Wall clock time and date at job start Tue Mar 31 2020 20:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99463 * 3 2 1 5 5 H 1.48492 * 109.47428 * 29.99682 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99974 * 3 2 1 7 7 C 1.38943 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99662 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00340 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47292 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99897 * 66.04550 * 13 12 10 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 H 1.09001 * 109.52470 * 62.23762 * 16 15 14 18 18 N 1.46494 * 109.52641 * 182.43578 * 16 15 14 19 19 C 1.34774 * 120.00119 * 274.67066 * 18 16 15 20 20 O 1.21494 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.48331 * 119.99982 * 180.02562 * 19 18 16 22 22 C 1.42278 * 126.93539 * 179.71535 * 21 19 18 23 23 C 1.35312 * 103.92140 * 179.91309 * 22 21 19 24 24 O 1.34019 * 106.66545 * 0.34819 * 23 22 21 25 25 N 1.20900 * 111.84963 * 359.76144 * 24 23 22 26 26 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 27 27 H 1.08994 * 109.50076 * 297.71308 * 26 16 15 28 28 O 1.42900 * 109.53183 * 177.61254 * 26 16 15 29 29 C 1.46854 * 110.99958 * 301.83688 * 13 12 10 30 30 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99954 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46720 * 60.00004 * 12 10 9 33 33 H 1.08995 * 109.47124 * 300.00478 * 12 10 9 34 34 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 35 35 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 36 36 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 37 37 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 38 38 H 0.97008 * 120.00055 * 94.67992 * 18 16 15 39 39 H 1.07999 * 128.03782 * 0.02770 * 22 21 19 40 40 H 1.07999 * 126.66849 * 180.08286 * 23 22 21 41 41 H 0.96700 * 113.99864 * 180.17916 * 28 26 16 42 42 H 1.08993 * 109.46229 * 305.85774 * 29 13 12 43 43 H 1.09008 * 109.45803 * 65.83386 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0022 12 6 1.2439 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0037 14 6 2.9635 -6.0172 1.2566 15 6 3.8399 -7.2714 1.2829 16 6 4.7908 -7.2494 0.0832 17 1 5.4491 -6.3837 0.1561 18 7 5.5920 -8.4757 0.0709 19 6 6.7262 -8.5470 0.7955 20 8 7.0838 -7.5943 1.4592 21 6 7.5377 -9.7886 0.7825 22 6 8.7543 -10.0221 1.4824 23 6 9.0864 -11.2895 1.1440 24 8 8.1318 -11.7277 0.3116 25 7 7.2822 -10.8892 0.1200 26 6 3.9703 -7.1611 -1.2066 27 1 3.3405 -8.0460 -1.2985 28 8 4.8514 -7.0840 -2.3290 29 6 3.0901 -5.9100 -1.1610 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0016 32 1 0.6176 -4.9212 -0.8870 33 1 0.6168 -4.9201 0.8929 34 1 3.5951 -5.1313 1.3233 35 1 2.2755 -6.0371 2.1018 36 1 4.4193 -7.2913 2.2059 37 1 3.2080 -8.1581 1.2302 38 1 5.3063 -9.2365 -0.4589 39 1 9.2876 -9.3457 2.1339 40 1 9.9544 -11.8394 1.4764 41 1 4.3984 -7.0229 -3.1812 42 1 2.4941 -5.8518 -2.0717 43 1 3.7213 -5.0247 -1.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099707139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:31 Heat of formation + Delta-G solvation = -42.579973 kcal Electronic energy + Delta-G solvation = -29368.131148 eV Core-core repulsion = 25031.260523 eV Total energy + Delta-G solvation = -4336.870624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.41894 -40.29945 -39.21241 -37.79307 -35.85399 -34.85260 -34.30741 -33.86447 -32.29904 -31.50496 -31.11346 -29.51020 -27.30391 -25.34686 -24.27819 -23.32453 -23.06480 -22.33174 -20.64432 -20.13239 -19.32305 -18.72041 -18.07701 -17.92463 -17.27479 -17.06710 -16.49608 -16.08140 -15.25628 -15.20243 -14.91798 -14.72497 -14.55523 -14.07780 -14.01858 -13.81524 -13.74278 -13.55871 -13.38482 -12.86228 -12.53131 -12.21617 -12.04805 -11.94623 -11.54078 -11.29675 -11.22248 -11.00026 -10.79906 -10.73747 -10.57480 -10.44760 -10.30805 -10.22992 -10.14049 -9.92450 -9.50328 -9.29455 -9.17487 -8.04391 -7.50519 -6.49430 -3.90787 0.83456 1.38138 2.65334 2.86766 3.00043 3.12206 3.22435 3.28476 3.67651 3.76791 3.95129 4.11881 4.27136 4.38332 4.68095 4.78152 4.93015 4.94860 5.07112 5.10438 5.14036 5.21873 5.35592 5.43357 5.50938 5.58807 5.72384 5.84982 5.94775 6.01861 6.07012 6.13390 6.16618 6.33682 6.51385 6.65757 7.19160 7.23830 7.28837 7.47934 7.64700 7.67358 7.96074 7.96897 8.51058 9.09030 9.44264 9.94598 10.66947 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.002259 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.119138 B =12393.755381 C =12873.384027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.403 3.597 11 O -0.592 6.592 12 C 0.042 3.958 13 N -0.511 5.511 14 C 0.042 3.958 15 C -0.119 4.119 16 C 0.155 3.845 17 H 0.100 0.900 18 N -0.700 5.700 19 C 0.596 3.404 20 O -0.519 6.519 21 C -0.024 4.024 22 C -0.184 4.184 23 C -0.061 4.061 24 O 0.120 5.880 25 N -0.332 5.332 26 C 0.106 3.894 27 H 0.062 0.938 28 O -0.562 6.562 29 C 0.004 3.996 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.405 0.595 39 H 0.182 0.818 40 H 0.225 0.775 41 H 0.379 0.621 42 H 0.070 0.930 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -22.514 0.286 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.189 3.811 11 O -0.480 6.480 12 C -0.090 4.090 13 N -0.235 5.235 14 C -0.087 4.087 15 C -0.158 4.158 16 C 0.051 3.949 17 H 0.118 0.882 18 N -0.350 5.350 19 C 0.380 3.620 20 O -0.393 6.393 21 C -0.184 4.184 22 C -0.207 4.207 23 C -0.142 4.142 24 O 0.045 5.955 25 N -0.033 5.033 26 C 0.047 3.953 27 H 0.080 0.920 28 O -0.367 6.367 29 C -0.124 4.124 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.240 0.760 39 H 0.199 0.801 40 H 0.241 0.759 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.607 -22.423 0.376 24.397 hybrid contribution 0.153 1.721 -0.090 1.731 sum 9.760 -20.701 0.286 22.888 Atomic orbital electron populations 1.69608 1.05963 1.28357 1.49897 1.25296 0.95640 0.99868 0.96998 0.85857 0.79294 0.80710 0.78463 1.20332 1.20830 1.19371 1.19722 0.93421 0.82346 1.47739 0.87913 1.42048 1.09315 1.04931 1.62602 1.21073 0.88844 0.85976 0.85251 1.90412 1.13858 1.86767 1.56919 1.22032 0.95232 0.88021 1.03665 1.62436 1.17881 1.40676 1.02538 1.22225 0.96709 0.97899 0.91841 1.21904 0.97109 0.99273 0.97465 1.21142 0.92513 0.87430 0.93833 0.88154 1.45808 1.23519 1.17825 1.47819 1.16868 0.80312 0.84648 0.80214 1.90839 1.70279 1.36220 1.41935 1.23688 0.98475 0.95442 1.00776 1.22822 0.96425 0.97305 1.04102 1.26060 0.96520 0.95923 0.95657 1.84794 1.25655 1.35716 1.49363 1.74175 1.10945 0.99468 1.18725 1.21973 0.89998 0.97845 0.85521 0.92049 1.86541 1.36401 1.97050 1.16722 1.23071 0.96337 0.99276 0.93753 0.91729 0.77357 0.89188 0.89086 0.90772 0.90831 0.90554 0.91172 0.76047 0.80081 0.75870 0.77381 0.91136 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 10 C 0.40 8.98 7.20 -10.98 -0.08 8.90 16 11 O -0.59 -14.93 11.20 5.54 0.06 -14.86 16 12 C 0.04 0.71 5.86 -4.98 -0.03 0.68 16 13 N -0.51 -8.06 4.86 -236.11 -1.15 -9.20 16 14 C 0.04 0.67 5.10 -3.84 -0.02 0.65 16 15 C -0.12 -1.66 5.67 -26.66 -0.15 -1.81 16 16 C 0.15 2.29 2.20 -67.82 -0.15 2.14 16 17 H 0.10 1.85 7.58 -51.93 -0.39 1.45 16 18 N -0.70 -9.26 4.99 -54.49 -0.27 -9.54 16 19 C 0.60 8.63 7.82 -12.11 -0.09 8.54 16 20 O -0.52 -9.17 16.61 5.37 0.09 -9.08 16 21 C -0.02 -0.29 7.19 -82.53 -0.59 -0.88 16 22 C -0.18 -1.59 10.99 -39.07 -0.43 -2.01 16 23 C -0.06 -0.34 12.28 29.69 0.36 0.03 16 24 O 0.12 0.99 11.18 17.24 0.19 1.18 16 25 N -0.33 -3.59 11.84 33.29 0.39 -3.20 16 26 C 0.11 1.44 3.14 -26.65 -0.08 1.36 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 O -0.56 -7.46 13.24 -35.23 -0.47 -7.93 16 29 C 0.00 0.07 4.60 -3.83 -0.02 0.05 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 34 H 0.07 1.48 6.00 -51.93 -0.31 1.17 16 35 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.40 4.66 8.37 -40.82 -0.34 4.32 16 39 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.22 0.10 8.06 -52.49 -0.42 -0.32 16 41 H 0.38 3.43 9.08 45.56 0.41 3.84 16 42 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.10 1.99 5.36 -51.92 -0.28 1.72 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -33.83 363.03 -6.10 -39.92 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -4.54 Total: 18.50 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -1.52 Total: 9.76 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.36 Total: -58.87 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.12 Total: -30.69 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.83 -6.10 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099707139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.655 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds