Wall clock time and date at job start Tue Mar 31 2020 20:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48507 * 109.47174 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.47545 * 29.99591 * 3 2 1 6 6 H 1.48497 * 109.47464 * 150.00142 * 3 2 1 7 7 C 1.38950 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99906 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99983 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99740 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.46847 * 110.99825 * 293.95547 * 13 12 10 15 15 C 1.53034 * 109.52218 * 174.16306 * 14 13 12 16 16 C 1.53120 * 109.28048 * 59.17856 * 15 14 13 17 17 H 1.08999 * 109.52241 * 62.31535 * 16 15 14 18 18 N 1.46494 * 109.52464 * 182.43877 * 16 15 14 19 19 C 1.34781 * 120.00418 * 275.00218 * 18 16 15 20 20 O 1.21495 * 119.99664 * 359.97438 * 19 18 16 21 21 C 1.48329 * 120.00189 * 179.97438 * 19 18 16 22 22 C 1.42266 * 126.93737 * 179.97438 * 21 19 18 23 23 C 1.35312 * 103.92448 * 180.02562 * 22 21 19 24 24 O 1.34015 * 106.66911 * 0.02562 * 23 22 21 25 25 N 1.20913 * 111.84278 * 359.97438 * 24 23 22 26 26 C 1.53119 * 109.15898 * 302.34462 * 16 15 14 27 27 H 1.09007 * 109.50194 * 177.59401 * 26 16 15 28 28 O 1.42898 * 109.50579 * 297.71428 * 26 16 15 29 29 C 1.46850 * 111.00050 * 169.74577 * 13 12 10 30 30 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00141 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47006 * 59.99970 * 12 10 9 33 33 H 1.09001 * 109.47015 * 300.00363 * 12 10 9 34 34 H 1.08997 * 109.46408 * 54.14303 * 14 13 12 35 35 H 1.09007 * 109.45487 * 294.17332 * 14 13 12 36 36 H 1.08993 * 109.50188 * 299.23564 * 15 14 13 37 37 H 1.09001 * 109.53300 * 179.13517 * 15 14 13 38 38 H 0.97005 * 119.99884 * 94.99955 * 18 16 15 39 39 H 1.08001 * 128.04091 * 0.02562 * 22 21 19 40 40 H 1.08006 * 126.67147 * 180.02562 * 23 22 21 41 41 H 0.96693 * 114.00083 * 180.02562 * 28 26 16 42 42 H 1.09000 * 109.45951 * 305.85771 * 29 13 12 43 43 H 1.09007 * 109.46114 * 65.82708 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9794 0.0005 14 6 2.9636 -6.0182 -1.2523 15 6 4.0438 -7.0982 -1.1587 16 6 3.3817 -8.4545 -0.9010 17 1 2.7328 -8.7082 -1.7393 18 7 4.4142 -9.4831 -0.7525 19 6 4.9264 -10.0864 -1.8435 20 8 4.5314 -9.7775 -2.9501 21 6 5.9722 -11.1274 -1.6931 22 6 6.6107 -11.8547 -2.7358 23 6 7.4718 -12.6700 -2.0841 24 8 7.3250 -12.4176 -0.7762 25 7 6.4937 -11.5633 -0.5734 26 6 2.5523 -8.3729 0.3835 27 1 2.0440 -9.3228 0.5495 28 8 3.4121 -8.0913 1.4896 29 6 1.5153 -7.2560 0.2452 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6170 -4.9209 -0.8897 33 1 0.6176 -4.9204 0.8903 34 1 3.4327 -5.0490 -1.4215 35 1 2.2927 -6.2464 -2.0805 36 1 4.7231 -6.8633 -0.3393 37 1 4.6019 -7.1376 -2.0942 38 1 4.7293 -9.7299 0.1311 39 1 6.4463 -11.7748 -3.8003 40 1 8.1465 -13.3853 -2.5311 41 1 2.9529 -8.0258 2.3380 42 1 0.9324 -7.1857 1.1635 43 1 0.8512 -7.4784 -0.5902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099707138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:26 Heat of formation + Delta-G solvation = -71.966190 kcal Electronic energy + Delta-G solvation = -29067.147358 eV Core-core repulsion = 24729.002452 eV Total energy + Delta-G solvation = -4338.144906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.13444 -41.43582 -40.43185 -39.43014 -36.86941 -35.94260 -35.78637 -35.05790 -33.34648 -33.02161 -32.32855 -30.91594 -28.82705 -26.77233 -25.68253 -24.27192 -24.00921 -23.66877 -21.57512 -21.16242 -20.99311 -19.87752 -19.51557 -18.80533 -18.19281 -17.88066 -17.64803 -17.48904 -16.76746 -16.44209 -16.27177 -16.05400 -15.81960 -15.56957 -15.40263 -15.19755 -14.87573 -14.67471 -14.27744 -14.21858 -13.91997 -13.63529 -13.47046 -13.10604 -12.82308 -12.75474 -12.70644 -12.56384 -12.40984 -12.19188 -12.11514 -11.77405 -11.55204 -11.45836 -11.42381 -10.94196 -10.73521 -10.36177 -10.15545 -9.98217 -9.16792 -8.46305 -5.94412 0.04537 0.77426 1.36979 1.40530 1.53200 1.71890 1.97855 2.07139 2.27807 2.30971 2.68623 2.85220 3.20348 3.28897 3.36434 3.60912 3.69318 3.79429 3.93379 4.00712 4.06400 4.21525 4.26631 4.34484 4.42965 4.48182 4.54035 4.63428 4.66766 4.67993 4.71912 4.79350 4.97600 5.00160 5.19811 5.29283 5.41171 5.87375 6.06150 6.20307 6.22005 6.62046 6.82678 6.96839 7.05292 7.14272 7.58092 8.14860 8.71047 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002070 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.557415 B =13521.871677 C =13944.161736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.058 3.942 13 N -0.521 5.521 14 C 0.063 3.937 15 C -0.107 4.107 16 C 0.155 3.845 17 H 0.098 0.902 18 N -0.694 5.694 19 C 0.593 3.407 20 O -0.557 6.557 21 C -0.058 4.058 22 C -0.205 4.205 23 C -0.024 4.024 24 O 0.128 5.872 25 N -0.350 5.350 26 C 0.115 3.885 27 H 0.097 0.903 28 O -0.566 6.566 29 C 0.022 3.978 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.417 0.583 39 H 0.191 0.809 40 H 0.280 0.720 41 H 0.396 0.604 42 H 0.109 0.891 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 -28.504 -1.484 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.500 6.500 12 C -0.073 4.073 13 N -0.246 5.246 14 C -0.066 4.066 15 C -0.146 4.146 16 C 0.050 3.950 17 H 0.116 0.884 18 N -0.344 5.344 19 C 0.378 3.622 20 O -0.435 6.435 21 C -0.216 4.216 22 C -0.228 4.228 23 C -0.104 4.104 24 O 0.050 5.950 25 N -0.049 5.049 26 C 0.055 3.945 27 H 0.115 0.885 28 O -0.374 6.374 29 C -0.106 4.106 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.208 0.792 40 H 0.295 0.705 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.925 -27.685 -1.040 28.557 hybrid contribution -0.968 1.110 -0.888 1.720 sum 5.957 -26.575 -1.928 27.302 Atomic orbital electron populations 1.69667 1.06711 1.29197 1.50549 1.26007 0.96567 1.02303 0.96470 0.84954 0.77879 0.77085 0.78572 1.19764 1.19424 1.19956 1.19617 0.92576 0.84077 1.49722 0.90576 1.41929 1.09280 1.04658 1.65434 1.20848 0.88328 0.86036 0.82053 1.90485 1.15840 1.87753 1.55941 1.21739 0.93478 0.88384 1.03662 1.61383 1.25379 1.02439 1.35441 1.21998 0.95476 0.99496 0.89629 1.21674 0.98164 0.93682 1.01035 1.21183 0.89103 0.86449 0.98243 0.88427 1.45797 1.40467 1.38702 1.09471 1.17254 0.80358 0.80023 0.84540 1.90783 1.61355 1.65185 1.26127 1.23587 1.03171 1.03229 0.91607 1.23074 0.99051 0.98327 1.02384 1.26991 1.01164 1.01572 0.80683 1.84773 1.41900 1.40191 1.28110 1.74216 1.03462 1.03631 1.23611 1.22000 0.89628 0.96957 0.85933 0.88505 1.86470 1.37656 1.94598 1.18704 1.22990 0.95697 0.88345 1.03550 0.91352 0.77005 0.91563 0.86508 0.91974 0.94736 0.92110 0.92771 0.74657 0.79211 0.70506 0.75347 0.87246 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.58 -29.80 5.29 -306.99 -1.62 -31.42 16 10 C 0.44 21.17 7.46 87.66 0.65 21.82 16 11 O -0.61 -34.68 13.92 -3.08 -0.04 -34.72 16 12 C 0.06 1.98 5.45 85.56 0.47 2.45 16 13 N -0.52 -16.57 4.28 -900.92 -3.85 -20.42 16 14 C 0.06 2.18 5.11 86.32 0.44 2.62 16 15 C -0.11 -3.41 5.51 30.65 0.17 -3.25 16 16 C 0.15 3.85 2.30 45.07 0.10 3.95 16 17 H 0.10 2.45 7.58 -2.39 -0.02 2.43 16 18 N -0.69 -16.75 5.05 -444.57 -2.24 -18.99 16 19 C 0.59 15.75 7.81 86.93 0.68 16.43 16 20 O -0.56 -17.90 16.62 -3.70 -0.06 -17.96 16 21 C -0.06 -1.26 7.19 42.96 0.31 -0.95 16 22 C -0.21 -2.90 10.99 22.60 0.25 -2.65 16 23 C -0.02 -0.16 12.28 67.14 0.82 0.66 16 24 O 0.13 1.74 11.18 71.88 0.80 2.55 16 25 N -0.35 -6.98 11.84 -49.52 -0.59 -7.57 16 26 C 0.11 2.23 3.42 30.65 0.10 2.33 16 27 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 28 O -0.57 -12.19 12.06 -148.98 -1.80 -13.98 16 29 C 0.02 0.46 5.12 86.32 0.44 0.91 16 30 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 32 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 33 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 34 H 0.06 2.75 5.80 -2.39 -0.01 2.74 16 35 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 2.23 7.80 -2.39 -0.02 2.21 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.42 9.37 7.88 -92.70 -0.73 8.64 16 39 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.28 -1.51 8.06 -2.91 -0.02 -1.54 16 41 H 0.40 5.48 9.08 -74.06 -0.67 4.81 16 42 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 43 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -80.90 366.29 -2.41 -83.31 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -1.04 Total: 37.37 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 5.72 Total: 25.83 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -8.02 Total: -128.15 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -1.10 Total: -64.12 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -80.90 -2.41 -83.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099707138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.340 kcal (2) G-P(sol) polarization free energy of solvation -80.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds