Wall clock time and date at job start Tue Mar 31 2020 20:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48507 * 109.47174 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.47545 * 29.99591 * 3 2 1 6 6 H 1.48497 * 109.47464 * 150.00142 * 3 2 1 7 7 C 1.38950 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99906 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99983 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99740 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.46847 * 110.99825 * 293.95547 * 13 12 10 15 15 C 1.53034 * 109.52218 * 174.16306 * 14 13 12 16 16 C 1.53120 * 109.28048 * 59.17856 * 15 14 13 17 17 H 1.08999 * 109.52241 * 62.31535 * 16 15 14 18 18 N 1.46494 * 109.52464 * 182.43877 * 16 15 14 19 19 C 1.34781 * 120.00418 * 275.00218 * 18 16 15 20 20 O 1.21495 * 119.99664 * 359.97438 * 19 18 16 21 21 C 1.48329 * 120.00189 * 179.97438 * 19 18 16 22 22 C 1.42266 * 126.93737 * 179.97438 * 21 19 18 23 23 C 1.35312 * 103.92448 * 180.02562 * 22 21 19 24 24 O 1.34015 * 106.66911 * 0.02562 * 23 22 21 25 25 N 1.20913 * 111.84278 * 359.97438 * 24 23 22 26 26 C 1.53119 * 109.15898 * 302.34462 * 16 15 14 27 27 H 1.09007 * 109.50194 * 177.59401 * 26 16 15 28 28 O 1.42898 * 109.50579 * 297.71428 * 26 16 15 29 29 C 1.46850 * 111.00050 * 169.74577 * 13 12 10 30 30 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00141 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47006 * 59.99970 * 12 10 9 33 33 H 1.09001 * 109.47015 * 300.00363 * 12 10 9 34 34 H 1.08997 * 109.46408 * 54.14303 * 14 13 12 35 35 H 1.09007 * 109.45487 * 294.17332 * 14 13 12 36 36 H 1.08993 * 109.50188 * 299.23564 * 15 14 13 37 37 H 1.09001 * 109.53300 * 179.13517 * 15 14 13 38 38 H 0.97005 * 119.99884 * 94.99955 * 18 16 15 39 39 H 1.08001 * 128.04091 * 0.02562 * 22 21 19 40 40 H 1.08006 * 126.67147 * 180.02562 * 23 22 21 41 41 H 0.96693 * 114.00083 * 180.02562 * 28 26 16 42 42 H 1.09000 * 109.45951 * 305.85771 * 29 13 12 43 43 H 1.09007 * 109.46114 * 65.82708 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9794 0.0005 14 6 2.9636 -6.0182 -1.2523 15 6 4.0438 -7.0982 -1.1587 16 6 3.3817 -8.4545 -0.9010 17 1 2.7328 -8.7082 -1.7393 18 7 4.4142 -9.4831 -0.7525 19 6 4.9264 -10.0864 -1.8435 20 8 4.5314 -9.7775 -2.9501 21 6 5.9722 -11.1274 -1.6931 22 6 6.6107 -11.8547 -2.7358 23 6 7.4718 -12.6700 -2.0841 24 8 7.3250 -12.4176 -0.7762 25 7 6.4937 -11.5633 -0.5734 26 6 2.5523 -8.3729 0.3835 27 1 2.0440 -9.3228 0.5495 28 8 3.4121 -8.0913 1.4896 29 6 1.5153 -7.2560 0.2452 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6170 -4.9209 -0.8897 33 1 0.6176 -4.9204 0.8903 34 1 3.4327 -5.0490 -1.4215 35 1 2.2927 -6.2464 -2.0805 36 1 4.7231 -6.8633 -0.3393 37 1 4.6019 -7.1376 -2.0942 38 1 4.7293 -9.7299 0.1311 39 1 6.4463 -11.7748 -3.8003 40 1 8.1465 -13.3853 -2.5311 41 1 2.9529 -8.0258 2.3380 42 1 0.9324 -7.1857 1.1635 43 1 0.8512 -7.4784 -0.5902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099707138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:27 Heat of formation + Delta-G solvation = -40.447142 kcal Electronic energy + Delta-G solvation = -29065.780590 eV Core-core repulsion = 24729.002452 eV Total energy + Delta-G solvation = -4336.778138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.47220 -40.36916 -39.07680 -37.90978 -35.65161 -34.89185 -34.36720 -33.82299 -32.34922 -31.45219 -31.02833 -29.85974 -27.39241 -25.38455 -24.26809 -23.38428 -23.15477 -22.50516 -20.67101 -20.12709 -19.19293 -18.78819 -18.12705 -17.85616 -17.22698 -16.95918 -16.61206 -15.91074 -15.37319 -15.18312 -15.06305 -14.79316 -14.51936 -14.25345 -14.03581 -13.91565 -13.77700 -13.55206 -13.36706 -12.88497 -12.73116 -12.17269 -12.08193 -11.81073 -11.61571 -11.49114 -11.26728 -11.09615 -10.86350 -10.78552 -10.65090 -10.38625 -10.37095 -10.20858 -10.19331 -10.01097 -9.47476 -9.21469 -8.40847 -7.95845 -7.82413 -6.40232 -3.80773 0.77201 1.31477 2.57169 2.79544 2.89262 3.19010 3.27593 3.33678 3.60532 3.83993 3.92568 4.15289 4.25219 4.31026 4.55994 4.62376 4.79695 4.87146 4.87665 5.02198 5.07563 5.22095 5.26292 5.43484 5.45785 5.47793 5.56138 5.64124 5.72649 5.79107 5.92581 6.03319 6.15736 6.29100 6.51705 6.56594 7.15698 7.27596 7.36457 7.56856 7.60970 7.64149 7.85273 8.08227 8.63700 9.20056 9.56267 10.08362 10.77547 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002070 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.557415 B =13521.871677 C =13944.161736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.574 6.574 12 C 0.046 3.954 13 N -0.504 5.504 14 C 0.057 3.943 15 C -0.118 4.118 16 C 0.153 3.847 17 H 0.097 0.903 18 N -0.700 5.700 19 C 0.596 3.404 20 O -0.523 6.523 21 C -0.027 4.027 22 C -0.185 4.185 23 C -0.060 4.060 24 O 0.122 5.878 25 N -0.330 5.330 26 C 0.107 3.893 27 H 0.062 0.938 28 O -0.547 6.547 29 C 0.024 3.976 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.023 0.977 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.412 0.588 39 H 0.182 0.818 40 H 0.225 0.775 41 H 0.380 0.620 42 H 0.083 0.917 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 -26.288 -1.895 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.085 4.085 13 N -0.229 5.229 14 C -0.071 4.071 15 C -0.157 4.157 16 C 0.048 3.952 17 H 0.115 0.885 18 N -0.351 5.351 19 C 0.380 3.620 20 O -0.398 6.398 21 C -0.187 4.187 22 C -0.207 4.207 23 C -0.141 4.141 24 O 0.046 5.954 25 N -0.030 5.030 26 C 0.047 3.953 27 H 0.080 0.920 28 O -0.353 6.353 29 C -0.105 4.105 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.041 0.959 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.199 0.801 40 H 0.242 0.758 41 H 0.228 0.772 42 H 0.101 0.899 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.338 -25.457 -1.489 26.535 hybrid contribution -1.184 0.530 -0.751 1.499 sum 6.153 -24.927 -2.240 25.772 Atomic orbital electron populations 1.69612 1.05918 1.28099 1.50792 1.25257 0.95638 0.99705 0.97422 0.85861 0.79249 0.80845 0.78357 1.20454 1.20964 1.19417 1.19693 0.93351 0.82199 1.47421 0.87923 1.41866 1.09157 1.04588 1.64594 1.19720 0.88432 0.84511 0.84421 1.90502 1.13636 1.86821 1.54843 1.21855 0.93895 0.91346 1.01445 1.61457 1.24706 1.00667 1.36035 1.22225 0.94938 1.01508 0.88465 1.21864 0.98968 0.92043 1.02795 1.21248 0.89050 0.88155 0.96701 0.88505 1.45851 1.40699 1.39214 1.09374 1.16906 0.80282 0.79869 0.84976 1.90816 1.60049 1.63892 1.25041 1.23643 1.02498 1.02507 0.90036 1.22804 0.98134 0.97614 1.02142 1.26077 1.02614 1.02845 0.82527 1.84810 1.42920 1.41183 1.26480 1.74210 1.02629 1.02715 1.23444 1.21990 0.90391 0.95785 0.87148 0.92045 1.86495 1.36626 1.94471 1.17659 1.22796 0.95316 0.90743 1.01683 0.91924 0.77541 0.93503 0.89399 0.87343 0.95877 0.89607 0.91404 0.75149 0.80092 0.75841 0.77195 0.89900 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.44 7.46 -10.99 -0.08 10.35 16 11 O -0.57 -15.47 13.92 5.54 0.08 -15.40 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 N -0.50 -8.22 4.28 -236.11 -1.01 -9.23 16 14 C 0.06 0.96 5.11 -3.84 -0.02 0.94 16 15 C -0.12 -1.81 5.51 -26.65 -0.15 -1.96 16 16 C 0.15 1.93 2.30 -67.81 -0.16 1.78 16 17 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 18 N -0.70 -8.45 5.05 -54.48 -0.27 -8.73 16 19 C 0.60 7.77 7.81 -12.11 -0.09 7.67 16 20 O -0.52 -8.16 16.62 5.37 0.09 -8.07 16 21 C -0.03 -0.30 7.19 -82.53 -0.59 -0.89 16 22 C -0.18 -1.43 10.99 -39.08 -0.43 -1.86 16 23 C -0.06 -0.30 12.28 29.69 0.36 0.07 16 24 O 0.12 0.96 11.18 17.25 0.19 1.15 16 25 N -0.33 -3.42 11.84 33.29 0.39 -3.03 16 26 C 0.11 1.16 3.42 -26.65 -0.09 1.07 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 O -0.55 -6.32 12.06 -35.23 -0.42 -6.75 16 29 C 0.02 0.28 5.12 -3.83 -0.02 0.26 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 1.37 7.98 -51.93 -0.41 0.96 16 34 H 0.11 2.25 5.80 -51.93 -0.30 1.95 16 35 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.09 1.49 7.80 -51.93 -0.40 1.08 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.41 4.68 7.88 -40.82 -0.32 4.36 16 39 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.23 -0.01 8.06 -52.48 -0.42 -0.43 16 41 H 0.38 3.07 9.08 45.56 0.41 3.48 16 42 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -35.07 366.29 -5.96 -41.03 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -4.63 Total: 15.31 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.54 Total: 10.24 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.22 Total: -59.24 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.07 Total: -29.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.07 -5.96 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099707138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.587 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds