Wall clock time and date at job start Tue Mar 31 2020 20:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48503 * 109.47179 * 239.99955 * 3 2 1 5 5 H 1.48498 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47467 * 120.00285 * 3 2 1 7 7 C 1.38807 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.47574 * 134.49185 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11788 * 155.35541 * 10 9 7 12 12 N 1.46496 * 113.74364 * 137.94935 * 11 10 9 13 13 C 1.46762 * 124.34930 * 120.00181 * 12 11 10 14 14 C 1.54478 * 105.47530 * 163.00306 * 13 12 11 15 15 H 1.09001 * 110.97254 * 143.56803 * 14 13 12 16 16 N 1.46497 * 110.97175 * 267.29808 * 14 13 12 17 17 C 1.34776 * 120.00201 * 205.00236 * 16 14 13 18 18 O 1.21290 * 120.00056 * 359.97438 * 17 16 14 19 19 C 1.50694 * 120.00253 * 179.97438 * 17 16 14 20 20 H 1.08998 * 110.50718 * 321.28695 * 19 17 16 21 21 C 1.54090 * 110.69116 * 84.11298 * 19 17 16 22 22 O 1.45705 * 104.00976 * 118.43595 * 21 19 17 23 23 C 1.33775 * 109.47563 * 0.34094 * 22 21 19 24 24 O 1.21513 * 123.07329 * 179.89652 * 23 22 21 25 25 N 1.34009 * 113.85453 * 359.62776 * 23 22 21 26 26 C 1.54629 * 101.76584 * 25.41778 * 14 13 12 27 27 C 1.34418 * 124.35245 * 300.01970 * 12 11 10 28 28 O 1.21283 * 124.93946 * 0.35701 * 27 12 11 29 29 C 1.47575 * 134.48914 * 359.97438 * 9 7 2 30 30 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 31 31 H 1.08995 * 113.76990 * 41.05233 * 10 9 7 32 32 H 1.09007 * 113.76640 * 269.65146 * 10 9 7 33 33 H 1.09002 * 113.73927 * 269.15339 * 11 10 9 34 34 H 1.09000 * 110.24940 * 44.00582 * 13 12 11 35 35 H 1.09000 * 110.32344 * 282.04366 * 13 12 11 36 36 H 0.96998 * 120.00445 * 24.99785 * 16 14 13 37 37 H 1.09001 * 110.52440 * 237.26318 * 21 19 17 38 38 H 1.08997 * 110.52151 * 0.02562 * 21 19 17 39 39 H 0.96992 * 125.55704 * 180.25420 * 25 23 22 40 40 H 1.08996 * 110.49139 * 93.87697 * 26 14 13 41 41 H 1.09000 * 110.48734 * 216.52698 * 26 14 13 42 42 H 1.09003 * 113.76993 * 90.34329 * 29 9 7 43 43 H 1.08998 * 113.77536 * 318.94924 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 1.7203 -3.8101 0.0015 11 6 0.3468 -4.0827 0.6410 12 7 -0.3331 -5.2613 0.0982 13 6 -0.7260 -6.4304 0.8937 14 6 -1.7617 -7.1861 0.0321 15 1 -1.6537 -8.2645 0.1487 16 7 -3.1251 -6.7603 0.3574 17 6 -4.1628 -7.5894 0.1286 18 8 -3.9678 -8.6880 -0.3470 19 6 -5.5652 -7.1515 0.4638 20 1 -5.5759 -6.5838 1.3942 21 6 -6.1648 -6.3184 -0.6855 22 8 -7.3206 -7.0935 -1.1173 23 6 -7.4225 -8.1973 -0.3683 24 8 -8.3033 -9.0209 -0.5174 25 7 -6.4610 -8.3144 0.5579 26 6 -1.3688 -6.7412 -1.3958 27 6 -0.6771 -5.4112 -1.1926 28 8 -0.4643 -4.5982 -2.0671 29 6 -0.1031 -2.7574 0.0005 30 1 -0.4851 0.8400 0.0004 31 1 2.5621 -4.0319 0.6573 32 1 1.8327 -4.2354 -0.9959 33 1 0.3585 -4.0632 1.7308 34 1 -1.1773 -6.1127 1.8336 35 1 0.1390 -7.0649 1.0868 36 1 -3.2811 -5.8816 0.7375 37 1 -6.4723 -5.3365 -0.3257 38 1 -5.4482 -6.2209 -1.5009 39 1 -6.3704 -9.0468 1.1873 40 1 -0.6857 -7.4617 -1.8455 41 1 -2.2573 -6.6183 -2.0151 42 1 -0.5270 -2.8731 -0.9970 43 1 -0.7168 -2.1391 0.6556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094734330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:59 Heat of formation + Delta-G solvation = -56.769506 kcal Electronic energy + Delta-G solvation = -29512.801098 eV Core-core repulsion = 25175.315169 eV Total energy + Delta-G solvation = -4337.485929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26896 -40.87798 -39.62461 -37.56386 -37.36790 -36.57625 -35.13674 -34.26664 -32.32363 -31.02951 -29.90486 -27.71712 -27.23960 -25.28296 -24.82428 -23.52586 -22.84876 -22.19732 -21.18833 -20.49709 -18.70183 -18.56359 -18.43087 -17.61291 -17.11383 -16.84779 -16.38173 -16.36764 -15.71468 -15.26986 -15.14815 -14.77476 -14.69120 -14.62111 -14.23348 -14.06591 -13.99828 -13.70360 -13.55980 -13.23560 -12.81441 -12.62095 -12.12179 -11.99570 -11.85360 -11.50442 -11.46550 -11.35203 -11.12299 -10.89002 -10.84052 -10.77556 -10.29455 -10.07401 -9.88678 -9.80254 -9.57225 -9.32522 -8.73175 -8.31769 -6.89184 -5.79680 -3.11557 1.78841 1.99347 2.28597 2.50905 2.79993 3.06895 3.11388 3.37818 3.42556 3.43383 3.47098 3.83453 4.04567 4.10517 4.25006 4.45217 4.49120 4.57849 4.68868 4.84244 4.87622 5.13966 5.24171 5.26573 5.35836 5.43500 5.51534 5.58991 5.70989 5.88724 6.20012 6.24791 6.42506 6.47875 6.71552 6.76482 6.83347 7.19484 7.36929 7.49674 7.49892 7.53275 7.63714 7.94360 8.43196 9.01706 9.67682 10.55798 11.37499 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002418 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.704127 B =11577.033681 C =12448.466237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.610 5.610 13 C 0.095 3.905 14 C 0.133 3.867 15 H 0.119 0.881 16 N -0.712 5.712 17 C 0.506 3.494 18 O -0.515 6.515 19 C 0.076 3.924 20 H 0.130 0.870 21 C 0.054 3.946 22 O -0.321 6.321 23 C 0.652 3.348 24 O -0.517 6.517 25 N -0.711 5.711 26 C -0.167 4.167 27 C 0.511 3.489 28 O -0.506 6.506 29 C 0.153 3.847 30 H 0.254 0.746 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.409 0.591 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.440 0.560 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -16.419 6.521 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.005 4.005 12 N -0.345 5.345 13 C -0.029 4.029 14 C 0.027 3.973 15 H 0.137 0.863 16 N -0.365 5.365 17 C 0.289 3.711 18 O -0.389 6.389 19 C -0.034 4.034 20 H 0.148 0.852 21 C -0.022 4.022 22 O -0.230 6.230 23 C 0.404 3.596 24 O -0.401 6.401 25 N -0.384 5.384 26 C -0.209 4.209 27 C 0.297 3.703 28 O -0.380 6.380 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.284 0.716 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.504 -16.561 5.339 19.827 hybrid contribution 0.805 1.057 0.534 1.432 sum -8.699 -15.505 5.872 18.723 Atomic orbital electron populations 1.69804 1.05019 1.25452 1.56411 1.24789 0.95709 0.97552 1.02311 0.86178 0.78477 0.83014 0.77944 1.21151 1.21521 1.21066 1.18939 0.90190 0.81700 1.44090 0.90245 1.45650 1.02450 0.99156 1.85832 1.22927 0.94279 0.86934 0.97514 1.24092 0.94356 0.83706 0.98304 1.48556 1.59102 1.18053 1.08795 1.22338 0.97328 0.88152 0.95106 1.21934 0.80427 1.00812 0.94095 0.86298 1.45999 1.06085 1.19562 1.64899 1.20563 0.86306 0.85441 0.78783 1.90800 1.85016 1.20802 1.42295 1.22315 0.89420 0.89166 1.02521 0.85222 1.24301 0.86374 0.95184 0.96324 1.87333 1.46781 1.33768 1.55144 1.18433 0.82061 0.81204 0.77885 1.91104 1.36803 1.40971 1.71176 1.45658 1.27722 1.26064 1.38926 1.22840 1.02959 0.97290 0.97815 1.20669 0.79140 0.87921 0.82564 1.90804 1.55029 1.46798 1.45410 1.22757 0.88422 0.87088 0.99041 0.93597 0.93945 0.94346 0.87668 0.89671 0.89559 0.75544 0.85685 0.86960 0.71575 0.86981 0.88064 0.92474 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.38 55.49 0.63 -26.34 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.49 3.70 -178.13 -0.66 -16.15 16 10 C 0.11 2.25 8.45 -2.98 -0.03 2.23 16 11 C 0.10 1.65 4.82 -70.17 -0.34 1.31 16 12 N -0.61 -7.72 3.15 -166.66 -0.53 -8.24 16 13 C 0.10 0.69 6.97 -3.12 -0.02 0.66 16 14 C 0.13 0.88 3.53 -66.30 -0.23 0.65 16 15 H 0.12 0.74 7.54 -51.93 -0.39 0.35 16 16 N -0.71 -3.75 5.12 -52.23 -0.27 -4.02 16 17 C 0.51 3.30 6.94 -10.99 -0.08 3.22 16 18 O -0.52 -5.49 16.24 5.55 0.09 -5.40 16 19 C 0.08 0.33 4.17 -68.19 -0.28 0.05 16 20 H 0.13 0.09 8.14 -51.93 -0.42 -0.34 16 21 C 0.05 0.26 7.87 37.73 0.30 0.56 16 22 O -0.32 -3.11 11.09 -37.84 -0.42 -3.53 16 23 C 0.65 7.10 9.16 53.71 0.49 7.59 16 24 O -0.52 -7.75 18.04 -19.12 -0.34 -8.10 16 25 N -0.71 -4.93 5.66 -59.36 -0.34 -5.27 16 26 C -0.17 -1.59 6.59 -26.74 -0.18 -1.76 16 27 C 0.51 7.39 7.44 -10.86 -0.08 7.31 16 28 O -0.51 -10.28 14.63 5.55 0.08 -10.19 16 29 C 0.15 3.51 6.88 -2.99 -0.02 3.49 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.84 7.38 -51.92 -0.38 0.45 16 33 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.41 1.48 8.66 -40.82 -0.35 1.13 16 37 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.11 0.54 7.73 -51.93 -0.40 0.13 16 39 H 0.44 2.44 8.96 -40.82 -0.37 2.08 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 42 H 0.06 1.46 5.60 -51.93 -0.29 1.17 16 43 H 0.07 1.73 7.15 -51.93 -0.37 1.36 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -40.42 363.11 -7.51 -47.93 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.48 Total: -1.75 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: -0.72 Total: 18.63 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -1.16 Total: -60.02 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.59 Total: -27.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -40.42 -7.51 -47.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094734330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.844 kcal (2) G-P(sol) polarization free energy of solvation -40.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds