Wall clock time and date at job start Tue Mar 31 2020 20:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48503 * 109.47179 * 239.99955 * 3 2 1 5 5 H 1.48498 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47467 * 120.00285 * 3 2 1 7 7 C 1.38807 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.47574 * 134.49185 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11788 * 155.35541 * 10 9 7 12 12 N 1.46496 * 113.74364 * 137.94935 * 11 10 9 13 13 C 1.46762 * 124.34930 * 120.00181 * 12 11 10 14 14 C 1.54478 * 105.47530 * 163.00306 * 13 12 11 15 15 H 1.09001 * 110.97254 * 143.56803 * 14 13 12 16 16 N 1.46497 * 110.97175 * 267.29808 * 14 13 12 17 17 C 1.34776 * 120.00201 * 205.00236 * 16 14 13 18 18 O 1.21290 * 120.00056 * 359.97438 * 17 16 14 19 19 C 1.50694 * 120.00253 * 179.97438 * 17 16 14 20 20 H 1.08998 * 110.50718 * 321.28695 * 19 17 16 21 21 C 1.54090 * 110.69116 * 84.11298 * 19 17 16 22 22 O 1.45705 * 104.00976 * 118.43595 * 21 19 17 23 23 C 1.33775 * 109.47563 * 0.34094 * 22 21 19 24 24 O 1.21513 * 123.07329 * 179.89652 * 23 22 21 25 25 N 1.34009 * 113.85453 * 359.62776 * 23 22 21 26 26 C 1.54629 * 101.76584 * 25.41778 * 14 13 12 27 27 C 1.34418 * 124.35245 * 300.01970 * 12 11 10 28 28 O 1.21283 * 124.93946 * 0.35701 * 27 12 11 29 29 C 1.47575 * 134.48914 * 359.97438 * 9 7 2 30 30 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 31 31 H 1.08995 * 113.76990 * 41.05233 * 10 9 7 32 32 H 1.09007 * 113.76640 * 269.65146 * 10 9 7 33 33 H 1.09002 * 113.73927 * 269.15339 * 11 10 9 34 34 H 1.09000 * 110.24940 * 44.00582 * 13 12 11 35 35 H 1.09000 * 110.32344 * 282.04366 * 13 12 11 36 36 H 0.96998 * 120.00445 * 24.99785 * 16 14 13 37 37 H 1.09001 * 110.52440 * 237.26318 * 21 19 17 38 38 H 1.08997 * 110.52151 * 0.02562 * 21 19 17 39 39 H 0.96992 * 125.55704 * 180.25420 * 25 23 22 40 40 H 1.08996 * 110.49139 * 93.87697 * 26 14 13 41 41 H 1.09000 * 110.48734 * 216.52698 * 26 14 13 42 42 H 1.09003 * 113.76993 * 90.34329 * 29 9 7 43 43 H 1.08998 * 113.77536 * 318.94924 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 1.7203 -3.8101 0.0015 11 6 0.3468 -4.0827 0.6410 12 7 -0.3331 -5.2613 0.0982 13 6 -0.7260 -6.4304 0.8937 14 6 -1.7617 -7.1861 0.0321 15 1 -1.6537 -8.2645 0.1487 16 7 -3.1251 -6.7603 0.3574 17 6 -4.1628 -7.5894 0.1286 18 8 -3.9678 -8.6880 -0.3470 19 6 -5.5652 -7.1515 0.4638 20 1 -5.5759 -6.5838 1.3942 21 6 -6.1648 -6.3184 -0.6855 22 8 -7.3206 -7.0935 -1.1173 23 6 -7.4225 -8.1973 -0.3683 24 8 -8.3033 -9.0209 -0.5174 25 7 -6.4610 -8.3144 0.5579 26 6 -1.3688 -6.7412 -1.3958 27 6 -0.6771 -5.4112 -1.1926 28 8 -0.4643 -4.5982 -2.0671 29 6 -0.1031 -2.7574 0.0005 30 1 -0.4851 0.8400 0.0004 31 1 2.5621 -4.0319 0.6573 32 1 1.8327 -4.2354 -0.9959 33 1 0.3585 -4.0632 1.7308 34 1 -1.1773 -6.1127 1.8336 35 1 0.1390 -7.0649 1.0868 36 1 -3.2811 -5.8816 0.7375 37 1 -6.4723 -5.3365 -0.3257 38 1 -5.4482 -6.2209 -1.5009 39 1 -6.3704 -9.0468 1.1873 40 1 -0.6857 -7.4617 -1.8455 41 1 -2.2573 -6.6183 -2.0151 42 1 -0.5270 -2.8731 -0.9970 43 1 -0.7168 -2.1391 0.6556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094734330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:58 Heat of formation + Delta-G solvation = -92.493729 kcal Electronic energy + Delta-G solvation = -29514.350216 eV Core-core repulsion = 25175.315169 eV Total energy + Delta-G solvation = -4339.035047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.89209 -41.85656 -40.44221 -38.93281 -38.36572 -37.61712 -35.75206 -35.18501 -34.13936 -32.02773 -30.62619 -29.14983 -28.33150 -26.57821 -25.84256 -25.15031 -23.54412 -22.86761 -22.07380 -21.74131 -19.71864 -19.33506 -19.07289 -18.76542 -18.26258 -17.87572 -17.54609 -17.09065 -16.94459 -16.45969 -15.99922 -15.97433 -15.72465 -15.42180 -15.26225 -15.09503 -14.91784 -14.67953 -14.49001 -14.15616 -14.09570 -13.57089 -13.38843 -13.25168 -13.16056 -12.82153 -12.75457 -12.63719 -12.44097 -12.04327 -12.00659 -11.93999 -11.89351 -11.53853 -11.47548 -11.02507 -10.62168 -10.38158 -10.17774 -9.52623 -8.90811 -7.91348 -5.24882 1.26488 1.37703 1.44706 1.48763 1.54588 1.63009 1.65987 1.94121 2.03349 2.49873 2.58630 3.06975 3.27416 3.33921 3.43446 3.49023 3.51998 3.78327 3.82719 3.87856 4.04342 4.25711 4.30049 4.42959 4.48814 4.57384 4.66061 4.72995 4.79587 4.83163 4.90534 4.95590 5.24782 5.27014 5.36251 5.51876 5.67764 5.90160 5.93896 6.07235 6.31695 6.37160 6.90587 6.91555 7.05165 7.30030 7.59503 8.54954 9.25357 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.002418 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.704127 B =11577.033681 C =12448.466237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.637 5.637 10 C 0.108 3.892 11 C 0.140 3.860 12 N -0.605 5.605 13 C 0.096 3.904 14 C 0.146 3.854 15 H 0.136 0.864 16 N -0.701 5.701 17 C 0.512 3.488 18 O -0.557 6.557 19 C 0.082 3.918 20 H 0.182 0.818 21 C 0.046 3.954 22 O -0.342 6.342 23 C 0.647 3.353 24 O -0.572 6.572 25 N -0.698 5.698 26 C -0.156 4.156 27 C 0.501 3.499 28 O -0.576 6.576 29 C 0.150 3.850 30 H 0.249 0.751 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.420 0.580 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.447 0.553 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.024 0.976 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 -17.308 9.063 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.364 5.364 10 C -0.018 4.018 11 C 0.037 3.963 12 N -0.339 5.339 13 C -0.026 4.026 14 C 0.040 3.960 15 H 0.154 0.846 16 N -0.354 5.354 17 C 0.296 3.704 18 O -0.434 6.434 19 C -0.027 4.027 20 H 0.198 0.802 21 C -0.028 4.028 22 O -0.251 6.251 23 C 0.400 3.600 24 O -0.460 6.460 25 N -0.370 5.370 26 C -0.198 4.198 27 C 0.290 3.710 28 O -0.455 6.455 29 C 0.024 3.976 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.258 0.742 37 H 0.180 0.820 38 H 0.129 0.871 39 H 0.292 0.708 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.042 0.958 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.716 -17.483 7.949 21.090 hybrid contribution 0.649 1.318 -0.321 1.504 sum -8.067 -16.164 7.627 19.609 Atomic orbital electron populations 1.69998 1.06393 1.25711 1.57758 1.25651 0.96647 1.00894 1.02697 0.85133 0.77186 0.78625 0.78247 1.21045 1.21822 1.19505 1.19353 0.90762 0.83278 1.43260 0.90022 1.46110 1.03921 1.00514 1.85861 1.23041 0.97232 0.84207 0.97323 1.23328 0.91266 0.82661 0.99092 1.48474 1.57956 1.18367 1.09085 1.22712 0.98609 0.86074 0.95194 1.21873 0.80852 1.01558 0.91721 0.84639 1.45918 1.05437 1.19887 1.64165 1.20840 0.87099 0.84752 0.77706 1.90801 1.85672 1.22746 1.44230 1.22622 0.87310 0.88238 1.04503 0.80151 1.24733 0.85192 0.96210 0.96693 1.87292 1.48593 1.33786 1.55455 1.18612 0.82151 0.80984 0.78231 1.91048 1.39155 1.42928 1.72833 1.45615 1.26916 1.26882 1.37575 1.22801 1.02511 0.94405 1.00057 1.21548 0.78436 0.88764 0.82266 1.90774 1.57696 1.49444 1.47578 1.22568 0.87114 0.90528 0.97434 0.94201 0.91625 0.96212 0.84319 0.86605 0.86915 0.74180 0.82037 0.87095 0.70810 0.85533 0.88441 0.95790 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 11.38 21.65 0.25 -56.94 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.64 -33.08 3.70 -717.48 -2.65 -35.73 16 10 C 0.11 4.32 8.45 86.48 0.73 5.05 16 11 C 0.14 4.47 4.82 46.74 0.23 4.69 16 12 N -0.61 -13.75 3.15 -799.80 -2.52 -16.28 16 13 C 0.10 0.90 6.97 86.83 0.61 1.50 16 14 C 0.15 1.34 3.53 46.05 0.16 1.51 16 15 H 0.14 1.04 7.54 -2.39 -0.02 1.02 16 16 N -0.70 -4.54 5.12 -437.53 -2.24 -6.78 16 17 C 0.51 4.99 6.94 87.66 0.61 5.60 16 18 O -0.56 -10.57 16.24 -3.06 -0.05 -10.62 16 19 C 0.08 0.44 4.17 44.50 0.19 0.62 16 20 H 0.18 -0.77 8.14 -2.39 -0.02 -0.79 16 21 C 0.05 0.34 7.87 72.35 0.57 0.91 16 22 O -0.34 -6.39 11.09 -47.35 -0.53 -6.92 16 23 C 0.65 13.90 9.16 129.91 1.19 15.09 16 24 O -0.57 -17.74 18.04 19.64 0.35 -17.39 16 25 N -0.70 -8.39 5.66 -573.41 -3.24 -11.64 16 26 C -0.16 -2.62 6.59 30.59 0.20 -2.42 16 27 C 0.50 14.09 7.44 87.90 0.65 14.75 16 28 O -0.58 -24.32 14.63 -3.04 -0.04 -24.36 16 29 C 0.15 7.01 6.88 86.47 0.60 7.61 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.02 0.88 7.38 -2.38 -0.02 0.86 16 33 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.12 0.52 8.08 -2.39 -0.02 0.50 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.42 1.10 8.66 -92.71 -0.80 0.30 16 37 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.11 0.85 7.73 -2.39 -0.02 0.83 16 39 H 0.45 4.18 8.96 -92.71 -0.83 3.34 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 1.76 8.09 -2.39 -0.02 1.74 16 42 H 0.02 1.30 5.60 -2.39 -0.01 1.29 16 43 H 0.04 2.29 7.15 -2.39 -0.02 2.27 16 Total: -1.00 -96.41 363.11 -2.10 -98.51 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -0.55 Total: 1.48 kcal Atomic # 6 Polarization: 31.88 SS G_CDS: 7.09 Total: 38.97 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -10.41 Total: -127.36 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.26 Total: -59.29 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -96.41 -2.10 -98.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094734330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.019 kcal (2) G-P(sol) polarization free energy of solvation -96.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds