Wall clock time and date at job start Tue Mar 31 2020 20:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46747 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99444 * 3 2 1 6 6 H 1.48503 * 109.47204 * 59.99506 * 3 2 1 7 7 C 1.38809 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.47572 * 134.49017 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11734 * 155.35891 * 10 9 7 12 12 N 1.46497 * 113.74321 * 137.95042 * 11 10 9 13 13 C 1.46762 * 124.34850 * 122.12097 * 12 11 10 14 14 C 1.54479 * 105.53509 * 163.21275 * 13 12 11 15 15 H 1.09002 * 110.97085 * 143.33080 * 14 13 12 16 16 N 1.46501 * 111.00223 * 267.07465 * 14 13 12 17 17 C 1.34780 * 119.99988 * 198.84560 * 16 14 13 18 18 O 1.21280 * 119.99755 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99789 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.50828 * 42.74565 * 19 17 16 21 21 C 1.54094 * 110.56611 * 280.00442 * 19 17 16 22 22 O 1.45703 * 104.01005 * 241.43143 * 21 19 17 23 23 C 1.33772 * 109.47368 * 359.97438 * 22 21 19 24 24 O 1.21508 * 123.07218 * 179.97438 * 23 22 21 25 25 N 1.34003 * 113.85988 * 0.02562 * 23 22 21 26 26 C 1.54623 * 101.76448 * 25.20998 * 14 13 12 27 27 C 1.34417 * 124.35094 * 301.94861 * 12 11 10 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 12 11 29 29 C 1.47809 * 134.45428 * 359.86813 * 9 7 2 30 30 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77356 * 41.05688 * 10 9 7 32 32 H 1.09000 * 113.77234 * 269.65830 * 10 9 7 33 33 H 1.09000 * 113.74381 * 269.15345 * 11 10 9 34 34 H 1.09004 * 110.38933 * 44.10688 * 13 12 11 35 35 H 1.08995 * 110.11843 * 282.18104 * 13 12 11 36 36 H 0.97004 * 119.99926 * 18.85712 * 16 14 13 37 37 H 1.09002 * 110.52339 * 0.05807 * 21 19 17 38 38 H 1.08993 * 110.52030 * 122.65623 * 21 19 17 39 39 H 0.96998 * 125.55894 * 180.02562 * 25 23 22 40 40 H 1.09000 * 110.48720 * 216.52574 * 26 14 13 41 41 H 1.09003 * 110.60041 * 93.93250 * 26 14 13 42 42 H 1.08997 * 113.76968 * 90.37992 * 29 9 7 43 43 H 1.09000 * 113.83983 * 318.91027 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8100 0.0015 11 6 0.3466 -4.0826 0.6409 12 7 -0.3333 -5.2613 0.0980 13 6 -0.7658 -6.4109 0.9012 14 6 -1.7821 -7.1716 0.0210 15 1 -1.6876 -8.2489 0.1581 16 7 -3.1510 -6.7289 0.2973 17 6 -4.1949 -7.5012 -0.0637 18 8 -4.0010 -8.5630 -0.6169 19 6 -5.6030 -7.0455 0.2201 20 1 -5.7153 -5.9861 -0.0104 21 6 -5.9757 -7.3220 1.6895 22 8 -7.1016 -8.2426 1.6006 23 6 -7.3753 -8.4894 0.3147 24 8 -8.2716 -9.2281 -0.0425 25 7 -6.5702 -7.8486 -0.5436 26 6 -1.3420 -6.7542 -1.4013 27 6 -0.6440 -5.4272 -1.1991 28 8 -0.3962 -4.6314 -2.0802 29 6 -0.1057 -2.7570 0.0025 30 1 -0.4850 0.8400 -0.0004 31 1 2.5620 -4.0320 0.6574 32 1 1.8328 -4.2355 -0.9957 33 1 0.3582 -4.0631 1.7307 34 1 -1.2424 -6.0734 1.8216 35 1 0.0868 -7.0499 1.1309 36 1 -3.3061 -5.8798 0.7400 37 1 -5.1417 -7.7881 2.2141 38 1 -6.2721 -6.3995 2.1886 39 1 -6.6177 -7.9047 -1.5108 40 1 -2.2101 -6.6337 -2.0493 41 1 -0.6530 -7.4876 -1.8203 42 1 -0.5311 -2.8722 -0.9944 43 1 -0.7188 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094734331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:03 Heat of formation + Delta-G solvation = -57.274433 kcal Electronic energy + Delta-G solvation = -29445.377648 eV Core-core repulsion = 25107.869824 eV Total energy + Delta-G solvation = -4337.507824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28873 -40.88027 -39.61803 -37.57793 -37.35898 -36.57653 -35.13874 -34.26952 -32.33058 -31.05422 -29.87753 -27.74314 -27.24801 -25.29661 -24.83140 -23.53197 -22.85668 -22.20295 -21.18122 -20.51229 -18.71851 -18.59221 -18.34162 -17.58310 -17.20947 -16.85844 -16.40393 -16.38216 -15.55890 -15.51858 -15.07481 -14.79348 -14.71864 -14.56710 -14.32100 -14.06282 -14.00142 -13.67120 -13.56287 -13.22067 -12.87637 -12.60988 -12.11641 -11.96972 -11.86770 -11.50212 -11.47464 -11.38509 -11.13733 -10.91381 -10.83593 -10.76288 -10.30984 -10.02915 -9.88179 -9.80505 -9.58007 -9.33357 -8.75280 -8.31875 -6.89784 -5.80492 -3.12155 1.80336 1.99297 2.25895 2.50642 2.80610 3.04191 3.10840 3.36640 3.42433 3.44173 3.44448 3.82738 4.05273 4.08601 4.25762 4.43945 4.44591 4.57691 4.65027 4.80554 4.86338 5.13296 5.23246 5.25678 5.36016 5.43779 5.51474 5.59306 5.70576 5.89281 6.19611 6.25919 6.42720 6.48092 6.69920 6.76488 6.83369 7.18855 7.36656 7.49178 7.50198 7.51377 7.63054 7.93429 8.43244 9.00994 9.67104 10.55057 11.36904 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002345 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.620992 B =11936.178067 C =12654.288746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.610 5.610 13 C 0.096 3.904 14 C 0.134 3.866 15 H 0.117 0.883 16 N -0.713 5.713 17 C 0.506 3.494 18 O -0.514 6.514 19 C 0.074 3.926 20 H 0.132 0.868 21 C 0.055 3.945 22 O -0.322 6.322 23 C 0.652 3.348 24 O -0.516 6.516 25 N -0.709 5.709 26 C -0.166 4.166 27 C 0.511 3.489 28 O -0.507 6.507 29 C 0.154 3.846 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.442 0.558 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.054 0.946 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -16.119 5.834 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.028 4.028 14 C 0.029 3.971 15 H 0.134 0.866 16 N -0.366 5.366 17 C 0.289 3.711 18 O -0.388 6.388 19 C -0.036 4.036 20 H 0.150 0.850 21 C -0.021 4.021 22 O -0.232 6.232 23 C 0.404 3.596 24 O -0.400 6.400 25 N -0.382 5.382 26 C -0.208 4.208 27 C 0.298 3.702 28 O -0.381 6.381 29 C 0.028 3.972 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.286 0.714 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.577 -16.516 5.199 19.787 hybrid contribution 0.674 1.469 -0.406 1.666 sum -8.903 -15.047 4.793 18.129 Atomic orbital electron populations 1.69826 1.05024 1.25201 1.56639 1.24794 0.95716 0.97567 1.02386 0.86028 0.78750 0.83601 0.77263 1.20439 1.21702 1.21685 1.19037 0.90249 0.81681 1.43748 0.90124 1.45716 1.02412 0.99184 1.85832 1.22918 0.94220 0.86889 0.97583 1.24083 0.94351 0.83658 0.98322 1.48557 1.58940 1.18981 1.08057 1.22322 0.97164 0.88557 0.94806 1.21912 0.80293 1.00458 0.94463 0.86557 1.46009 1.05422 1.23810 1.61395 1.20551 0.86358 0.84827 0.79351 1.90798 1.85425 1.22147 1.40471 1.22334 0.88584 0.99238 0.93456 0.85017 1.24274 0.88811 0.95041 0.93980 1.87316 1.49068 1.61770 1.25041 1.18409 0.81848 0.79566 0.79785 1.91107 1.32708 1.38847 1.77347 1.45662 1.32827 1.49440 1.10304 1.22818 1.02726 0.97327 0.97903 1.20674 0.79186 0.87749 0.82634 1.90806 1.54229 1.47831 1.45264 1.22760 0.88397 0.87181 0.98849 0.93716 0.93933 0.94228 0.87621 0.89627 0.89506 0.75574 0.87064 0.85846 0.71414 0.88111 0.87023 0.92784 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 11.39 55.49 0.63 -26.36 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.51 3.70 -177.92 -0.66 -16.17 16 10 C 0.11 2.26 8.43 -2.97 -0.03 2.24 16 11 C 0.10 1.66 4.81 -70.16 -0.34 1.32 16 12 N -0.61 -7.75 3.16 -166.66 -0.53 -8.28 16 13 C 0.10 0.68 6.96 -3.12 -0.02 0.66 16 14 C 0.13 0.89 3.42 -66.30 -0.23 0.66 16 15 H 0.12 0.71 7.72 -51.93 -0.40 0.30 16 16 N -0.71 -3.75 5.16 -52.23 -0.27 -4.02 16 17 C 0.51 3.34 6.95 -10.98 -0.08 3.26 16 18 O -0.51 -5.52 16.30 5.56 0.09 -5.43 16 19 C 0.07 0.33 4.17 -68.19 -0.28 0.05 16 20 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 21 C 0.05 0.20 7.87 37.73 0.30 0.49 16 22 O -0.32 -2.82 11.09 -37.83 -0.42 -3.24 16 23 C 0.65 6.93 9.16 53.71 0.49 7.42 16 24 O -0.52 -7.67 18.04 -19.11 -0.34 -8.01 16 25 N -0.71 -5.18 5.63 -59.36 -0.33 -5.51 16 26 C -0.17 -1.61 6.58 -26.74 -0.18 -1.79 16 27 C 0.51 7.50 7.42 -10.86 -0.08 7.42 16 28 O -0.51 -10.41 14.61 5.55 0.08 -10.33 16 29 C 0.15 3.54 6.90 -2.85 -0.02 3.52 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.87 7.22 -51.93 -0.37 0.49 16 33 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.09 0.44 8.04 -51.93 -0.42 0.02 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.41 1.41 8.58 -40.82 -0.35 1.06 16 37 H 0.11 0.27 7.72 -51.93 -0.40 -0.14 16 38 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.44 2.85 8.96 -40.82 -0.37 2.48 16 40 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.39 5.75 -51.93 -0.30 1.09 16 43 H 0.07 1.74 7.16 -51.93 -0.37 1.37 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -40.67 363.07 -7.50 -48.17 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.48 Total: -1.87 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -0.72 Total: 18.60 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -1.16 Total: -60.33 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.59 Total: -27.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -40.67 -7.50 -48.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094734331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.102 kcal (2) G-P(sol) polarization free energy of solvation -40.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds