Wall clock time and date at job start Tue Mar 31 2020 20:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48491 * 109.47194 * 269.99662 * 3 2 1 5 5 H 1.48505 * 109.46952 * 29.99726 * 3 2 1 6 6 H 1.48501 * 109.47029 * 149.99708 * 3 2 1 7 7 C 1.38953 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99669 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99791 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00077 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99664 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.47035 * 180.02562 * 12 10 9 14 14 C 1.46842 * 110.99676 * 293.95450 * 13 12 10 15 15 C 1.53036 * 109.52190 * 185.84074 * 14 13 12 16 16 C 1.53123 * 109.27788 * 300.81892 * 15 14 13 17 17 H 1.09007 * 109.52268 * 297.75177 * 16 15 14 18 18 N 1.46494 * 109.52595 * 177.56028 * 16 15 14 19 19 C 1.34780 * 120.00168 * 84.99623 * 18 16 15 20 20 O 1.21612 * 119.99880 * 0.02562 * 19 18 16 21 21 C 1.47415 * 120.00247 * 180.02562 * 19 18 16 22 22 C 1.36088 * 126.45139 * 179.71419 * 21 19 18 23 23 O 1.34254 * 106.95263 * 179.90242 * 22 21 19 24 24 C 1.34053 * 108.22784 * 0.36590 * 23 22 21 25 25 N 1.29938 * 109.23774 * 359.77186 * 24 23 22 26 26 C 1.53123 * 109.16001 * 57.65365 * 16 15 14 27 27 H 1.08998 * 109.53365 * 62.30832 * 26 16 15 28 28 O 1.42898 * 109.50169 * 182.40396 * 26 16 15 29 29 C 1.46848 * 110.99958 * 58.16512 * 13 12 10 30 30 H 0.97006 * 120.00261 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99796 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47344 * 60.00190 * 12 10 9 33 33 H 1.09004 * 109.47269 * 299.99671 * 12 10 9 34 34 H 1.09002 * 109.46766 * 65.82407 * 14 13 12 35 35 H 1.09000 * 109.45508 * 305.84586 * 14 13 12 36 36 H 1.09000 * 109.50632 * 60.76184 * 15 14 13 37 37 H 1.09006 * 109.50216 * 180.87978 * 15 14 13 38 38 H 0.97003 * 120.00558 * 265.00797 * 18 16 15 39 39 H 1.07999 * 126.52413 * 0.03619 * 22 21 19 40 40 H 1.07998 * 125.38050 * 179.79890 * 24 23 22 41 41 H 0.96698 * 113.99767 * 179.80230 * 28 26 16 42 42 H 1.09003 * 109.46014 * 294.17985 * 29 13 12 43 43 H 1.08995 * 109.46374 * 54.14015 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 2.9644 -6.0177 -1.2515 15 6 3.8407 -7.2721 -1.2769 16 6 4.7907 -7.2495 -0.0762 17 1 5.4491 -6.3838 -0.1489 18 7 5.5919 -8.4758 -0.0626 19 6 6.7233 -8.5497 -0.7915 20 8 7.0792 -7.5982 -1.4600 21 6 7.5293 -9.7839 -0.7783 22 6 8.6839 -10.0029 -1.4644 23 8 9.0853 -11.2492 -1.1675 24 6 8.1931 -11.7874 -0.3241 25 7 7.2556 -10.9207 -0.0824 26 6 3.9692 -7.1606 1.2130 27 1 3.3393 -8.0454 1.3054 28 8 4.8500 -7.0826 2.3355 29 6 3.0891 -5.9096 1.1661 30 1 -0.4851 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6175 -4.9205 -0.8903 33 1 0.6168 -4.9209 0.8897 34 1 3.5961 -5.1319 -1.3182 35 1 2.2769 -6.0379 -2.0972 36 1 3.2088 -8.1587 -1.2243 37 1 4.4208 -7.2921 -2.1996 38 1 5.3083 -9.2347 0.4707 39 1 9.1835 -9.3060 -2.1210 40 1 8.2455 -12.7836 0.0895 41 1 4.3968 -7.0208 3.1874 42 1 3.7202 -5.0242 1.0882 43 1 2.4924 -5.8510 2.0763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099739089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:56 Heat of formation + Delta-G solvation = -83.242677 kcal Electronic energy + Delta-G solvation = -29342.595960 eV Core-core repulsion = 25003.962069 eV Total energy + Delta-G solvation = -4338.633891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.75342 -40.19514 -39.12461 -37.74126 -35.81512 -35.19734 -34.70735 -33.83532 -31.61420 -31.22648 -30.56306 -29.46294 -27.19744 -25.06139 -24.06562 -23.13526 -22.95285 -22.18755 -20.64474 -20.09001 -19.30349 -18.63114 -17.90072 -17.21362 -17.06492 -16.78819 -16.44657 -16.05160 -15.50886 -15.18781 -14.94725 -14.81784 -14.54223 -14.17992 -14.01582 -13.87508 -13.76931 -13.52235 -13.34651 -12.81072 -12.48530 -12.17286 -11.92138 -11.71044 -11.52612 -11.25080 -11.20502 -11.20179 -10.94571 -10.73064 -10.50405 -10.43151 -10.28501 -10.15807 -9.87082 -9.53867 -9.48321 -9.27052 -9.02954 -8.02974 -7.47887 -6.48172 -3.89419 0.82272 1.73898 2.33099 2.99240 3.13276 3.17603 3.23283 3.29238 3.70351 3.78529 3.99815 4.13083 4.36117 4.52030 4.59983 4.85535 4.95717 5.15087 5.15155 5.16766 5.25182 5.28152 5.40101 5.48857 5.62309 5.72365 5.75835 5.89615 5.97968 6.07285 6.10626 6.17892 6.20300 6.43984 6.55063 6.69316 7.03771 7.23375 7.30967 7.48978 7.49176 7.69539 7.98337 8.10197 8.52601 9.10411 9.45815 9.96251 10.68224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.002257 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.798789 B =12403.849294 C =12887.609389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.555 5.555 10 C 0.403 3.597 11 O -0.592 6.592 12 C 0.042 3.958 13 N -0.511 5.511 14 C 0.042 3.958 15 C -0.118 4.118 16 C 0.155 3.845 17 H 0.099 0.901 18 N -0.697 5.697 19 C 0.599 3.401 20 O -0.534 6.534 21 C -0.070 4.070 22 C 0.015 3.985 23 O -0.201 6.201 24 C 0.176 3.824 25 N -0.466 5.466 26 C 0.107 3.893 27 H 0.061 0.939 28 O -0.562 6.562 29 C 0.004 3.996 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.231 0.769 40 H 0.255 0.745 41 H 0.378 0.622 42 H 0.098 0.902 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -23.112 0.498 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.189 3.811 11 O -0.479 6.479 12 C -0.090 4.090 13 N -0.235 5.235 14 C -0.087 4.087 15 C -0.157 4.157 16 C 0.051 3.949 17 H 0.117 0.883 18 N -0.346 5.346 19 C 0.384 3.616 20 O -0.411 6.411 21 C -0.190 4.190 22 C -0.059 4.059 23 O -0.086 6.086 24 C -0.053 4.053 25 N -0.195 5.195 26 C 0.047 3.953 27 H 0.079 0.921 28 O -0.366 6.366 29 C -0.124 4.124 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.270 0.730 41 H 0.225 0.775 42 H 0.116 0.884 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.365 -22.841 -0.003 24.686 hybrid contribution 0.043 1.334 0.312 1.370 sum 9.409 -21.507 0.310 23.477 Atomic orbital electron populations 1.69608 1.05964 1.28333 1.49949 1.25294 0.95635 0.99856 0.97026 0.85860 0.79273 0.80724 0.78477 1.20324 1.20852 1.19386 1.19723 0.93418 0.82353 1.47710 0.87916 1.42050 1.09309 1.04933 1.62670 1.21079 0.88848 0.85977 0.85194 1.90412 1.13859 1.86768 1.56858 1.22035 0.95256 0.88041 1.03633 1.62434 1.17903 1.40607 1.02565 1.22227 0.96687 0.97981 0.91791 1.21900 0.97109 0.99137 0.97547 1.21103 0.92496 0.87707 0.93637 0.88338 1.45730 1.23706 1.17696 1.47499 1.16738 0.80349 0.84594 0.79902 1.90862 1.70801 1.36821 1.42642 1.21877 0.98693 0.95651 1.02787 1.25351 0.95989 0.84255 1.00330 1.84446 1.47086 1.25722 1.51336 1.28134 0.84240 1.00740 0.92149 1.70762 1.26219 1.00474 1.22056 1.21968 0.90015 0.97720 0.85593 0.92084 1.86546 1.36381 1.97035 1.16688 1.23069 0.96336 0.99354 0.93684 0.91745 0.77365 0.89110 0.89212 0.90818 0.90921 0.91229 0.90601 0.75776 0.75268 0.72967 0.77486 0.88402 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.40 9.03 7.20 -10.99 -0.08 8.95 16 11 O -0.59 -14.97 11.20 5.55 0.06 -14.91 16 12 C 0.04 0.71 5.86 -4.97 -0.03 0.68 16 13 N -0.51 -8.11 4.86 -236.12 -1.15 -9.26 16 14 C 0.04 0.67 5.09 -3.84 -0.02 0.65 16 15 C -0.12 -1.67 5.67 -26.65 -0.15 -1.82 16 16 C 0.15 2.31 2.20 -67.81 -0.15 2.16 16 17 H 0.10 1.83 7.59 -51.93 -0.39 1.44 16 18 N -0.70 -9.29 4.99 -54.76 -0.27 -9.57 16 19 C 0.60 8.59 7.78 -12.52 -0.10 8.49 16 20 O -0.53 -9.28 16.56 5.27 0.09 -9.19 16 21 C -0.07 -0.81 6.99 -83.03 -0.58 -1.39 16 22 C 0.01 0.13 11.94 29.96 0.36 0.49 16 23 O -0.20 -1.50 10.73 6.51 0.07 -1.43 16 24 C 0.18 1.12 13.19 51.96 0.69 1.81 16 25 N -0.47 -4.64 11.06 -11.48 -0.13 -4.77 16 26 C 0.11 1.46 3.14 -26.65 -0.08 1.37 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 O -0.56 -7.53 13.23 -35.23 -0.47 -7.99 16 29 C 0.00 0.07 4.60 -3.84 -0.02 0.05 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 32 H 0.09 1.39 8.06 -51.93 -0.42 0.98 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.48 6.00 -51.93 -0.31 1.17 16 35 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.41 4.79 8.33 -40.82 -0.34 4.45 16 39 H 0.23 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.25 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.38 3.46 9.08 45.56 0.41 3.88 16 42 H 0.10 2.00 5.36 -51.93 -0.28 1.72 16 43 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -34.57 363.34 -5.62 -40.19 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -4.54 Total: 18.99 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.40 Total: 13.56 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.88 Total: -60.63 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.25 Total: -33.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.57 -5.62 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099739089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds