Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99926 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99938 * 3 2 1 5 5 H 1.48501 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47016 * 120.00124 * 3 2 1 7 7 C 1.38809 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99982 * 189.11156 * 7 2 1 9 9 N 1.36939 * 120.00248 * 9.11270 * 7 2 1 10 10 C 1.48104 * 127.84523 * 195.67795 * 9 7 2 11 11 C 1.55238 * 104.73252 * 219.98347 * 10 9 7 12 12 H 1.08993 * 113.25217 * 98.66067 * 11 10 9 13 13 C 1.55135 * 104.34235 * 335.73936 * 11 10 9 14 14 H 1.09005 * 112.93301 * 123.38556 * 13 11 10 15 15 C 1.48107 * 127.84629 * 15.65358 * 9 7 2 16 16 O 1.45595 * 103.79467 * 245.60721 * 13 11 10 17 17 C 1.33701 * 109.66531 * 359.81352 * 16 13 11 18 18 O 1.21515 * 123.04251 * 179.97438 * 17 16 13 19 19 N 1.33925 * 113.90596 * 359.97438 * 17 16 13 20 20 C 1.46500 * 125.46950 * 179.97438 * 19 17 16 21 21 H 1.09003 * 110.64252 * 179.32441 * 20 19 17 22 22 C 1.55154 * 110.87036 * 302.57423 * 20 19 17 23 23 C 1.54911 * 101.58153 * 153.93416 * 22 20 19 24 24 N 1.47418 * 104.83296 * 322.98678 * 23 22 20 25 25 C 1.34780 * 125.65045 * 204.09328 * 24 23 22 26 26 O 1.21345 * 119.99980 * 180.02562 * 25 24 23 27 27 C 1.49446 * 119.99655 * 0.04094 * 25 24 23 28 28 N 1.34780 * 119.99655 * 180.02562 * 27 25 24 29 29 O 1.21347 * 120.00223 * 0.02562 * 27 25 24 30 30 C 1.47025 * 108.70279 * 24.13035 * 24 23 22 31 31 H 0.97003 * 120.00025 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.39073 * 338.60175 * 10 9 7 33 33 H 1.09004 * 110.39109 * 100.86461 * 10 9 7 34 34 H 1.09006 * 110.38367 * 21.42647 * 15 9 7 35 35 H 1.09000 * 110.38541 * 259.05212 * 15 9 7 36 36 H 1.09004 * 111.00332 * 272.00620 * 22 20 19 37 37 H 1.09004 * 111.00702 * 35.85614 * 22 20 19 38 38 H 1.09002 * 110.36584 * 204.14717 * 23 22 20 39 39 H 1.08999 * 110.36637 * 81.83390 * 23 22 20 40 40 H 0.97001 * 120.00117 * 359.97438 * 28 27 25 41 41 H 0.96998 * 119.99658 * 180.02562 * 28 27 25 42 42 H 1.08995 * 109.88537 * 239.52210 * 30 24 23 43 43 H 1.09004 * 110.01220 * 118.43138 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1476 9 7 1.3384 -2.3805 -0.1889 10 6 1.8183 -3.7542 0.0871 11 6 1.2938 -4.6021 -1.1027 12 1 2.0442 -4.7704 -1.8751 13 6 0.0641 -3.8131 -1.6243 14 1 0.1429 -3.5530 -2.6799 15 6 -0.0332 -2.5706 -0.7144 16 8 -1.0586 -4.6982 -1.3489 17 6 -0.6159 -5.8207 -0.7731 18 8 -1.3513 -6.7288 -0.4395 19 7 0.7113 -5.8536 -0.5974 20 6 1.4618 -6.9570 0.0072 21 1 2.5289 -6.7348 0.0193 22 6 0.9469 -7.2559 1.4400 23 6 1.3239 -8.7498 1.6006 24 7 1.0955 -9.3418 0.2700 25 6 0.8447 -10.6425 0.0214 26 8 0.6722 -11.0200 -1.1188 27 6 0.7787 -11.6197 1.1502 28 7 0.5284 -12.9205 0.9016 29 8 0.9505 -11.2420 2.2906 30 6 1.1876 -8.2785 -0.7412 31 1 -0.4850 0.8401 0.0004 32 1 2.9078 -3.7775 0.1149 33 1 1.4074 -4.1180 1.0289 34 1 -0.3423 -1.6998 -1.2925 35 1 -0.7311 -2.7522 0.1029 36 1 1.4637 -6.6411 2.1770 37 1 -0.1322 -7.1160 1.5046 38 1 0.6824 -9.2253 2.3426 39 1 2.3715 -8.8482 1.8850 40 1 0.3907 -13.2223 -0.0099 41 1 0.4852 -13.5547 1.6343 42 1 0.2484 -8.2060 -1.2895 43 1 2.0042 -8.4899 -1.4316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070917878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = -107.559668 kcal Electronic energy + Delta-G solvation = -30321.836594 eV Core-core repulsion = 25982.148239 eV Total energy + Delta-G solvation = -4339.688355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.98666 -41.78401 -39.85906 -39.07819 -38.64831 -37.26228 -36.02744 -34.71016 -33.86040 -32.14174 -30.46136 -30.02448 -28.73156 -26.87401 -26.45163 -24.12500 -23.56587 -22.83329 -22.44422 -21.17600 -20.90965 -19.21350 -18.90952 -18.68237 -18.21749 -17.57930 -17.49270 -17.40087 -17.02937 -16.72881 -16.48003 -15.99985 -15.78937 -15.58831 -15.18020 -14.95312 -14.91265 -14.53033 -14.43684 -14.25461 -13.88534 -13.63661 -13.59053 -13.12872 -12.90399 -12.81864 -12.67342 -12.50952 -12.34679 -12.27361 -12.19629 -12.08187 -11.87990 -11.50755 -11.36999 -10.92249 -10.80794 -10.77260 -10.01081 -9.90736 -8.99631 -7.92108 -5.31916 0.27686 1.11219 1.46951 1.54018 1.55107 1.61395 1.63585 2.06874 2.38717 2.50165 2.60930 3.14355 3.28471 3.31184 3.39695 3.53469 3.62011 3.73602 3.89475 4.05152 4.05949 4.16837 4.23930 4.40916 4.47464 4.56928 4.73287 4.82903 4.85970 4.88062 5.00174 5.02012 5.14983 5.20934 5.41805 5.46962 5.56849 5.59323 5.90634 6.07991 6.13136 6.34393 6.59900 6.92452 6.95431 6.98269 7.64254 8.36971 9.20956 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.002603 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.586474 B =10756.191375 C =11186.909050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.120 3.880 11 C 0.101 3.899 12 H 0.157 0.843 13 C 0.052 3.948 14 H 0.150 0.850 15 C 0.156 3.844 16 O -0.345 6.345 17 C 0.639 3.361 18 O -0.564 6.564 19 N -0.603 5.603 20 C 0.169 3.831 21 H 0.162 0.838 22 C -0.150 4.150 23 C 0.107 3.893 24 N -0.584 5.584 25 C 0.512 3.488 26 O -0.549 6.549 27 C 0.520 3.480 28 N -0.799 5.799 29 O -0.537 6.537 30 C 0.096 3.904 31 H 0.250 0.750 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.073 0.927 35 H -0.001 1.001 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.422 0.578 41 H 0.425 0.575 42 H 0.054 0.946 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 -20.841 -0.684 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.114 0.886 9 N -0.332 5.332 10 C -0.006 4.006 11 C -0.004 4.004 12 H 0.174 0.826 13 C -0.005 4.005 14 H 0.168 0.832 15 C 0.030 3.970 16 O -0.255 6.255 17 C 0.394 3.606 18 O -0.452 6.452 19 N -0.349 5.349 20 C 0.068 3.932 21 H 0.179 0.821 22 C -0.188 4.188 23 C -0.015 4.015 24 N -0.317 5.317 25 C 0.295 3.705 26 O -0.427 6.427 27 C 0.298 3.702 28 N -0.366 5.366 29 O -0.414 6.414 30 C -0.027 4.027 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.017 0.983 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.254 0.746 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.829 -20.854 -0.498 22.281 hybrid contribution -0.658 0.831 0.007 1.060 sum 7.171 -20.023 -0.491 21.274 Atomic orbital electron populations 1.70068 1.06744 1.26028 1.56846 1.25770 0.96298 1.01525 1.01803 0.85142 0.77105 0.78465 0.78525 1.19675 1.22900 1.20147 1.19383 0.91644 0.82606 1.42805 0.88583 1.45058 1.13022 1.01516 1.73620 1.22327 0.99948 0.84277 0.94073 1.23858 0.96281 0.81633 0.98607 0.82565 1.25423 0.81678 0.90302 1.03058 0.83231 1.21566 0.87447 0.94130 0.93891 1.87199 1.36222 1.28477 1.73580 1.18762 0.83116 0.81674 0.77031 1.90963 1.60620 1.37032 1.56625 1.48006 1.05196 1.19050 1.62610 1.22129 0.97794 0.82111 0.91208 0.82062 1.23305 1.02302 0.96277 0.96947 1.22730 1.03835 0.91499 0.83397 1.48210 1.66640 1.06062 1.10768 1.20071 0.78507 0.82693 0.89248 1.90753 1.50224 1.78443 1.23320 1.19744 0.77735 0.84717 0.87980 1.43370 1.70897 1.07097 1.15287 1.90778 1.49322 1.78596 1.22752 1.22384 1.02838 0.86053 0.91425 0.94085 0.89111 0.95507 0.90901 0.98295 0.86631 0.92427 0.88945 0.87446 0.74629 0.74022 0.92787 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.79 10.86 21.65 0.24 -53.55 16 2 C -0.06 -3.11 5.40 84.86 0.46 -2.65 16 3 Si 0.98 41.80 29.56 68.60 2.03 43.83 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.24 -11.52 10.35 84.03 0.87 -10.65 16 8 H 0.10 4.31 7.85 -2.91 -0.02 4.29 16 9 N -0.61 -26.77 3.38 -686.81 -2.32 -29.09 16 10 C 0.12 3.83 6.89 86.84 0.60 4.43 16 11 C 0.10 2.63 4.53 46.40 0.21 2.84 16 12 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 13 C 0.05 1.74 4.94 31.77 0.16 1.89 16 14 H 0.15 4.18 8.14 -2.38 -0.02 4.16 16 15 C 0.16 7.00 5.64 86.52 0.49 7.49 16 16 O -0.35 -13.29 10.64 -46.67 -0.50 -13.79 16 17 C 0.64 23.21 7.98 129.92 1.04 24.24 16 18 O -0.56 -23.66 15.05 19.64 0.30 -23.36 16 19 N -0.60 -16.14 2.54 -891.33 -2.26 -18.40 16 20 C 0.17 3.37 3.56 46.18 0.16 3.54 16 21 H 0.16 1.86 8.13 -2.39 -0.02 1.84 16 22 C -0.15 -3.19 6.58 31.99 0.21 -2.98 16 23 C 0.11 2.07 6.06 86.86 0.53 2.60 16 24 N -0.58 -13.42 3.33 -813.37 -2.71 -16.13 16 25 C 0.51 12.35 7.91 87.27 0.69 13.04 16 26 O -0.55 -15.46 16.80 -3.23 -0.05 -15.51 16 27 C 0.52 10.31 8.13 87.27 0.71 11.02 16 28 N -0.80 -9.14 8.87 -174.50 -1.55 -10.69 16 29 O -0.54 -12.59 14.61 -3.24 -0.05 -12.64 16 30 C 0.10 2.18 6.35 86.73 0.55 2.73 16 31 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 34 H 0.07 3.70 6.51 -2.38 -0.02 3.68 16 35 H 0.00 -0.05 8.00 -2.39 -0.02 -0.07 16 36 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.71 6.53 -2.39 -0.02 1.70 16 38 H 0.09 2.06 6.16 -2.39 -0.01 2.05 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 3.84 8.30 -92.71 -0.77 3.07 16 41 H 0.42 2.77 8.93 -92.71 -0.83 1.94 16 42 H 0.05 1.64 6.45 -2.39 -0.02 1.62 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.88 353.31 -0.71 -76.59 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.51 Total: 15.22 kcal Atomic # 6 Polarization: 50.86 SS G_CDS: 6.67 Total: 57.53 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -8.60 Total: -127.87 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -0.30 Total: -65.30 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.88 -0.71 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070917878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.972 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds