Wall clock time and date at job start Tue Mar 31 2020 20:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00108 * 2 1 4 4 H 1.48503 * 109.47139 * 240.00335 * 3 2 1 5 5 H 1.48501 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47281 * 120.00082 * 3 2 1 7 7 C 1.38813 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99745 * 163.08682 * 7 2 1 9 9 N 1.36939 * 120.00180 * 343.09123 * 7 2 1 10 10 C 1.46926 * 120.62863 * 331.80537 * 9 7 2 11 11 C 1.53166 * 108.76538 * 233.63334 * 10 9 7 12 12 C 1.53041 * 109.32678 * 305.35461 * 11 10 9 13 13 H 1.08999 * 109.45877 * 181.38697 * 12 11 10 14 14 N 1.46496 * 109.46266 * 301.36181 * 12 11 10 15 15 C 1.34779 * 119.99859 * 275.03015 * 14 12 11 16 16 O 1.21281 * 120.00280 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00033 * 180.02562 * 15 14 12 18 18 N 1.46505 * 109.47257 * 179.97438 * 17 15 14 19 19 C 1.36156 * 119.85139 * 269.72519 * 18 17 15 20 20 C 1.35543 * 119.25747 * 179.73182 * 19 18 17 21 21 C 1.40740 * 118.99813 * 0.55195 * 20 19 18 22 22 O 1.35165 * 120.16693 * 179.73323 * 21 20 19 23 23 N 1.32426 * 119.67150 * 359.70919 * 21 20 19 24 24 C 1.33271 * 120.72695 * 359.97438 * 23 21 20 25 25 O 1.21976 * 119.47816 * 179.97438 * 24 23 21 26 26 C 1.53042 * 109.52681 * 61.37626 * 12 11 10 27 27 H 1.08996 * 109.50201 * 58.62218 * 26 12 11 28 28 O 1.42896 * 109.49869 * 178.68864 * 26 12 11 29 29 C 1.46921 * 120.62990 * 151.82768 * 9 7 2 30 30 H 0.97001 * 119.99799 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58557 * 353.41578 * 10 9 7 32 32 H 1.08992 * 109.58801 * 113.70284 * 10 9 7 33 33 H 1.09001 * 109.47781 * 185.40920 * 11 10 9 34 34 H 1.08997 * 109.50387 * 65.31692 * 11 10 9 35 35 H 0.97000 * 120.00637 * 95.02617 * 14 12 11 36 36 H 1.08995 * 109.47842 * 59.99587 * 17 15 14 37 37 H 1.09005 * 109.46637 * 299.99087 * 17 15 14 38 38 H 1.08001 * 120.37424 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.50235 * 180.24319 * 20 19 18 40 40 H 0.96695 * 114.00191 * 179.97438 * 22 21 20 41 41 H 0.96699 * 114.00335 * 179.97438 * 28 26 12 42 42 H 1.09001 * 109.59116 * 6.58119 * 29 9 7 43 43 H 1.08998 * 109.70827 * 246.22331 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3699 -2.3626 0.3439 10 6 0.2263 -2.3412 1.2660 11 6 0.4985 -3.3209 2.4114 12 6 0.8130 -4.7022 1.8325 13 1 0.9830 -5.4070 2.6465 14 7 -0.3163 -5.1593 1.0190 15 6 -1.3586 -5.7832 1.6029 16 8 -1.3613 -5.9666 2.8018 17 6 -2.5200 -6.2538 0.7661 18 7 -3.5149 -6.8961 1.6286 19 6 -3.4431 -8.2350 1.8655 20 6 -4.3666 -8.8159 2.6698 21 6 -5.3826 -8.0184 3.2290 22 8 -6.3188 -8.5741 4.0300 23 7 -5.4165 -6.7208 2.9668 24 6 -4.4986 -6.1610 2.1794 25 8 -4.5518 -4.9637 1.9527 26 6 2.0682 -4.6179 0.9609 27 1 2.9033 -4.2548 1.5598 28 8 2.3788 -5.9139 0.4454 29 6 1.8138 -3.6527 -0.2013 30 1 -0.4850 0.8401 0.0004 31 1 0.0993 -1.3358 1.6674 32 1 -0.6774 -2.6392 0.7344 33 1 -0.3819 -3.3863 3.0508 34 1 1.3483 -2.9696 2.9966 35 1 -0.3141 -5.0128 0.0601 36 1 -2.1668 -6.9697 0.0240 37 1 -2.9732 -5.4007 0.2611 38 1 -2.6568 -8.8269 1.4207 39 1 -4.3264 -9.8755 2.8745 40 1 -6.9730 -7.9458 4.3651 41 1 3.1646 -5.9352 -0.1178 42 1 2.7343 -3.5127 -0.7681 43 1 1.0419 -4.0614 -0.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090403816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:35 Heat of formation + Delta-G solvation = -77.299597 kcal Electronic energy + Delta-G solvation = -30122.998541 eV Core-core repulsion = 25784.622361 eV Total energy + Delta-G solvation = -4338.376180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96341 -39.93429 -38.88439 -37.92235 -36.76559 -35.50989 -34.68135 -34.13997 -31.93195 -31.44316 -30.35757 -28.91791 -27.92269 -25.37041 -24.96727 -23.55714 -22.39124 -21.96655 -21.00294 -19.93335 -18.85964 -18.33995 -17.86998 -17.45040 -17.07796 -16.55315 -16.01628 -15.85518 -15.42178 -14.98344 -14.92926 -14.85589 -14.51650 -14.26054 -14.13978 -13.86205 -13.72335 -13.49070 -13.34747 -12.84255 -12.54786 -12.16362 -12.15447 -12.03379 -11.71733 -11.21045 -10.90017 -10.89105 -10.72655 -10.49035 -10.44872 -10.25170 -10.00334 -9.97327 -9.91850 -9.73311 -9.48470 -8.77549 -8.72790 -8.53693 -6.80607 -5.88219 -3.33993 0.47234 1.53461 2.11989 2.66170 2.96181 3.26914 3.32982 3.40100 3.40527 3.73438 4.02896 4.27154 4.30301 4.46057 4.52801 4.73424 4.81462 5.03823 5.11869 5.20930 5.25003 5.27111 5.41315 5.50379 5.62623 5.85370 5.89053 5.99422 6.17054 6.17996 6.38228 6.47822 6.58363 6.63851 6.81385 6.82200 7.25103 7.58126 7.62730 7.67743 7.69464 7.81991 8.07008 8.30785 8.33691 9.08874 9.71172 10.26103 11.19642 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002907 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.589546 B = 9630.195914 C =10699.801218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.154 4.154 12 C 0.168 3.832 13 H 0.079 0.921 14 N -0.697 5.697 15 C 0.503 3.497 16 O -0.539 6.539 17 C 0.074 3.926 18 N -0.508 5.508 19 C 0.215 3.785 20 C -0.290 4.290 21 C 0.457 3.543 22 O -0.450 6.450 23 N -0.613 5.613 24 C 0.659 3.341 25 O -0.521 6.521 26 C 0.076 3.924 27 H 0.067 0.933 28 O -0.572 6.572 29 C 0.119 3.881 30 H 0.257 0.743 31 H 0.090 0.910 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.404 0.596 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.182 0.818 39 H 0.164 0.836 40 H 0.416 0.584 41 H 0.375 0.625 42 H 0.059 0.941 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -20.762 0.981 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.194 4.194 12 C 0.064 3.936 13 H 0.097 0.903 14 N -0.348 5.348 15 C 0.287 3.713 16 O -0.416 6.416 17 C -0.053 4.053 18 N -0.224 5.224 19 C 0.078 3.922 20 C -0.317 4.317 21 C 0.255 3.745 22 O -0.245 6.245 23 N -0.370 5.370 24 C 0.360 3.640 25 O -0.394 6.394 26 C 0.015 3.985 27 H 0.085 0.915 28 O -0.377 6.377 29 C -0.009 4.009 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.240 0.760 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.199 0.801 39 H 0.181 0.819 40 H 0.273 0.727 41 H 0.221 0.779 42 H 0.078 0.922 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.551 -19.922 2.183 20.796 hybrid contribution 1.132 1.044 -0.834 1.752 sum -4.418 -18.878 1.349 19.435 Atomic orbital electron populations 1.70018 1.05286 1.25995 1.52658 1.25080 0.95292 0.98555 1.00272 0.86348 0.78918 0.83191 0.78134 1.20832 1.21533 1.20926 1.19083 0.92501 0.84592 1.43160 0.91646 1.43999 1.36002 1.01024 1.50015 1.20781 0.88463 0.98364 0.87744 1.22591 1.01591 0.94712 1.00530 1.20860 0.83435 0.96647 0.92672 0.90317 1.45828 1.19184 1.57820 1.11983 1.20427 0.83530 0.78660 0.88732 1.90725 1.79228 1.57078 1.14597 1.21866 0.88642 1.02156 0.92609 1.46038 1.26000 1.08002 1.42373 1.22325 0.95563 0.83675 0.90587 1.20545 0.99357 1.02916 1.08869 1.20420 0.84524 0.87892 0.81687 1.84970 1.39462 1.40025 1.60052 1.69660 1.30008 1.10851 1.26439 1.17289 0.79032 0.87372 0.80271 1.91066 1.74648 1.12026 1.61689 1.22764 0.96073 0.83027 0.96651 0.91472 1.86448 1.50677 1.30594 1.69966 1.21520 0.98516 0.87783 0.93043 0.93307 0.89227 0.95897 0.91821 0.91398 0.75994 0.85800 0.84704 0.80127 0.81872 0.72678 0.77888 0.92231 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 11.20 55.49 0.62 -24.90 16 2 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -13.64 2.99 -172.34 -0.52 -14.16 16 10 C 0.17 4.00 5.04 -3.72 -0.02 3.99 16 11 C -0.15 -3.05 5.77 -26.62 -0.15 -3.20 16 12 C 0.17 2.88 2.47 -67.89 -0.17 2.72 16 13 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 14 N -0.70 -10.73 4.16 -53.77 -0.22 -10.95 16 15 C 0.50 7.76 7.86 -10.99 -0.09 7.68 16 16 O -0.54 -10.31 16.09 5.56 0.09 -10.23 16 17 C 0.07 0.84 5.83 -5.19 -0.03 0.81 16 18 N -0.51 -6.29 2.08 -123.16 -0.26 -6.55 16 19 C 0.21 1.73 10.40 -16.59 -0.17 1.56 16 20 C -0.29 -2.31 10.03 -39.60 -0.40 -2.71 16 21 C 0.46 4.83 7.91 -16.35 -0.13 4.70 16 22 O -0.45 -3.45 13.55 -17.19 -0.23 -3.69 16 23 N -0.61 -9.10 10.40 -16.72 -0.17 -9.27 16 24 C 0.66 11.07 8.34 -88.43 -0.74 10.33 16 25 O -0.52 -11.06 16.72 4.94 0.08 -10.98 16 26 C 0.08 1.20 3.36 -26.61 -0.09 1.11 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -7.61 13.21 -35.23 -0.47 -8.08 16 29 C 0.12 2.18 5.84 -3.71 -0.02 2.16 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 32 H 0.02 0.56 7.74 -51.93 -0.40 0.16 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.40 5.75 6.87 -40.82 -0.28 5.47 16 36 H 0.12 0.75 8.03 -51.93 -0.42 0.33 16 37 H 0.14 1.66 7.38 -51.93 -0.38 1.28 16 38 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.42 1.84 8.98 45.56 0.41 2.25 16 41 H 0.37 3.46 9.08 45.56 0.41 3.88 16 42 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.02 0.39 6.64 -51.93 -0.35 0.04 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -38.80 361.70 -6.67 -45.48 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.79 Total: 9.47 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: -2.23 Total: 22.24 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.55 Total: -65.83 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.53 Total: -32.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.80 -6.67 -45.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.821 kcal (2) G-P(sol) polarization free energy of solvation -38.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds