Wall clock time and date at job start Tue Mar 31 2020 20:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99762 * 2 1 4 4 H 1.48493 * 109.46837 * 239.99800 * 3 2 1 5 5 H 1.48500 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99647 * 3 2 1 7 7 C 1.38807 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00361 * 0.02562 * 7 2 1 10 10 C 1.47066 * 125.64058 * 359.97438 * 9 7 2 11 11 C 1.54897 * 107.20314 * 180.24060 * 10 9 7 12 12 H 1.08992 * 112.56932 * 143.26927 * 11 10 9 13 13 O 1.42785 * 107.17432 * 266.67904 * 11 10 9 14 14 C 1.42619 * 115.83732 * 166.92445 * 13 11 10 15 15 C 1.53569 * 108.29061 * 295.38982 * 14 13 11 16 16 N 1.47049 * 107.23649 * 55.94429 * 15 14 13 17 17 C 1.34777 * 120.03900 * 130.33346 * 16 15 14 18 18 O 1.21278 * 119.99868 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00117 * 0.02973 * 17 16 15 20 20 N 1.46500 * 109.47498 * 179.97438 * 19 17 16 21 21 C 1.47314 * 126.69092 * 89.99270 * 20 19 17 22 22 C 1.51583 * 103.58988 * 179.97438 * 21 20 19 23 23 O 1.21242 * 127.15609 * 180.02562 * 22 21 20 24 24 N 1.34764 * 105.68640 * 0.02562 * 22 21 20 25 25 C 1.33789 * 111.64596 * 359.76137 * 24 22 21 26 26 O 1.21541 * 123.77380 * 180.24737 * 25 24 22 27 27 C 1.45526 * 119.92130 * 310.36376 * 16 15 14 28 28 H 1.08999 * 110.29985 * 165.56881 * 27 16 15 29 29 C 1.47605 * 125.64526 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00693 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.89303 * 60.84555 * 10 9 7 32 32 H 1.08998 * 109.89555 * 299.64171 * 10 9 7 33 33 H 1.08997 * 109.70239 * 55.09142 * 14 13 11 34 34 H 1.09003 * 109.69936 * 175.69216 * 14 13 11 35 35 H 1.08994 * 109.90838 * 296.51627 * 15 14 13 36 36 H 1.08998 * 109.96934 * 175.40752 * 15 14 13 37 37 H 1.09004 * 109.47182 * 299.99752 * 19 17 16 38 38 H 1.08992 * 109.47474 * 59.99418 * 19 17 16 39 39 H 1.09002 * 110.59812 * 298.49577 * 21 20 19 40 40 H 1.09003 * 110.59896 * 61.29009 * 21 20 19 41 41 H 0.97000 * 124.17474 * 179.97438 * 24 22 21 42 42 H 1.09001 * 110.42246 * 37.70962 * 29 9 7 43 43 H 1.09002 * 110.52869 * 275.28773 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1379 -2.5327 0.0005 11 6 -0.4482 -4.0503 0.0068 12 1 -1.3226 -4.2960 0.6093 13 8 -0.6096 -4.4532 -1.3535 14 6 -0.6143 -5.8599 -1.5888 15 6 0.7687 -6.4151 -1.2181 16 7 1.0331 -6.0307 0.1764 17 6 1.4463 -6.9564 1.0646 18 8 1.6638 -6.6386 2.2146 19 6 1.6382 -8.3861 0.6288 20 7 2.0884 -9.1881 1.7691 21 6 1.2352 -9.9054 2.7323 22 6 2.2294 -10.5507 3.6772 23 8 1.9807 -11.2474 4.6378 24 7 3.4472 -10.1889 3.2274 25 6 3.3616 -9.4170 2.1380 26 8 4.3264 -8.9703 1.5490 27 6 0.8476 -4.6498 0.5963 28 1 0.8351 -4.5838 1.6843 29 6 1.9344 -3.7327 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5561 -2.0723 -0.8946 32 1 -0.5569 -2.0648 0.8913 33 1 -1.3778 -6.3331 -0.9713 34 1 -0.8189 -6.0557 -2.6414 35 1 1.5282 -5.9861 -1.8716 36 1 0.7706 -7.5012 -1.3103 37 1 0.6936 -8.7822 0.2559 38 1 2.3869 -8.4275 -0.1622 39 1 0.5929 -9.2075 3.2695 40 1 0.6372 -10.6626 2.2252 41 1 4.2826 -10.4577 3.6406 42 1 2.8275 -3.7459 0.6253 43 1 2.1778 -4.0421 -1.0159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083225647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:25 Heat of formation + Delta-G solvation = -59.962105 kcal Electronic energy + Delta-G solvation = -30323.054047 eV Core-core repulsion = 25985.429677 eV Total energy + Delta-G solvation = -4337.624370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.58237 -40.57686 -39.03253 -38.41921 -36.47144 -35.84929 -34.84156 -34.80116 -32.31870 -30.07206 -29.86194 -27.98179 -27.67551 -26.72222 -24.43456 -23.40248 -22.75396 -22.21775 -20.57162 -20.34902 -18.80031 -18.52751 -17.98505 -17.17551 -17.06744 -16.90422 -16.53503 -16.11196 -15.81469 -15.22908 -15.14452 -15.07519 -14.54443 -14.51092 -14.44512 -14.29324 -13.91200 -13.54674 -13.43158 -12.95762 -12.80459 -12.40517 -12.19454 -11.81741 -11.38753 -11.34685 -11.15877 -11.02986 -10.77255 -10.71238 -10.66136 -10.60982 -10.34752 -10.19007 -9.94649 -9.78248 -9.69006 -9.24580 -8.67903 -8.38636 -6.88129 -5.74165 -3.07616 1.23940 1.72670 2.42670 2.56889 2.64868 2.95722 3.42055 3.45921 3.47261 3.65573 4.00872 4.17146 4.26887 4.49521 4.56080 4.73133 4.75899 4.78952 4.86339 5.09594 5.14310 5.22243 5.31089 5.47265 5.51999 5.62247 5.65185 5.74496 5.76211 5.84414 5.96406 6.13327 6.45542 6.57605 6.61989 6.74441 6.97024 7.23268 7.30814 7.46590 7.72323 7.74193 7.81143 8.03283 8.20219 9.17735 9.77436 10.41481 11.38312 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002829 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.153998 B = 9896.084690 C =10626.303292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.188 3.812 11 C 0.057 3.943 12 H 0.072 0.928 13 O -0.364 6.364 14 C 0.048 3.952 15 C 0.068 3.932 16 N -0.595 5.595 17 C 0.491 3.509 18 O -0.527 6.527 19 C 0.135 3.865 20 N -0.609 5.609 21 C 0.063 3.937 22 C 0.531 3.469 23 O -0.473 6.473 24 N -0.678 5.678 25 C 0.707 3.293 26 O -0.536 6.536 27 C 0.098 3.902 28 H 0.110 0.890 29 C 0.137 3.863 30 H 0.254 0.746 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.433 0.567 42 H 0.042 0.958 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -23.426 -0.780 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.064 3.936 11 C -0.002 4.002 12 H 0.090 0.910 13 O -0.282 6.282 14 C -0.030 4.030 15 C -0.055 4.055 16 N -0.329 5.329 17 C 0.276 3.724 18 O -0.403 6.403 19 C 0.010 3.990 20 N -0.348 5.348 21 C -0.062 4.062 22 C 0.317 3.683 23 O -0.343 6.343 24 N -0.348 5.348 25 C 0.408 3.592 26 O -0.408 6.408 27 C -0.006 4.006 28 H 0.128 0.872 29 C 0.010 3.990 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.275 0.725 42 H 0.061 0.939 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.879 -22.901 -0.252 22.979 hybrid contribution 0.847 0.574 0.330 1.075 sum -1.032 -22.327 0.078 22.351 Atomic orbital electron populations 1.69888 1.04879 1.25381 1.57019 1.24795 0.95767 0.97706 1.02035 0.86145 0.78423 0.82934 0.77938 1.21135 1.21550 1.21120 1.19008 0.90465 0.82036 1.44026 0.90310 1.44340 1.01254 0.99730 1.87449 1.21387 0.84950 0.84934 1.02376 1.24081 0.94616 0.99381 0.82148 0.91048 1.87977 1.93352 1.20175 1.26711 1.22848 0.94305 0.84163 1.01712 1.22638 0.99728 1.00318 0.82859 1.47678 1.66345 1.09024 1.09859 1.21067 0.77489 0.87740 0.86060 1.90733 1.49823 1.81158 1.18586 1.21222 1.03183 0.87889 0.86711 1.46949 1.05356 1.51977 1.30482 1.22555 0.94715 0.98086 0.90882 1.20761 0.84245 0.78966 0.84349 1.90867 1.82131 1.35437 1.25864 1.44299 1.11895 1.49487 1.29122 1.15745 0.84275 0.78791 0.80369 1.91053 1.38306 1.54404 1.57073 1.22529 0.97809 0.79018 1.01277 0.87209 1.21580 0.94171 0.85947 0.97327 0.93528 0.91761 0.92069 0.93194 0.88003 0.89618 0.89336 0.86272 0.85970 0.85539 0.85635 0.72463 0.93928 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.31 55.49 0.57 -26.27 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.42 3.40 -169.99 -0.58 -16.00 16 10 C 0.19 4.51 5.04 -2.73 -0.01 4.49 16 11 C 0.06 1.04 4.02 -24.96 -0.10 0.94 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 13 O -0.36 -6.20 9.98 -35.23 -0.35 -6.56 16 14 C 0.05 0.52 7.02 37.45 0.26 0.78 16 15 C 0.07 0.66 6.26 -3.45 -0.02 0.64 16 16 N -0.60 -8.03 2.75 -164.45 -0.45 -8.49 16 17 C 0.49 6.39 7.74 -10.99 -0.09 6.31 16 18 O -0.53 -9.15 15.84 5.56 0.09 -9.06 16 19 C 0.14 1.06 4.97 -5.20 -0.03 1.03 16 20 N -0.61 -5.36 2.51 -181.40 -0.45 -5.82 16 21 C 0.06 0.39 7.66 -4.31 -0.03 0.35 16 22 C 0.53 4.42 8.81 -10.56 -0.09 4.33 16 23 O -0.47 -5.20 18.02 5.59 0.10 -5.10 16 24 N -0.68 -5.82 5.70 -15.79 -0.09 -5.91 16 25 C 0.71 7.91 8.68 -88.02 -0.76 7.14 16 26 O -0.54 -8.07 17.71 5.33 0.09 -7.98 16 27 C 0.10 1.76 3.20 -67.06 -0.21 1.55 16 28 H 0.11 2.17 7.07 -51.93 -0.37 1.81 16 29 C 0.14 2.93 6.80 -2.82 -0.02 2.92 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.06 1.73 7.32 -51.93 -0.38 1.35 16 32 H 0.06 1.59 7.43 -51.93 -0.39 1.21 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 36 H 0.09 0.44 5.95 -51.93 -0.31 0.13 16 37 H 0.12 0.40 7.60 -51.93 -0.39 0.01 16 38 H 0.12 0.87 7.88 -51.93 -0.41 0.46 16 39 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.43 2.93 8.96 -40.82 -0.37 2.56 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -38.12 355.17 -7.57 -45.69 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.47 Total: -0.69 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: -1.36 Total: 23.65 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -1.00 Total: -62.47 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.07 Total: -28.69 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.12 -7.57 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083225647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.275 kcal (2) G-P(sol) polarization free energy of solvation -38.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds