Wall clock time and date at job start Tue Mar 31 2020 20:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99722 * 2 1 4 4 H 1.48498 * 109.47245 * 274.14180 * 3 2 1 5 5 H 1.48503 * 109.47488 * 34.14072 * 3 2 1 6 6 H 1.48499 * 109.47150 * 154.14316 * 3 2 1 7 7 C 1.38811 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00143 * 170.41551 * 7 2 1 9 9 N 1.36937 * 119.99936 * 350.42057 * 7 2 1 10 10 C 1.47022 * 125.65040 * 169.94056 * 9 7 2 11 11 C 1.54322 * 107.27303 * 178.97425 * 10 9 7 12 12 H 1.09002 * 110.71820 * 96.35204 * 11 10 9 13 13 N 1.46494 * 110.72080 * 219.44578 * 11 10 9 14 14 C 1.34777 * 119.99988 * 271.15655 * 13 11 10 15 15 O 1.21277 * 120.00300 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00216 * 179.97438 * 14 13 11 17 17 C 1.53968 * 113.58594 * 180.02562 * 16 14 13 18 18 C 1.52769 * 86.77258 * 139.27755 * 17 16 14 19 19 C 1.52771 * 88.12711 * 335.13259 * 18 17 16 20 20 N 1.46301 * 116.11266 * 216.79878 * 18 17 16 21 21 C 1.34872 * 106.11314 * 230.78680 * 20 18 17 22 22 O 1.21537 * 123.79404 * 180.02562 * 21 20 18 23 23 N 1.33950 * 112.41275 * 359.97438 * 21 20 18 24 24 C 1.35106 * 111.59667 * 359.97438 * 23 21 20 25 25 O 1.21237 * 127.41061 * 179.97438 * 24 23 21 26 26 C 1.55155 * 103.10329 * 337.90157 * 11 10 9 27 27 H 1.08995 * 111.00499 * 153.48812 * 26 11 10 28 28 O 1.42901 * 111.00122 * 277.33645 * 26 11 10 29 29 C 1.47426 * 125.64846 * 349.98304 * 9 7 2 30 30 H 0.97001 * 120.00481 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.87836 * 59.55991 * 10 9 7 32 32 H 1.08994 * 109.88188 * 298.39640 * 10 9 7 33 33 H 0.96996 * 120.00110 * 91.16064 * 13 11 10 34 34 H 1.09005 * 112.82218 * 48.90217 * 16 14 13 35 35 H 1.08999 * 113.66417 * 24.80300 * 17 16 14 36 36 H 1.09004 * 113.74687 * 253.75593 * 17 16 14 37 37 H 1.09004 * 113.65963 * 139.34215 * 19 18 17 38 38 H 1.08998 * 113.66020 * 270.39850 * 19 18 17 39 39 H 0.97003 * 126.94052 * 50.76429 * 20 18 17 40 40 H 0.96998 * 124.20494 * 180.02562 * 23 21 20 41 41 H 0.96702 * 114.00092 * 179.97438 * 28 26 11 42 42 H 1.09001 * 110.36532 * 322.93105 * 29 9 7 43 43 H 1.09000 * 110.36607 * 85.14609 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4100 2.0970 -1.3964 5 1 1.4941 2.6259 0.7858 6 1 3.5887 1.4166 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0789 -1.2085 -0.1563 9 7 1.3400 -2.3799 0.1963 10 6 1.9021 -3.7263 0.0155 11 6 0.7934 -4.7378 0.3750 12 1 0.2749 -5.0765 -0.5220 13 7 1.3490 -5.8760 1.1111 14 6 1.8111 -6.9506 0.4418 15 8 1.7676 -6.9752 -0.7699 16 6 2.3832 -8.1213 1.1990 17 6 2.8671 -9.2659 0.2900 18 6 4.0638 -9.3917 1.2312 19 6 3.8533 -7.9278 1.6137 20 7 5.3452 -9.7158 0.6039 21 6 5.8439 -10.7638 1.2909 22 8 6.9070 -11.2949 1.0361 23 7 5.0364 -11.1528 2.2864 24 6 3.9220 -10.3914 2.3491 25 8 3.0044 -10.4921 3.1350 26 6 -0.1578 -3.9104 1.2795 27 1 -1.1751 -4.2991 1.2354 28 8 0.3175 -3.8765 2.6267 29 6 -0.0651 -2.5077 0.6237 30 1 -0.4851 0.8400 0.0004 31 1 2.7572 -3.8629 0.6775 32 1 2.2078 -3.8642 -1.0215 33 1 1.3841 -5.8562 2.0803 34 1 1.7394 -8.4533 2.0135 35 1 3.1339 -8.9425 -0.7162 36 1 2.2126 -10.1375 0.2956 37 1 3.9855 -7.7302 2.6775 38 1 4.3979 -7.2275 0.9804 39 1 5.7534 -9.2676 -0.1534 40 1 5.2281 -11.8891 2.8880 41 1 -0.2444 -3.3703 3.2294 42 1 -0.3133 -1.7320 1.3482 43 1 -0.7305 -2.4483 -0.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083854135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:41 Heat of formation + Delta-G solvation = -103.010671 kcal Electronic energy + Delta-G solvation = -29577.884292 eV Core-core repulsion = 25238.393196 eV Total energy + Delta-G solvation = -4339.491096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.78148 -41.25917 -40.06087 -39.51010 -38.35896 -36.76428 -36.34995 -35.39012 -34.00953 -33.52155 -30.42314 -29.03285 -27.65741 -27.11076 -26.28652 -24.56426 -23.84617 -22.48162 -21.95354 -21.31575 -20.33930 -19.55382 -19.10760 -18.30258 -18.10101 -17.69806 -17.64300 -17.10004 -16.90011 -16.77765 -16.56700 -16.21434 -15.95555 -15.70338 -15.35588 -15.08032 -14.75041 -14.61013 -14.30282 -13.92300 -13.65260 -13.61083 -13.35546 -13.13651 -12.89315 -12.73731 -12.71582 -12.26527 -12.14024 -12.02203 -11.90453 -11.88244 -11.82361 -11.52042 -11.48209 -10.88398 -10.75687 -10.69204 -10.49419 -10.04070 -8.86314 -7.90108 -5.24081 0.38426 1.37622 1.46839 1.47067 1.57030 1.60444 1.88324 1.99552 2.18535 2.49852 2.86568 3.04339 3.22403 3.23640 3.30930 3.48002 3.63817 3.85071 3.88233 3.98297 4.18516 4.31217 4.34566 4.44302 4.51443 4.59723 4.71863 4.75178 4.82776 4.89893 5.03351 5.04599 5.10958 5.39823 5.40973 5.54738 5.63620 5.73629 5.82038 6.17479 6.31469 6.65123 6.91407 7.06336 7.07338 7.30488 7.72918 8.37908 9.21289 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.002419 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.998190 B =11570.913989 C =12199.956639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.616 5.616 10 C 0.133 3.867 11 C 0.154 3.846 12 H 0.096 0.904 13 N -0.695 5.695 14 C 0.523 3.477 15 O -0.578 6.578 16 C -0.126 4.126 17 C -0.093 4.093 18 C 0.090 3.910 19 C -0.099 4.099 20 N -0.695 5.695 21 C 0.707 3.293 22 O -0.579 6.579 23 N -0.669 5.669 24 C 0.558 3.442 25 O -0.471 6.471 26 C 0.090 3.910 27 H 0.096 0.904 28 O -0.561 6.561 29 C 0.150 3.850 30 H 0.250 0.750 31 H 0.029 0.971 32 H 0.008 0.992 33 H 0.419 0.581 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.451 0.549 40 H 0.443 0.557 41 H 0.396 0.604 42 H 0.050 0.950 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -21.296 7.571 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.342 5.342 10 C 0.006 3.994 11 C 0.047 3.953 12 H 0.113 0.887 13 N -0.346 5.346 14 C 0.311 3.689 15 O -0.457 6.457 16 C -0.147 4.147 17 C -0.132 4.132 18 C -0.002 4.002 19 C -0.138 4.138 20 N -0.359 5.359 21 C 0.407 3.593 22 O -0.456 6.456 23 N -0.341 5.341 24 C 0.344 3.656 25 O -0.340 6.340 26 C 0.030 3.970 27 H 0.113 0.887 28 O -0.369 6.369 29 C 0.024 3.976 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.257 0.743 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.298 0.702 40 H 0.287 0.713 41 H 0.246 0.754 42 H 0.069 0.931 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 4.481 -21.746 6.720 23.198 hybrid contribution 0.165 1.514 0.146 1.530 sum 4.646 -20.232 6.866 21.865 Atomic orbital electron populations 1.70095 1.06146 1.25631 1.57580 1.25577 0.96554 1.00816 1.02268 0.85111 0.77863 0.79293 0.77304 1.21542 1.21560 1.19607 1.19329 0.91495 0.84113 1.42305 0.90907 1.44544 1.10041 1.00462 1.79183 1.21656 0.95754 0.85219 0.96770 1.21769 0.93482 0.85149 0.94864 0.88655 1.45710 1.61748 1.15727 1.11409 1.20811 0.76748 0.83736 0.87652 1.90704 1.57463 1.81895 1.15653 1.22744 0.97975 0.93522 1.00499 1.22986 0.93182 0.98439 0.98548 1.22020 0.86777 0.97135 0.94274 1.23058 0.93464 0.92130 1.05106 1.45392 1.21089 1.33664 1.35708 1.16040 0.82713 0.80879 0.79680 1.91052 1.22689 1.60539 1.71289 1.44270 1.21171 1.35452 1.33172 1.19915 0.80906 0.81112 0.83705 1.90863 1.33576 1.69665 1.39934 1.23312 0.96401 0.94687 0.82639 0.88686 1.86207 1.55957 1.76517 1.18216 1.22003 0.85229 0.93988 0.96347 0.94084 0.95322 0.97350 0.74305 0.83712 0.86851 0.88190 0.87265 0.87063 0.70236 0.71311 0.75365 0.93129 0.97394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.86 10.68 21.65 0.23 -54.63 16 2 C -0.06 -3.27 5.40 84.86 0.46 -2.81 16 3 Si 0.98 44.97 29.56 68.60 2.03 46.99 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.60 10.24 84.03 0.86 -12.74 16 8 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 9 N -0.62 -31.15 3.40 -691.58 -2.35 -33.50 16 10 C 0.13 5.60 7.00 86.73 0.61 6.21 16 11 C 0.15 5.11 3.15 46.18 0.15 5.25 16 12 H 0.10 3.33 7.62 -2.39 -0.02 3.31 16 13 N -0.69 -17.40 5.08 -436.93 -2.22 -19.62 16 14 C 0.52 12.44 7.35 87.66 0.64 13.08 16 15 O -0.58 -18.34 15.58 -3.02 -0.05 -18.39 16 16 C -0.13 -1.85 3.92 -10.89 -0.04 -1.89 16 17 C -0.09 -1.21 6.96 30.84 0.21 -1.00 16 18 C 0.09 1.04 1.62 2.71 0.00 1.04 16 19 C -0.10 -1.17 7.18 30.84 0.22 -0.95 16 20 N -0.69 -8.12 6.35 -443.27 -2.82 -10.94 16 21 C 0.71 11.19 9.01 179.28 1.61 12.80 16 22 O -0.58 -13.69 18.04 -3.83 -0.07 -13.76 16 23 N -0.67 -7.82 5.73 -441.21 -2.53 -10.34 16 24 C 0.56 7.26 7.92 87.58 0.69 7.95 16 25 O -0.47 -8.06 17.62 -2.90 -0.05 -8.11 16 26 C 0.09 2.89 4.31 32.06 0.14 3.03 16 27 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 28 O -0.56 -15.82 12.23 -148.98 -1.82 -17.64 16 29 C 0.15 6.82 5.16 86.93 0.45 7.27 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.42 8.94 7.58 -92.71 -0.70 8.23 16 34 H 0.15 1.72 7.87 -2.38 -0.02 1.70 16 35 H 0.11 1.72 7.42 -2.39 -0.02 1.70 16 36 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.11 1.04 8.11 -2.38 -0.02 1.02 16 38 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.45 4.10 8.96 -92.71 -0.83 3.27 16 40 H 0.44 3.47 8.96 -92.71 -0.83 2.63 16 41 H 0.40 8.50 9.12 -74.06 -0.68 7.83 16 42 H 0.05 2.54 6.94 -2.39 -0.02 2.52 16 43 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 Total: -1.00 -76.98 362.13 -5.55 -82.53 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -1.92 Total: 20.14 kcal Atomic # 6 Polarization: 31.25 SS G_CDS: 6.01 Total: 37.26 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -9.68 Total: -129.04 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -1.99 Total: -57.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.98 -5.55 -82.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083854135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.481 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds