Wall clock time and date at job start Tue Mar 31 2020 20:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99463 * 3 2 1 5 5 H 1.48492 * 109.47428 * 29.99682 * 3 2 1 6 6 H 1.48498 * 109.46975 * 149.99974 * 3 2 1 7 7 C 1.38943 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99662 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00340 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47292 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99897 * 66.04550 * 13 12 10 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 H 1.09001 * 109.52470 * 62.23762 * 16 15 14 18 18 N 1.46494 * 109.52641 * 182.43578 * 16 15 14 19 19 C 1.34774 * 120.00119 * 274.67066 * 18 16 15 20 20 O 1.21494 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.48331 * 119.99982 * 180.02562 * 19 18 16 22 22 C 1.42278 * 126.93539 * 179.71535 * 21 19 18 23 23 C 1.35312 * 103.92140 * 179.91309 * 22 21 19 24 24 O 1.34019 * 106.66545 * 0.34819 * 23 22 21 25 25 N 1.20900 * 111.84963 * 359.76144 * 24 23 22 26 26 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 27 27 H 1.08994 * 109.50076 * 297.71308 * 26 16 15 28 28 O 1.42900 * 109.53183 * 177.61254 * 26 16 15 29 29 C 1.46854 * 110.99958 * 301.83688 * 13 12 10 30 30 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99954 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46720 * 60.00004 * 12 10 9 33 33 H 1.08995 * 109.47124 * 300.00478 * 12 10 9 34 34 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 35 35 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 36 36 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 37 37 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 38 38 H 0.97008 * 120.00055 * 94.67992 * 18 16 15 39 39 H 1.07999 * 128.03782 * 0.02770 * 22 21 19 40 40 H 1.07999 * 126.66849 * 180.08286 * 23 22 21 41 41 H 0.96700 * 113.99864 * 180.17916 * 28 26 16 42 42 H 1.08993 * 109.46229 * 305.85774 * 29 13 12 43 43 H 1.09008 * 109.45803 * 65.83386 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0022 12 6 1.2439 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0037 14 6 2.9635 -6.0172 1.2566 15 6 3.8399 -7.2714 1.2829 16 6 4.7908 -7.2494 0.0832 17 1 5.4491 -6.3837 0.1561 18 7 5.5920 -8.4757 0.0709 19 6 6.7262 -8.5470 0.7955 20 8 7.0838 -7.5943 1.4592 21 6 7.5377 -9.7886 0.7825 22 6 8.7543 -10.0221 1.4824 23 6 9.0864 -11.2895 1.1440 24 8 8.1318 -11.7277 0.3116 25 7 7.2822 -10.8892 0.1200 26 6 3.9703 -7.1611 -1.2066 27 1 3.3405 -8.0460 -1.2985 28 8 4.8514 -7.0840 -2.3290 29 6 3.0901 -5.9100 -1.1610 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0016 32 1 0.6176 -4.9212 -0.8870 33 1 0.6168 -4.9201 0.8929 34 1 3.5951 -5.1313 1.3233 35 1 2.2755 -6.0371 2.1018 36 1 4.4193 -7.2913 2.2059 37 1 3.2080 -8.1581 1.2302 38 1 5.3063 -9.2365 -0.4589 39 1 9.2876 -9.3457 2.1339 40 1 9.9544 -11.8394 1.4764 41 1 4.3984 -7.0229 -3.1812 42 1 2.4941 -5.8518 -2.0717 43 1 3.7213 -5.0247 -1.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099707139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:30 Heat of formation + Delta-G solvation = -73.751694 kcal Electronic energy + Delta-G solvation = -29369.482855 eV Core-core repulsion = 25031.260523 eV Total energy + Delta-G solvation = -4338.222332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.14252 -41.56026 -40.65205 -39.25059 -37.16356 -36.17500 -35.70054 -35.05897 -33.40802 -33.05880 -32.35990 -30.75564 -28.77371 -26.81093 -25.67494 -24.29781 -23.99082 -23.59166 -21.69687 -21.40433 -20.98882 -19.91674 -19.51469 -18.81003 -18.38915 -18.04706 -17.77144 -17.63684 -16.72709 -16.52276 -16.32205 -16.05141 -15.80998 -15.66702 -15.34387 -15.17476 -15.00724 -14.73541 -14.24899 -14.10677 -13.84922 -13.61155 -13.53007 -13.28728 -12.99685 -12.78541 -12.54339 -12.46993 -12.28668 -12.18682 -12.17197 -11.78789 -11.56513 -11.50177 -11.39713 -11.02222 -10.99482 -10.73801 -10.34145 -10.02100 -9.10667 -8.49863 -5.99300 0.03907 0.76855 1.32474 1.37440 1.49476 1.69491 1.97152 1.98425 2.25756 2.29888 2.75379 2.82237 3.12899 3.16376 3.23345 3.59138 3.67374 3.92132 3.94605 3.99380 4.10240 4.22644 4.30629 4.36570 4.36688 4.42873 4.63831 4.65312 4.65791 4.78849 4.81235 4.88912 4.96764 5.11372 5.15147 5.29007 5.38620 5.80059 5.93719 5.98795 6.19193 6.55618 6.77522 6.85291 7.04200 7.08789 7.51878 8.07745 8.65457 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.002259 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.119138 B =12393.755381 C =12873.384027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.333 4.333 8 H 0.074 0.926 9 N -0.568 5.568 10 C 0.404 3.596 11 O -0.623 6.623 12 C 0.050 3.950 13 N -0.492 5.492 14 C 0.044 3.956 15 C -0.106 4.106 16 C 0.156 3.844 17 H 0.052 0.948 18 N -0.689 5.689 19 C 0.592 3.408 20 O -0.563 6.563 21 C -0.056 4.056 22 C -0.208 4.208 23 C -0.021 4.021 24 O 0.132 5.868 25 N -0.346 5.346 26 C 0.120 3.880 27 H 0.095 0.905 28 O -0.577 6.577 29 C 0.006 3.994 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.187 0.813 40 H 0.281 0.719 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -25.323 -0.086 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.092 0.908 9 N -0.204 5.204 10 C 0.191 3.809 11 O -0.512 6.512 12 C -0.081 4.081 13 N -0.215 5.215 14 C -0.085 4.085 15 C -0.145 4.145 16 C 0.051 3.949 17 H 0.070 0.930 18 N -0.339 5.339 19 C 0.377 3.623 20 O -0.441 6.441 21 C -0.214 4.214 22 C -0.231 4.231 23 C -0.101 4.101 24 O 0.053 5.947 25 N -0.045 5.045 26 C 0.060 3.940 27 H 0.113 0.887 28 O -0.385 6.385 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.253 0.747 39 H 0.205 0.795 40 H 0.296 0.704 41 H 0.249 0.751 42 H 0.108 0.892 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.361 -25.256 -0.037 26.935 hybrid contribution 0.341 2.456 0.007 2.479 sum 9.702 -22.800 -0.030 24.779 Atomic orbital electron populations 1.69656 1.06647 1.29327 1.49997 1.25987 0.96534 1.02280 0.96278 0.84996 0.77831 0.77273 0.78658 1.19603 1.19325 1.20247 1.19594 0.92503 0.84295 1.49918 0.90804 1.42104 1.09409 1.04895 1.64023 1.22232 0.88755 0.87285 0.82611 1.90446 1.15834 1.87606 1.57281 1.22175 0.95150 0.84643 1.06163 1.62542 1.17438 1.39202 1.02311 1.22187 0.96633 0.96969 0.92709 1.21788 0.96753 0.99232 0.96747 1.20970 0.92106 0.86507 0.95299 0.92956 1.45676 1.23170 1.17477 1.47599 1.17302 0.80411 0.85206 0.79366 1.90806 1.71365 1.38102 1.43812 1.23494 0.99811 0.94931 1.03117 1.23070 0.95914 0.99114 1.05040 1.26967 0.96013 0.94603 0.92491 1.84762 1.25712 1.34933 1.49291 1.74177 1.12000 0.99339 1.18987 1.21842 0.89487 0.97708 0.84981 0.88733 1.86512 1.37161 1.97009 1.17783 1.23030 0.96158 0.98570 0.94525 0.91220 0.76863 0.86399 0.86632 0.95435 0.89168 0.91466 0.88340 0.74743 0.79548 0.70362 0.75123 0.89190 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.07 4.53 7.16 -2.91 -0.02 4.51 16 9 N -0.57 -28.55 5.29 -306.98 -1.62 -30.17 16 10 C 0.40 18.45 7.20 87.66 0.63 19.08 16 11 O -0.62 -33.21 11.20 -3.08 -0.03 -33.24 16 12 C 0.05 1.62 5.86 85.56 0.50 2.12 16 13 N -0.49 -14.91 4.86 -900.92 -4.38 -19.28 16 14 C 0.04 1.42 5.10 86.32 0.44 1.86 16 15 C -0.11 -2.98 5.67 30.64 0.17 -2.81 16 16 C 0.16 4.75 2.20 45.07 0.10 4.85 16 17 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 18 N -0.69 -18.45 4.99 -444.60 -2.22 -20.67 16 19 C 0.59 17.83 7.82 86.93 0.68 18.51 16 20 O -0.56 -21.36 16.61 -3.70 -0.06 -21.42 16 21 C -0.06 -1.31 7.19 42.96 0.31 -1.00 16 22 C -0.21 -3.32 10.99 22.60 0.25 -3.07 16 23 C -0.02 -0.16 12.28 67.14 0.82 0.67 16 24 O 0.13 1.80 11.18 71.86 0.80 2.60 16 25 N -0.35 -7.00 11.84 -49.52 -0.59 -7.59 16 26 C 0.12 3.13 3.14 30.65 0.10 3.22 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 O -0.58 -14.96 13.24 -148.98 -1.97 -16.94 16 29 C 0.01 0.19 4.60 86.32 0.40 0.59 16 30 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 32 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.12 3.25 8.06 -2.39 -0.02 3.23 16 34 H 0.03 1.17 6.00 -2.39 -0.01 1.15 16 35 H 0.09 2.60 8.06 -2.39 -0.02 2.58 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.42 9.21 8.37 -92.70 -0.78 8.43 16 39 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.28 -1.37 8.06 -2.91 -0.02 -1.39 16 41 H 0.40 6.60 9.08 -74.06 -0.67 5.93 16 42 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 43 H 0.05 2.11 5.36 -2.38 -0.01 2.09 16 Total: -1.00 -79.66 363.03 -3.16 -82.81 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -1.08 Total: 41.39 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 5.68 Total: 25.84 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -8.52 Total: -126.52 kcal Atomic # 8 Polarization: -67.73 SS G_CDS: -1.26 Total: -69.00 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -79.66 -3.16 -82.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099707139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.063 kcal (2) G-P(sol) polarization free energy of solvation -79.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds