Wall clock time and date at job start Tue Mar 31 2020 20:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99762 * 2 1 4 4 H 1.48493 * 109.46837 * 239.99800 * 3 2 1 5 5 H 1.48500 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99647 * 3 2 1 7 7 C 1.38807 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00361 * 0.02562 * 7 2 1 10 10 C 1.47066 * 125.64058 * 359.97438 * 9 7 2 11 11 C 1.54897 * 107.20314 * 180.24060 * 10 9 7 12 12 H 1.08992 * 112.56932 * 143.26927 * 11 10 9 13 13 O 1.42785 * 107.17432 * 266.67904 * 11 10 9 14 14 C 1.42619 * 115.83732 * 166.92445 * 13 11 10 15 15 C 1.53569 * 108.29061 * 295.38982 * 14 13 11 16 16 N 1.47049 * 107.23649 * 55.94429 * 15 14 13 17 17 C 1.34777 * 120.03900 * 130.33346 * 16 15 14 18 18 O 1.21278 * 119.99868 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00117 * 0.02973 * 17 16 15 20 20 N 1.46500 * 109.47498 * 179.97438 * 19 17 16 21 21 C 1.47314 * 126.69092 * 89.99270 * 20 19 17 22 22 C 1.51583 * 103.58988 * 179.97438 * 21 20 19 23 23 O 1.21242 * 127.15609 * 180.02562 * 22 21 20 24 24 N 1.34764 * 105.68640 * 0.02562 * 22 21 20 25 25 C 1.33789 * 111.64596 * 359.76137 * 24 22 21 26 26 O 1.21541 * 123.77380 * 180.24737 * 25 24 22 27 27 C 1.45526 * 119.92130 * 310.36376 * 16 15 14 28 28 H 1.08999 * 110.29985 * 165.56881 * 27 16 15 29 29 C 1.47605 * 125.64526 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00693 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.89303 * 60.84555 * 10 9 7 32 32 H 1.08998 * 109.89555 * 299.64171 * 10 9 7 33 33 H 1.08997 * 109.70239 * 55.09142 * 14 13 11 34 34 H 1.09003 * 109.69936 * 175.69216 * 14 13 11 35 35 H 1.08994 * 109.90838 * 296.51627 * 15 14 13 36 36 H 1.08998 * 109.96934 * 175.40752 * 15 14 13 37 37 H 1.09004 * 109.47182 * 299.99752 * 19 17 16 38 38 H 1.08992 * 109.47474 * 59.99418 * 19 17 16 39 39 H 1.09002 * 110.59812 * 298.49577 * 21 20 19 40 40 H 1.09003 * 110.59896 * 61.29009 * 21 20 19 41 41 H 0.97000 * 124.17474 * 179.97438 * 24 22 21 42 42 H 1.09001 * 110.42246 * 37.70962 * 29 9 7 43 43 H 1.09002 * 110.52869 * 275.28773 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1379 -2.5327 0.0005 11 6 -0.4482 -4.0503 0.0068 12 1 -1.3226 -4.2960 0.6093 13 8 -0.6096 -4.4532 -1.3535 14 6 -0.6143 -5.8599 -1.5888 15 6 0.7687 -6.4151 -1.2181 16 7 1.0331 -6.0307 0.1764 17 6 1.4463 -6.9564 1.0646 18 8 1.6638 -6.6386 2.2146 19 6 1.6382 -8.3861 0.6288 20 7 2.0884 -9.1881 1.7691 21 6 1.2352 -9.9054 2.7323 22 6 2.2294 -10.5507 3.6772 23 8 1.9807 -11.2474 4.6378 24 7 3.4472 -10.1889 3.2274 25 6 3.3616 -9.4170 2.1380 26 8 4.3264 -8.9703 1.5490 27 6 0.8476 -4.6498 0.5963 28 1 0.8351 -4.5838 1.6843 29 6 1.9344 -3.7327 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5561 -2.0723 -0.8946 32 1 -0.5569 -2.0648 0.8913 33 1 -1.3778 -6.3331 -0.9713 34 1 -0.8189 -6.0557 -2.6414 35 1 1.5282 -5.9861 -1.8716 36 1 0.7706 -7.5012 -1.3103 37 1 0.6936 -8.7822 0.2559 38 1 2.3869 -8.4275 -0.1622 39 1 0.5929 -9.2075 3.2695 40 1 0.6372 -10.6626 2.2252 41 1 4.2826 -10.4577 3.6406 42 1 2.8275 -3.7459 0.6253 43 1 2.1778 -4.0421 -1.0159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083225647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:24 Heat of formation + Delta-G solvation = -91.946628 kcal Electronic energy + Delta-G solvation = -30324.441000 eV Core-core repulsion = 25985.429677 eV Total energy + Delta-G solvation = -4339.011323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.29556 -41.74388 -39.95307 -39.52330 -37.46069 -37.31386 -35.99546 -35.54522 -34.19166 -31.50977 -30.75385 -29.22189 -29.04224 -27.80300 -26.24503 -24.42872 -23.50899 -23.08846 -22.24724 -21.59512 -19.88281 -19.27070 -19.06917 -18.83140 -18.04488 -17.72322 -17.60360 -16.96873 -16.89332 -16.81148 -16.22160 -16.17816 -15.90797 -15.56408 -15.34461 -15.14930 -15.13089 -14.82906 -14.47169 -14.27081 -14.01362 -13.75083 -13.42080 -13.18070 -12.99291 -12.74727 -12.67107 -12.49700 -12.19292 -12.12823 -12.10511 -11.82129 -11.51213 -11.49749 -11.43619 -11.20949 -10.98741 -10.78196 -10.06145 -9.59081 -8.95547 -7.89034 -5.25650 0.54766 1.05224 1.44286 1.47259 1.48585 1.54650 1.73842 1.94839 2.11123 2.48011 2.86370 3.04921 3.30282 3.34408 3.49275 3.62491 3.73540 3.88440 4.06957 4.09538 4.19453 4.29865 4.33274 4.34603 4.36598 4.43553 4.56417 4.64966 4.75823 4.85807 4.96223 5.00786 5.02856 5.15556 5.35873 5.39406 5.44490 5.65599 5.90705 6.13065 6.27236 6.33824 6.44900 6.96289 7.03955 7.05861 7.68971 8.32924 9.21331 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002829 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.153998 B = 9896.084690 C =10626.303292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.195 3.805 11 C 0.081 3.919 12 H 0.093 0.907 13 O -0.394 6.394 14 C 0.038 3.962 15 C 0.065 3.935 16 N -0.595 5.595 17 C 0.486 3.514 18 O -0.579 6.579 19 C 0.139 3.861 20 N -0.605 5.605 21 C 0.070 3.930 22 C 0.532 3.468 23 O -0.503 6.503 24 N -0.675 5.675 25 C 0.701 3.299 26 O -0.583 6.583 27 C 0.116 3.884 28 H 0.086 0.914 29 C 0.138 3.862 30 H 0.250 0.750 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.183 0.817 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.177 0.823 41 H 0.437 0.563 42 H 0.024 0.976 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -26.439 -2.138 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.070 3.930 11 C 0.022 3.978 12 H 0.111 0.889 13 O -0.313 6.313 14 C -0.038 4.038 15 C -0.056 4.056 16 N -0.328 5.328 17 C 0.275 3.725 18 O -0.458 6.458 19 C 0.015 3.985 20 N -0.342 5.342 21 C -0.055 4.055 22 C 0.320 3.680 23 O -0.375 6.375 24 N -0.344 5.344 25 C 0.402 3.598 26 O -0.460 6.460 27 C 0.010 3.990 28 H 0.104 0.896 29 C 0.011 3.989 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.169 0.831 37 H 0.200 0.800 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.194 0.806 41 H 0.280 0.720 42 H 0.043 0.957 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.892 -25.984 -1.634 26.195 hybrid contribution 1.179 1.449 0.732 2.006 sum -1.713 -24.535 -0.902 24.611 Atomic orbital electron populations 1.70119 1.06161 1.25698 1.57663 1.25648 0.96714 1.00943 1.02029 0.85115 0.77191 0.78604 0.78170 1.20253 1.21511 1.20494 1.19362 0.90868 0.83555 1.44040 0.90405 1.44612 1.02297 1.00708 1.87298 1.21058 0.83845 0.89164 0.98931 1.23565 0.95359 0.95202 0.83689 0.88947 1.87902 1.93578 1.24706 1.25105 1.23323 0.95668 0.80642 1.04194 1.22981 0.98587 1.04002 0.80012 1.47738 1.66416 1.06878 1.11790 1.22154 0.75657 0.89600 0.85125 1.90722 1.51766 1.82303 1.20988 1.21575 1.06631 0.83976 0.86295 1.47122 1.04815 1.51361 1.30928 1.22823 0.93660 0.98816 0.90157 1.21144 0.84429 0.78294 0.84086 1.90862 1.82435 1.36958 1.27234 1.44300 1.12670 1.48916 1.28525 1.15995 0.84697 0.78651 0.80423 1.91019 1.39994 1.56345 1.58596 1.21896 0.95944 0.81602 0.99572 0.89570 1.21638 0.94691 0.85204 0.97349 0.94030 0.95595 0.95488 0.90736 0.84919 0.90787 0.83067 0.79963 0.84526 0.85043 0.80618 0.72005 0.95716 0.95256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.31 21.65 0.22 -57.25 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 3 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.25 -14.59 10.28 84.03 0.86 -13.72 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -33.46 3.40 -691.71 -2.35 -35.81 16 10 C 0.20 9.83 5.04 86.92 0.44 10.27 16 11 C 0.08 2.97 4.02 31.74 0.13 3.09 16 12 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 13 O -0.39 -12.84 9.98 -148.98 -1.49 -14.33 16 14 C 0.04 0.66 7.02 72.17 0.51 1.16 16 15 C 0.07 0.97 6.26 86.47 0.54 1.51 16 16 N -0.60 -14.51 2.75 -792.60 -2.18 -16.69 16 17 C 0.49 11.27 7.74 87.66 0.68 11.94 16 18 O -0.58 -19.58 15.84 -3.02 -0.05 -19.63 16 19 C 0.14 1.45 4.97 85.63 0.43 1.87 16 20 N -0.61 -8.37 2.51 -846.24 -2.12 -10.49 16 21 C 0.07 0.56 7.66 85.76 0.66 1.21 16 22 C 0.53 7.77 8.81 87.94 0.77 8.54 16 23 O -0.50 -10.36 18.02 -2.91 -0.05 -10.42 16 24 N -0.67 -10.78 5.70 -441.12 -2.52 -13.30 16 25 C 0.70 14.49 8.68 179.44 1.56 16.05 16 26 O -0.58 -17.20 17.71 -3.84 -0.07 -17.27 16 27 C 0.12 4.18 3.20 46.08 0.15 4.32 16 28 H 0.09 3.52 7.07 -2.39 -0.02 3.50 16 29 C 0.14 6.09 6.80 86.57 0.59 6.68 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.03 1.48 7.32 -2.39 -0.02 1.46 16 32 H 0.03 1.51 7.43 -2.39 -0.02 1.49 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 36 H 0.15 0.35 5.95 -2.39 -0.01 0.34 16 37 H 0.18 -0.35 7.60 -2.39 -0.02 -0.37 16 38 H 0.14 1.20 7.88 -2.39 -0.02 1.18 16 39 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.44 5.79 8.96 -92.71 -0.83 4.96 16 42 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 1.27 7.32 -2.39 -0.02 1.25 16 Total: -1.00 -92.29 355.17 -0.56 -92.85 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.24 Total: 3.65 kcal Atomic # 6 Polarization: 42.14 SS G_CDS: 7.77 Total: 49.92 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -8.95 Total: -133.55 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -1.66 Total: -61.65 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -92.29 -0.56 -92.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083225647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.904 kcal (2) G-P(sol) polarization free energy of solvation -92.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds