Wall clock time and date at job start Tue Mar 31 2020 20:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46747 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99444 * 3 2 1 6 6 H 1.48503 * 109.47204 * 59.99506 * 3 2 1 7 7 C 1.38809 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.47572 * 134.49017 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11734 * 155.35891 * 10 9 7 12 12 N 1.46497 * 113.74321 * 137.95042 * 11 10 9 13 13 C 1.46762 * 124.34850 * 122.12097 * 12 11 10 14 14 C 1.54479 * 105.53509 * 163.21275 * 13 12 11 15 15 H 1.09002 * 110.97085 * 143.33080 * 14 13 12 16 16 N 1.46501 * 111.00223 * 267.07465 * 14 13 12 17 17 C 1.34780 * 119.99988 * 198.84560 * 16 14 13 18 18 O 1.21280 * 119.99755 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99789 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.50828 * 42.74565 * 19 17 16 21 21 C 1.54094 * 110.56611 * 280.00442 * 19 17 16 22 22 O 1.45703 * 104.01005 * 241.43143 * 21 19 17 23 23 C 1.33772 * 109.47368 * 359.97438 * 22 21 19 24 24 O 1.21508 * 123.07218 * 179.97438 * 23 22 21 25 25 N 1.34003 * 113.85988 * 0.02562 * 23 22 21 26 26 C 1.54623 * 101.76448 * 25.20998 * 14 13 12 27 27 C 1.34417 * 124.35094 * 301.94861 * 12 11 10 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 12 11 29 29 C 1.47809 * 134.45428 * 359.86813 * 9 7 2 30 30 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77356 * 41.05688 * 10 9 7 32 32 H 1.09000 * 113.77234 * 269.65830 * 10 9 7 33 33 H 1.09000 * 113.74381 * 269.15345 * 11 10 9 34 34 H 1.09004 * 110.38933 * 44.10688 * 13 12 11 35 35 H 1.08995 * 110.11843 * 282.18104 * 13 12 11 36 36 H 0.97004 * 119.99926 * 18.85712 * 16 14 13 37 37 H 1.09002 * 110.52339 * 0.05807 * 21 19 17 38 38 H 1.08993 * 110.52030 * 122.65623 * 21 19 17 39 39 H 0.96998 * 125.55894 * 180.02562 * 25 23 22 40 40 H 1.09000 * 110.48720 * 216.52574 * 26 14 13 41 41 H 1.09003 * 110.60041 * 93.93250 * 26 14 13 42 42 H 1.08997 * 113.76968 * 90.37992 * 29 9 7 43 43 H 1.09000 * 113.83983 * 318.91027 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8100 0.0015 11 6 0.3466 -4.0826 0.6409 12 7 -0.3333 -5.2613 0.0980 13 6 -0.7658 -6.4109 0.9012 14 6 -1.7821 -7.1716 0.0210 15 1 -1.6876 -8.2489 0.1581 16 7 -3.1510 -6.7289 0.2973 17 6 -4.1949 -7.5012 -0.0637 18 8 -4.0010 -8.5630 -0.6169 19 6 -5.6030 -7.0455 0.2201 20 1 -5.7153 -5.9861 -0.0104 21 6 -5.9757 -7.3220 1.6895 22 8 -7.1016 -8.2426 1.6006 23 6 -7.3753 -8.4894 0.3147 24 8 -8.2716 -9.2281 -0.0425 25 7 -6.5702 -7.8486 -0.5436 26 6 -1.3420 -6.7542 -1.4013 27 6 -0.6440 -5.4272 -1.1991 28 8 -0.3962 -4.6314 -2.0802 29 6 -0.1057 -2.7570 0.0025 30 1 -0.4850 0.8400 -0.0004 31 1 2.5620 -4.0320 0.6574 32 1 1.8328 -4.2355 -0.9957 33 1 0.3582 -4.0631 1.7307 34 1 -1.2424 -6.0734 1.8216 35 1 0.0868 -7.0499 1.1309 36 1 -3.3061 -5.8798 0.7400 37 1 -5.1417 -7.7881 2.2141 38 1 -6.2721 -6.3995 2.1886 39 1 -6.6177 -7.9047 -1.5108 40 1 -2.2101 -6.6337 -2.0493 41 1 -0.6530 -7.4876 -1.8203 42 1 -0.5311 -2.8722 -0.9944 43 1 -0.7188 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094734331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:02 Heat of formation + Delta-G solvation = -93.307090 kcal Electronic energy + Delta-G solvation = -29446.940141 eV Core-core repulsion = 25107.869824 eV Total energy + Delta-G solvation = -4339.070317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.87640 -41.85589 -40.43352 -38.92167 -38.35022 -37.61911 -35.73384 -35.18773 -34.14572 -32.04396 -30.57989 -29.15013 -28.35500 -26.58694 -25.80398 -25.16132 -23.52130 -22.86872 -22.09049 -21.72980 -19.73188 -19.32121 -18.99170 -18.76942 -18.20919 -17.94074 -17.56437 -17.08007 -16.96770 -16.36887 -16.23346 -15.82204 -15.71307 -15.40780 -15.22780 -15.14490 -14.94459 -14.58300 -14.48639 -14.18118 -14.10364 -13.47903 -13.40798 -13.31192 -13.18916 -12.85679 -12.74353 -12.65467 -12.38743 -12.02613 -12.01957 -11.90575 -11.84241 -11.53178 -11.47477 -11.04763 -10.64677 -10.37914 -10.17939 -9.53033 -8.91820 -7.92327 -5.25672 1.27994 1.40365 1.44355 1.46347 1.56188 1.61907 1.65523 1.95805 2.03736 2.49106 2.59233 3.09925 3.26808 3.33930 3.44154 3.48143 3.51191 3.80007 3.82263 3.88397 4.09319 4.25683 4.29772 4.47500 4.52798 4.56751 4.65627 4.73119 4.79550 4.83671 4.90369 4.95318 5.24172 5.25972 5.36755 5.50968 5.65251 5.88881 5.92740 6.09262 6.31129 6.37947 6.90048 6.90811 7.05943 7.29310 7.58634 8.54010 9.24835 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002345 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.620992 B =11936.178067 C =12654.288746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.638 5.638 10 C 0.108 3.892 11 C 0.141 3.859 12 N -0.606 5.606 13 C 0.096 3.904 14 C 0.147 3.853 15 H 0.135 0.865 16 N -0.702 5.702 17 C 0.511 3.489 18 O -0.557 6.557 19 C 0.076 3.924 20 H 0.169 0.831 21 C 0.051 3.949 22 O -0.338 6.338 23 C 0.649 3.351 24 O -0.573 6.573 25 N -0.703 5.703 26 C -0.155 4.155 27 C 0.501 3.499 28 O -0.577 6.577 29 C 0.151 3.849 30 H 0.249 0.751 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.421 0.579 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.444 0.556 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.020 0.980 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 -16.886 8.282 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.100 0.900 9 N -0.364 5.364 10 C -0.018 4.018 11 C 0.037 3.963 12 N -0.339 5.339 13 C -0.026 4.026 14 C 0.041 3.959 15 H 0.153 0.847 16 N -0.355 5.355 17 C 0.295 3.705 18 O -0.434 6.434 19 C -0.033 4.033 20 H 0.187 0.813 21 C -0.023 4.023 22 O -0.248 6.248 23 C 0.402 3.598 24 O -0.461 6.461 25 N -0.374 5.374 26 C -0.197 4.197 27 C 0.290 3.710 28 O -0.457 6.457 29 C 0.025 3.975 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.259 0.741 37 H 0.146 0.854 38 H 0.181 0.819 39 H 0.288 0.712 40 H 0.112 0.888 41 H 0.144 0.856 42 H 0.037 0.963 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.801 -17.307 7.715 20.893 hybrid contribution 0.523 1.689 -1.199 2.136 sum -8.278 -15.618 6.516 18.839 Atomic orbital electron populations 1.70012 1.06400 1.25541 1.57965 1.25653 0.96658 1.00894 1.02787 0.84990 0.78163 0.79233 0.76789 1.19019 1.22431 1.21108 1.19429 0.90768 0.83254 1.42902 0.89985 1.46177 1.03881 1.00537 1.85835 1.23031 0.97223 0.84170 0.97366 1.23327 0.91209 0.82563 0.99175 1.48479 1.57818 1.19247 1.08342 1.22720 0.98417 0.86569 0.94847 1.21870 0.80711 1.01352 0.91954 0.84730 1.45929 1.04747 1.24089 1.60747 1.20840 0.87197 0.84087 0.78334 1.90797 1.86062 1.24075 1.42498 1.22641 0.86483 1.00453 0.93706 0.81345 1.24789 0.87995 0.95941 0.93578 1.87277 1.50782 1.62886 1.23856 1.18555 0.81574 0.79138 0.80547 1.91050 1.35201 1.41355 1.78497 1.45681 1.32572 1.48813 1.10383 1.22776 1.02200 0.94499 1.00191 1.21559 0.78490 0.88583 0.82408 1.90775 1.56963 1.50473 1.47470 1.22572 0.87091 0.90682 0.97166 0.94233 0.91580 0.96190 0.84116 0.86305 0.86753 0.74123 0.85443 0.81902 0.71205 0.88808 0.85576 0.96258 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.21 11.39 21.65 0.25 -56.97 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.98 45.72 29.55 68.60 2.03 47.74 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.24 -13.36 10.70 84.03 0.90 -12.46 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.64 -33.09 3.70 -716.82 -2.65 -35.75 16 10 C 0.11 4.33 8.43 86.49 0.73 5.06 16 11 C 0.14 4.48 4.81 46.75 0.22 4.70 16 12 N -0.61 -13.78 3.16 -799.77 -2.52 -16.30 16 13 C 0.10 0.86 6.96 86.83 0.60 1.47 16 14 C 0.15 1.34 3.42 46.05 0.16 1.50 16 15 H 0.14 0.97 7.72 -2.39 -0.02 0.95 16 16 N -0.70 -4.55 5.16 -437.54 -2.26 -6.81 16 17 C 0.51 5.16 6.95 87.66 0.61 5.76 16 18 O -0.56 -10.76 16.30 -3.03 -0.05 -10.81 16 19 C 0.08 0.44 4.17 44.50 0.19 0.62 16 20 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 21 C 0.05 0.18 7.87 72.35 0.57 0.75 16 22 O -0.34 -5.40 11.09 -47.32 -0.52 -5.92 16 23 C 0.65 13.57 9.16 129.91 1.19 14.76 16 24 O -0.57 -17.66 18.04 19.66 0.35 -17.30 16 25 N -0.70 -9.39 5.63 -573.42 -3.23 -12.62 16 26 C -0.16 -2.69 6.58 30.59 0.20 -2.49 16 27 C 0.50 14.30 7.42 87.90 0.65 14.95 16 28 O -0.58 -24.71 14.61 -3.04 -0.04 -24.75 16 29 C 0.15 7.08 6.90 86.44 0.60 7.67 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.02 0.89 7.22 -2.39 -0.02 0.88 16 33 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.12 0.42 8.04 -2.38 -0.02 0.40 16 35 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.42 0.94 8.58 -92.70 -0.79 0.15 16 37 H 0.13 0.06 7.72 -2.39 -0.02 0.04 16 38 H 0.16 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.44 5.48 8.96 -92.71 -0.83 4.65 16 40 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 41 H 0.13 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.02 1.05 5.75 -2.39 -0.01 1.04 16 43 H 0.05 2.34 7.16 -2.39 -0.02 2.33 16 Total: -1.00 -97.23 363.07 -2.11 -99.33 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -0.54 Total: 1.20 kcal Atomic # 6 Polarization: 31.86 SS G_CDS: 7.09 Total: 38.95 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -10.42 Total: -128.44 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.26 Total: -58.78 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -97.23 -2.11 -99.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094734331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.027 kcal (2) G-P(sol) polarization free energy of solvation -97.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds