Wall clock time and date at job start Tue Mar 31 2020 20:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00108 * 2 1 4 4 H 1.48503 * 109.47139 * 240.00335 * 3 2 1 5 5 H 1.48501 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47281 * 120.00082 * 3 2 1 7 7 C 1.38813 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99745 * 163.08682 * 7 2 1 9 9 N 1.36939 * 120.00180 * 343.09123 * 7 2 1 10 10 C 1.46926 * 120.62863 * 331.80537 * 9 7 2 11 11 C 1.53166 * 108.76538 * 233.63334 * 10 9 7 12 12 C 1.53041 * 109.32678 * 305.35461 * 11 10 9 13 13 H 1.08999 * 109.45877 * 181.38697 * 12 11 10 14 14 N 1.46496 * 109.46266 * 301.36181 * 12 11 10 15 15 C 1.34779 * 119.99859 * 275.03015 * 14 12 11 16 16 O 1.21281 * 120.00280 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00033 * 180.02562 * 15 14 12 18 18 N 1.46505 * 109.47257 * 179.97438 * 17 15 14 19 19 C 1.36156 * 119.85139 * 269.72519 * 18 17 15 20 20 C 1.35543 * 119.25747 * 179.73182 * 19 18 17 21 21 C 1.40740 * 118.99813 * 0.55195 * 20 19 18 22 22 O 1.35165 * 120.16693 * 179.73323 * 21 20 19 23 23 N 1.32426 * 119.67150 * 359.70919 * 21 20 19 24 24 C 1.33271 * 120.72695 * 359.97438 * 23 21 20 25 25 O 1.21976 * 119.47816 * 179.97438 * 24 23 21 26 26 C 1.53042 * 109.52681 * 61.37626 * 12 11 10 27 27 H 1.08996 * 109.50201 * 58.62218 * 26 12 11 28 28 O 1.42896 * 109.49869 * 178.68864 * 26 12 11 29 29 C 1.46921 * 120.62990 * 151.82768 * 9 7 2 30 30 H 0.97001 * 119.99799 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58557 * 353.41578 * 10 9 7 32 32 H 1.08992 * 109.58801 * 113.70284 * 10 9 7 33 33 H 1.09001 * 109.47781 * 185.40920 * 11 10 9 34 34 H 1.08997 * 109.50387 * 65.31692 * 11 10 9 35 35 H 0.97000 * 120.00637 * 95.02617 * 14 12 11 36 36 H 1.08995 * 109.47842 * 59.99587 * 17 15 14 37 37 H 1.09005 * 109.46637 * 299.99087 * 17 15 14 38 38 H 1.08001 * 120.37424 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.50235 * 180.24319 * 20 19 18 40 40 H 0.96695 * 114.00191 * 179.97438 * 22 21 20 41 41 H 0.96699 * 114.00335 * 179.97438 * 28 26 12 42 42 H 1.09001 * 109.59116 * 6.58119 * 29 9 7 43 43 H 1.08998 * 109.70827 * 246.22331 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3699 -2.3626 0.3439 10 6 0.2263 -2.3412 1.2660 11 6 0.4985 -3.3209 2.4114 12 6 0.8130 -4.7022 1.8325 13 1 0.9830 -5.4070 2.6465 14 7 -0.3163 -5.1593 1.0190 15 6 -1.3586 -5.7832 1.6029 16 8 -1.3613 -5.9666 2.8018 17 6 -2.5200 -6.2538 0.7661 18 7 -3.5149 -6.8961 1.6286 19 6 -3.4431 -8.2350 1.8655 20 6 -4.3666 -8.8159 2.6698 21 6 -5.3826 -8.0184 3.2290 22 8 -6.3188 -8.5741 4.0300 23 7 -5.4165 -6.7208 2.9668 24 6 -4.4986 -6.1610 2.1794 25 8 -4.5518 -4.9637 1.9527 26 6 2.0682 -4.6179 0.9609 27 1 2.9033 -4.2548 1.5598 28 8 2.3788 -5.9139 0.4454 29 6 1.8138 -3.6527 -0.2013 30 1 -0.4850 0.8401 0.0004 31 1 0.0993 -1.3358 1.6674 32 1 -0.6774 -2.6392 0.7344 33 1 -0.3819 -3.3863 3.0508 34 1 1.3483 -2.9696 2.9966 35 1 -0.3141 -5.0128 0.0601 36 1 -2.1668 -6.9697 0.0240 37 1 -2.9732 -5.4007 0.2611 38 1 -2.6568 -8.8269 1.4207 39 1 -4.3264 -9.8755 2.8745 40 1 -6.9730 -7.9458 4.3651 41 1 3.1646 -5.9352 -0.1178 42 1 2.7343 -3.5127 -0.7681 43 1 1.0419 -4.0614 -0.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090403816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:34 Heat of formation + Delta-G solvation = -114.662376 kcal Electronic energy + Delta-G solvation = -30124.618713 eV Core-core repulsion = 25784.622361 eV Total energy + Delta-G solvation = -4339.996352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.91053 -41.20816 -39.80688 -39.22224 -37.82964 -36.92638 -35.71401 -35.52056 -33.61138 -32.43025 -31.91203 -30.36951 -29.05539 -27.13938 -25.80017 -24.59659 -23.93334 -23.61855 -22.23869 -20.76564 -20.37099 -19.18993 -19.05450 -18.69692 -18.28411 -17.94240 -17.12360 -16.91610 -16.84183 -16.59693 -16.19442 -15.89518 -15.61223 -15.55906 -15.37267 -15.00151 -14.83205 -14.80733 -14.52993 -14.21244 -13.92905 -13.56313 -13.36970 -13.20784 -13.06825 -13.01645 -12.72031 -12.41308 -12.24711 -12.04417 -12.01286 -11.86420 -11.45668 -11.29780 -11.03760 -10.97299 -10.92566 -10.51753 -10.11472 -9.67571 -8.72211 -7.90116 -5.37181 -0.29704 0.68224 1.22076 1.46115 1.47808 1.49653 1.55450 2.14454 2.27310 2.48420 2.72442 3.13628 3.26534 3.28943 3.55690 3.64463 3.69601 3.80620 3.90780 4.04603 4.11335 4.19159 4.24381 4.36176 4.44465 4.49544 4.59696 4.66237 4.85833 4.89397 5.02035 5.15195 5.20197 5.33549 5.37652 5.45620 5.61125 5.67543 6.15490 6.33849 6.43051 6.67479 6.91242 7.04455 7.10173 7.11562 7.80171 8.30777 9.15610 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002907 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.589546 B = 9630.195914 C =10699.801218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.142 4.142 12 C 0.172 3.828 13 H 0.078 0.922 14 N -0.693 5.693 15 C 0.500 3.500 16 O -0.579 6.579 17 C 0.080 3.920 18 N -0.511 5.511 19 C 0.216 3.784 20 C -0.283 4.283 21 C 0.455 3.545 22 O -0.440 6.440 23 N -0.658 5.658 24 C 0.647 3.353 25 O -0.594 6.594 26 C 0.100 3.900 27 H 0.068 0.932 28 O -0.566 6.566 29 C 0.117 3.883 30 H 0.248 0.752 31 H 0.047 0.953 32 H 0.002 0.998 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.411 0.589 36 H 0.189 0.811 37 H 0.120 0.880 38 H 0.238 0.762 39 H 0.205 0.795 40 H 0.429 0.571 41 H 0.397 0.603 42 H 0.071 0.929 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -24.493 0.032 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.206 1.206 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.326 5.326 10 C 0.061 3.939 11 C -0.182 4.182 12 C 0.067 3.933 13 H 0.096 0.904 14 N -0.345 5.345 15 C 0.286 3.714 16 O -0.459 6.459 17 C -0.046 4.046 18 N -0.226 5.226 19 C 0.082 3.918 20 C -0.308 4.308 21 C 0.256 3.744 22 O -0.236 6.236 23 N -0.418 5.418 24 C 0.349 3.651 25 O -0.473 6.473 26 C 0.038 3.962 27 H 0.086 0.914 28 O -0.373 6.373 29 C -0.009 4.009 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.206 0.794 37 H 0.138 0.862 38 H 0.255 0.745 39 H 0.222 0.778 40 H 0.288 0.712 41 H 0.247 0.753 42 H 0.090 0.910 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.633 -23.780 1.218 24.087 hybrid contribution 0.525 2.007 -0.492 2.132 sum -3.108 -21.773 0.726 22.006 Atomic orbital electron populations 1.70186 1.06799 1.25896 1.54956 1.25821 0.95902 1.01663 1.01114 0.85376 0.77519 0.79300 0.78452 1.19572 1.22717 1.20554 1.19484 0.93017 0.85634 1.41235 0.90682 1.44153 1.35620 1.02323 1.50522 1.20404 0.88157 0.96830 0.88555 1.22374 1.00861 0.95971 0.98977 1.20661 0.84872 0.94418 0.93355 0.90403 1.45772 1.18980 1.57566 1.12138 1.21134 0.84013 0.77715 0.88582 1.90702 1.80058 1.58672 1.16514 1.22024 0.86522 1.03613 0.92457 1.45904 1.25022 1.09557 1.42086 1.23322 0.96593 0.81850 0.90012 1.21099 0.97776 1.04484 1.07458 1.20876 0.85291 0.86992 0.81250 1.84975 1.39295 1.40068 1.59241 1.69489 1.30976 1.13412 1.27876 1.17513 0.80068 0.87010 0.80497 1.90996 1.76742 1.14943 1.64577 1.22256 0.95241 0.83543 0.95115 0.91364 1.86417 1.52175 1.28264 1.70434 1.21717 0.99070 0.85946 0.94175 0.94289 0.93418 0.98039 0.93610 0.91206 0.75177 0.79350 0.86197 0.74548 0.77808 0.71166 0.75300 0.91009 0.95118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 11.20 21.65 0.24 -54.99 16 2 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 3 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.26 -13.68 9.58 84.03 0.81 -12.88 16 8 H 0.08 3.69 7.88 -2.91 -0.02 3.67 16 9 N -0.60 -27.94 2.99 -699.16 -2.09 -30.04 16 10 C 0.19 9.02 5.04 86.35 0.44 9.45 16 11 C -0.14 -5.73 5.77 30.66 0.18 -5.56 16 12 C 0.17 5.71 2.47 45.02 0.11 5.82 16 13 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 14 N -0.69 -20.49 4.16 -442.41 -1.84 -22.33 16 15 C 0.50 14.94 7.86 87.66 0.69 15.63 16 16 O -0.58 -22.05 16.09 -3.03 -0.05 -22.10 16 17 C 0.08 1.67 5.83 85.63 0.50 2.16 16 18 N -0.51 -11.94 2.08 -661.77 -1.38 -13.32 16 19 C 0.22 2.63 10.40 83.40 0.87 3.50 16 20 C -0.28 -3.48 10.03 22.26 0.22 -3.25 16 21 C 0.45 8.98 7.91 85.22 0.67 9.65 16 22 O -0.44 -5.99 13.55 -84.43 -1.14 -7.13 16 23 N -0.66 -20.05 10.40 -438.80 -4.56 -24.61 16 24 C 0.65 22.52 8.34 179.58 1.50 24.01 16 25 O -0.59 -27.14 16.72 -5.24 -0.09 -27.22 16 26 C 0.10 2.89 3.36 30.67 0.10 3.00 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 O -0.57 -12.67 13.21 -148.98 -1.97 -14.64 16 29 C 0.12 4.04 5.84 86.37 0.50 4.55 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 32 H 0.00 0.08 7.74 -2.39 -0.02 0.06 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.41 10.96 6.87 -92.71 -0.64 10.32 16 36 H 0.19 1.36 8.03 -2.39 -0.02 1.34 16 37 H 0.12 2.98 7.38 -2.38 -0.02 2.97 16 38 H 0.24 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.43 3.46 8.98 -74.06 -0.66 2.80 16 41 H 0.40 5.42 9.08 -74.06 -0.67 4.75 16 42 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.03 1.03 6.64 -2.39 -0.02 1.02 16 Total: -1.00 -92.05 361.70 -4.72 -96.78 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.88 Total: 19.57 kcal Atomic # 6 Polarization: 46.82 SS G_CDS: 7.00 Total: 53.82 kcal Atomic # 7 Polarization: -135.66 SS G_CDS: -9.63 Total: -145.29 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -3.25 Total: -71.09 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -92.05 -4.72 -96.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090403816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.886 kcal (2) G-P(sol) polarization free energy of solvation -92.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds