Wall clock time and date at job start Tue Mar 31 2020 20:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48502 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47223 * 299.99431 * 3 2 1 6 6 H 1.48492 * 109.47385 * 59.99639 * 3 2 1 7 7 C 1.38943 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99662 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00340 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47292 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99897 * 66.04550 * 13 12 10 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 H 1.09001 * 109.52470 * 62.23762 * 16 15 14 18 18 N 1.46494 * 109.52641 * 182.43578 * 16 15 14 19 19 C 1.34774 * 120.00119 * 274.67066 * 18 16 15 20 20 O 1.21611 * 119.99906 * 0.02562 * 19 18 16 21 21 C 1.47417 * 120.00236 * 180.02562 * 19 18 16 22 22 C 1.36092 * 126.45134 * 179.72081 * 21 19 18 23 23 O 1.34258 * 106.95042 * 179.90210 * 22 21 19 24 24 C 1.34045 * 108.22863 * 0.36062 * 23 22 21 25 25 N 1.29938 * 109.24188 * 359.77108 * 24 23 22 26 26 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 27 27 H 1.08994 * 109.50076 * 297.71308 * 26 16 15 28 28 O 1.42900 * 109.53183 * 177.61254 * 26 16 15 29 29 C 1.46854 * 110.99958 * 301.83688 * 13 12 10 30 30 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99954 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46720 * 60.00004 * 12 10 9 33 33 H 1.08995 * 109.47124 * 300.00478 * 12 10 9 34 34 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 35 35 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 36 36 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 37 37 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 38 38 H 0.97008 * 120.00055 * 94.67992 * 18 16 15 39 39 H 1.08001 * 126.52299 * 0.02786 * 22 21 19 40 40 H 1.07999 * 125.38245 * 179.80574 * 24 23 22 41 41 H 0.96700 * 113.99864 * 180.17916 * 28 26 16 42 42 H 1.08993 * 109.46229 * 305.85774 * 29 13 12 43 43 H 1.09008 * 109.45803 * 65.83386 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0022 12 6 1.2439 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0037 14 6 2.9635 -6.0172 1.2566 15 6 3.8399 -7.2714 1.2829 16 6 4.7908 -7.2494 0.0832 17 1 5.4491 -6.3837 0.1561 18 7 5.5920 -8.4757 0.0709 19 6 6.7262 -8.5470 0.7955 20 8 7.0842 -7.5934 1.4599 21 6 7.5328 -9.7809 0.7826 22 6 8.6959 -9.9936 1.4565 23 8 9.0921 -11.2436 1.1684 24 6 8.1971 -11.7845 0.3299 25 7 7.2576 -10.9194 0.0902 26 6 3.9703 -7.1611 -1.2066 27 1 3.3405 -8.0460 -1.2985 28 8 4.8514 -7.0840 -2.3290 29 6 3.0901 -5.9100 -1.1610 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0016 32 1 0.6176 -4.9212 -0.8870 33 1 0.6168 -4.9201 0.8929 34 1 3.5951 -5.1313 1.3233 35 1 2.2755 -6.0371 2.1018 36 1 4.4193 -7.2913 2.2059 37 1 3.2080 -8.1581 1.2302 38 1 5.3063 -9.2365 -0.4589 39 1 9.2025 -9.2914 2.1019 40 1 8.2483 -12.7819 -0.0812 41 1 4.3984 -7.0229 -3.1812 42 1 2.4941 -5.8518 -2.0717 43 1 3.7213 -5.0247 -1.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099739088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:50 Heat of formation + Delta-G solvation = -117.700710 kcal Electronic energy + Delta-G solvation = -29344.071055 eV Core-core repulsion = 25003.942951 eV Total energy + Delta-G solvation = -4340.128104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39188 -41.47288 -40.54462 -39.18675 -37.13003 -36.12032 -35.89975 -35.55485 -33.38157 -32.64915 -31.33167 -30.71081 -28.68152 -26.65583 -25.31057 -24.21004 -23.76035 -23.32633 -21.67156 -21.39133 -20.98268 -19.90991 -19.46709 -18.34145 -17.88523 -17.71593 -17.59774 -17.52636 -16.70777 -16.47167 -16.32197 -15.92399 -15.91819 -15.68598 -15.45653 -15.16759 -15.00165 -14.89463 -14.47943 -14.06696 -13.80644 -13.59686 -13.49654 -13.26448 -12.98598 -12.50758 -12.44812 -12.43274 -12.25479 -12.16533 -12.14207 -11.88770 -11.69272 -11.48284 -11.30193 -10.99605 -10.95551 -10.36030 -10.07408 -10.00951 -9.08569 -8.49173 -5.98520 0.08082 1.06767 1.31769 1.38064 1.51486 1.69138 1.99451 2.04581 2.20282 2.26488 2.78658 3.06129 3.16670 3.19463 3.24792 3.65766 3.79949 3.87833 3.98143 3.98716 4.13906 4.34795 4.38137 4.40112 4.46236 4.52605 4.63538 4.66547 4.68651 4.83306 4.84572 4.92920 5.15192 5.18612 5.23788 5.35003 5.40645 5.82301 5.96397 6.00312 6.26069 6.56589 6.58129 6.81818 7.04742 7.09819 7.52941 8.08879 8.66374 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.002257 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.451447 B =12402.089123 C =12887.844478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.074 0.926 9 N -0.568 5.568 10 C 0.404 3.596 11 O -0.623 6.623 12 C 0.050 3.950 13 N -0.491 5.491 14 C 0.044 3.956 15 C -0.106 4.106 16 C 0.156 3.844 17 H 0.050 0.950 18 N -0.687 5.687 19 C 0.594 3.406 20 O -0.578 6.578 21 C -0.103 4.103 22 C 0.028 3.972 23 O -0.197 6.197 24 C 0.201 3.799 25 N -0.496 5.496 26 C 0.120 3.880 27 H 0.094 0.906 28 O -0.576 6.576 29 C 0.006 3.994 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.417 0.583 39 H 0.247 0.753 40 H 0.305 0.695 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 -25.900 -1.068 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.092 0.908 9 N -0.205 5.205 10 C 0.192 3.808 11 O -0.511 6.511 12 C -0.082 4.082 13 N -0.215 5.215 14 C -0.085 4.085 15 C -0.144 4.144 16 C 0.051 3.949 17 H 0.068 0.932 18 N -0.337 5.337 19 C 0.381 3.619 20 O -0.458 6.458 21 C -0.221 4.221 22 C -0.047 4.047 23 O -0.082 6.082 24 C -0.028 4.028 25 N -0.225 5.225 26 C 0.060 3.940 27 H 0.112 0.888 28 O -0.384 6.384 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.254 0.746 39 H 0.263 0.737 40 H 0.320 0.680 41 H 0.248 0.752 42 H 0.107 0.893 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.810 -25.666 -0.596 27.142 hybrid contribution 0.305 2.061 -0.178 2.091 sum 9.115 -23.605 -0.775 25.316 Atomic orbital electron populations 1.69663 1.06648 1.29247 1.50136 1.25986 0.96530 1.02276 0.96319 0.84938 0.77873 0.77484 0.78452 1.20287 1.19412 1.19538 1.19628 0.92489 0.84291 1.49770 0.90821 1.42113 1.09409 1.04904 1.64090 1.22241 0.88756 0.87285 0.82547 1.90448 1.15837 1.87607 1.57219 1.22178 0.95177 0.84664 1.06133 1.62542 1.17451 1.39138 1.02338 1.22189 0.96619 0.97054 0.92646 1.21778 0.96745 0.99060 0.96855 1.20914 0.92088 0.86808 0.95056 0.93192 1.45588 1.23213 1.17158 1.47697 1.17183 0.80468 0.85201 0.79025 1.90830 1.71864 1.38538 1.44558 1.21562 0.99505 0.95448 1.05625 1.25646 0.94913 0.84754 0.99345 1.84499 1.47292 1.24635 1.51761 1.29288 0.82254 1.01431 0.89793 1.70716 1.28135 1.00635 1.23056 1.21835 0.89503 0.97546 0.85080 0.88821 1.86518 1.37139 1.97000 1.17741 1.23032 0.96146 0.98651 0.94457 0.91240 0.76871 0.86419 0.86656 0.95493 0.89269 0.91513 0.88447 0.74572 0.73739 0.67989 0.75230 0.89287 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 2 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 8 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -28.65 5.29 -306.98 -1.62 -30.27 16 10 C 0.40 18.52 7.20 87.66 0.63 19.15 16 11 O -0.62 -33.28 11.20 -3.08 -0.03 -33.32 16 12 C 0.05 1.62 5.86 85.56 0.50 2.13 16 13 N -0.49 -14.98 4.86 -900.92 -4.38 -19.36 16 14 C 0.04 1.42 5.10 86.32 0.44 1.86 16 15 C -0.11 -2.97 5.67 30.64 0.17 -2.80 16 16 C 0.16 4.78 2.20 45.07 0.10 4.88 16 17 H 0.05 2.02 7.58 -2.39 -0.02 2.01 16 18 N -0.69 -18.38 4.99 -445.46 -2.22 -20.60 16 19 C 0.59 17.56 7.78 86.66 0.67 18.23 16 20 O -0.58 -21.34 16.55 -4.07 -0.07 -21.41 16 21 C -0.10 -2.33 6.99 40.41 0.28 -2.04 16 22 C 0.03 0.47 11.95 67.32 0.80 1.27 16 23 O -0.20 -2.43 10.73 0.42 0.00 -2.43 16 24 C 0.20 1.91 13.19 130.52 1.72 3.63 16 25 N -0.50 -8.96 11.06 -305.15 -3.37 -12.33 16 26 C 0.12 3.16 3.14 30.65 0.10 3.26 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 O -0.58 -15.05 13.24 -148.98 -1.97 -17.02 16 29 C 0.01 0.19 4.60 86.32 0.40 0.59 16 30 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 32 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.12 3.26 8.06 -2.39 -0.02 3.24 16 34 H 0.03 1.15 6.00 -2.39 -0.01 1.13 16 35 H 0.09 2.59 8.06 -2.39 -0.02 2.57 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.42 9.37 8.33 -92.70 -0.77 8.59 16 39 H 0.25 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.31 -0.89 8.06 -2.91 -0.02 -0.91 16 41 H 0.40 6.65 9.08 -74.06 -0.67 5.98 16 42 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 43 H 0.05 2.08 5.36 -2.38 -0.01 2.07 16 Total: -1.00 -80.54 363.34 -5.33 -85.87 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -1.08 Total: 42.22 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 7.10 Total: 31.99 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -11.31 Total: -131.46 kcal Atomic # 8 Polarization: -72.10 SS G_CDS: -2.07 Total: -74.17 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.54 -5.33 -85.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099739088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.835 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds