532 0.87805 0.94184 0.88646 0.88615 0.87784 0.90332 0.75572 0.75668 0.89268 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.93 10.86 55.49 0.60 -24.32 16 2 C 0.00 0.02 5.40 -17.43 -0.09 -0.08 16 3 Si 0.92 20.34 29.56 -169.99 -5.03 15.31 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.24 -5.95 10.35 -15.06 -0.16 -6.10 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 N -0.59 -13.21 3.38 -168.44 -0.57 -13.78 16 10 C 0.12 2.10 6.89 -1.97 -0.01 2.08 16 11 C 0.08 1.20 4.53 -65.35 -0.30 0.90 16 12 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.05 0.79 4.94 -24.92 -0.12 0.67 16 14 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 15 C 0.15 3.28 5.64 -2.47 -0.01 3.26 16 16 O -0.32 -6.17 10.64 -37.66 -0.40 -6.57 16 17 C 0.65 11.75 7.98 53.68 0.43 12.18 16 18 O -0.53 -10.88 15.05 -19.13 -0.29 -11.17 16 19 N -0.62 -8.98 2.54 -159.80 -0.41 -9.39 16 20 C 0.17 1.98 3.56 -66.10 -0.24 1.75 16 21 H 0.12 1.02 8.13 -51.93 -0.42 0.59 16 22 C -0.15 -1.75 6.58 -24.58 -0.16 -1.92 16 23 C 0.10 1.07 6.06 -2.53 -0.02 1.05 16 24 N -0.58 -7.10 3.33 -171.03 -0.57 -7.67 16 25 C 0.52 6.53 7.91 -11.59 -0.09 6.44 16 26 O -0.52 -7.57 16.80 5.50 0.09 -7.48 16 27 C 0.52 5.48 8.13 -11.59 -0.09 5.39 16 28 N -0.82 -5.42 8.87 30.90 0.27 -5.15 16 29 O -0.52 -6.38 14.61 5.50 0.08 -6.30 16 30 C 0.09 1.16 6.35 -3.06 -0.02 1.14 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.67 8.00 -51.93 -0.42 0.26 16 34 H 0.10 2.52 6.51 -51.93 -0.34 2.18 16 35 H 0.04 0.98 8.00 -51.93 -0.42 0.56 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.41 6.53 -51.93 -0.34 1.07 16 38 H 0.10 1.21 6.16 -51.93 -0.32 0.89 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.41 2.24 8.30 -40.82 -0.34 1.90 16 41 H 0.41 1.76 8.93 -40.82 -0.36 1.40 16 42 H 0.09 1.37 6.45 -51.93 -0.34 1.04 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -32.89 353.31 -7.14 -40.03 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.37 Total: 4.39 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: -0.89 Total: 26.77 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.67 Total: -60.31 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.52 Total: -31.52 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.89 -7.14 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070917878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.144 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds