Wall clock time and date at job start Tue Mar 31 2020 20:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86790 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47705 * 270.00539 * 3 2 1 5 5 H 1.48504 * 109.47526 * 30.00771 * 3 2 1 6 6 H 1.48501 * 109.47385 * 150.00623 * 3 2 1 7 7 C 1.38955 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99757 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99972 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47091 * 179.97438 * 12 10 9 14 14 C 1.46856 * 110.99619 * 293.95260 * 13 12 10 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 18 18 N 1.46502 * 109.52268 * 177.58131 * 16 15 14 19 19 C 1.34778 * 119.99844 * 84.99869 * 18 16 15 20 20 O 1.21684 * 120.00067 * 0.02562 * 19 18 16 21 21 C 1.46719 * 120.00107 * 179.97438 * 19 18 16 22 22 C 1.36336 * 126.64777 * 179.71294 * 21 19 18 23 23 N 1.33689 * 107.45565 * 179.84183 * 22 21 19 24 24 C 1.30617 * 108.99572 * 0.43278 * 23 22 21 25 25 O 1.33670 * 109.15012 * 359.72785 * 24 23 22 26 26 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 27 27 H 1.09007 * 109.52297 * 62.34418 * 26 16 15 28 28 O 1.42908 * 109.49161 * 182.42076 * 26 16 15 29 29 C 1.46846 * 111.00121 * 58.16143 * 13 12 10 30 30 H 0.97004 * 119.99718 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00270 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47108 * 59.99639 * 12 10 9 33 33 H 1.09002 * 109.47016 * 299.99547 * 12 10 9 34 34 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 35 35 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 36 36 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 37 37 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 38 38 H 0.96992 * 119.99779 * 264.99656 * 18 16 15 39 39 H 1.08008 * 126.27063 * 0.02562 * 22 21 19 40 40 H 1.08001 * 125.42782 * 179.75475 * 24 23 22 41 41 H 0.96699 * 113.99961 * 179.82495 * 28 26 16 42 42 H 1.09004 * 109.46012 * 294.17710 * 29 13 12 43 43 H 1.08994 * 109.46057 * 54.14289 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0021 12 6 5.5606 -2.3707 -0.0021 13 7 6.0503 -3.7557 -0.0027 14 6 5.7008 -4.4379 1.2499 15 6 6.3490 -5.8241 1.2753 16 6 5.8540 -6.6365 0.0755 17 1 4.7752 -6.7739 0.1487 18 7 6.5154 -7.9437 0.0629 19 6 6.0140 -8.9597 0.7929 20 8 5.0116 -8.7914 1.4619 21 6 6.6761 -10.2689 0.7799 22 6 6.2915 -11.3822 1.4666 23 7 7.1613 -12.3543 1.1739 24 6 8.0611 -11.8861 0.3509 25 8 7.7904 -10.6037 0.0885 26 6 6.1871 -5.8802 -1.2145 27 1 7.2683 -5.7772 -1.3075 28 8 5.6787 -6.6043 -2.3367 29 6 5.5438 -4.4924 -1.1677 30 1 -0.4850 0.8401 0.0004 31 1 3.8648 -0.3635 -0.0014 32 1 5.9240 -1.8576 0.8883 33 1 5.9240 -1.8561 -0.8917 34 1 4.6179 -4.5421 1.3169 35 1 6.0625 -3.8524 2.0952 36 1 7.4327 -5.7201 1.2222 37 1 6.0773 -6.3360 2.1985 38 1 7.3142 -8.0778 -0.4707 39 1 5.4386 -11.4645 2.1240 40 1 8.8914 -12.4461 -0.0535 41 1 5.8514 -6.1811 -3.1888 42 1 4.4616 -4.5963 -1.0893 43 1 5.7911 -3.9466 -2.0781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099937301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:17 Heat of formation + Delta-G solvation = -73.122160 kcal Electronic energy + Delta-G solvation = -29427.223489 eV Core-core repulsion = 25089.028456 eV Total energy + Delta-G solvation = -4338.195033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.77289 -40.35806 -39.30608 -37.92499 -35.96085 -35.44739 -34.78723 -33.94028 -31.98539 -31.70250 -30.54581 -29.59219 -27.37721 -25.05169 -24.02144 -23.19072 -23.02741 -22.29829 -20.87064 -20.22219 -19.52631 -18.80020 -18.30104 -17.35203 -17.19025 -17.15038 -16.61597 -16.10219 -15.36201 -15.32660 -14.96796 -14.75978 -14.70079 -14.34421 -14.10708 -13.91879 -13.84618 -13.61599 -13.18742 -12.94796 -12.64880 -12.38572 -12.32190 -11.88940 -11.87709 -11.41443 -11.36659 -11.25932 -11.09837 -10.88056 -10.66886 -10.66667 -10.32683 -10.08251 -10.01083 -9.58224 -9.54657 -9.42086 -9.20405 -8.26817 -7.63297 -6.40251 -3.91832 0.49911 2.08298 2.10090 2.85843 2.91403 2.95873 3.00271 3.09477 3.57147 3.76374 3.85906 4.02085 4.21020 4.51253 4.57861 4.58952 4.71770 5.00709 5.05680 5.12662 5.14396 5.20608 5.26428 5.34559 5.49775 5.59089 5.71739 5.78179 5.81332 5.81557 5.95244 5.96607 6.05906 6.23102 6.42579 6.54841 7.02398 7.07556 7.15969 7.27330 7.46524 7.57294 7.83254 8.05695 8.47551 8.85039 9.32239 9.69588 10.72356 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.002250 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.629094 B =12444.023279 C =12744.956006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.309 4.309 8 H 0.120 0.880 9 N -0.581 5.581 10 C 0.411 3.589 11 O -0.574 6.574 12 C 0.039 3.961 13 N -0.510 5.510 14 C 0.040 3.960 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.102 0.898 18 N -0.703 5.703 19 C 0.606 3.394 20 O -0.510 6.510 21 C -0.102 4.102 22 C 0.049 3.951 23 N -0.494 5.494 24 C 0.196 3.804 25 O -0.192 6.192 26 C 0.107 3.893 27 H 0.062 0.938 28 O -0.562 6.562 29 C 0.003 3.997 30 H 0.275 0.725 31 H 0.371 0.629 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.404 0.596 39 H 0.198 0.802 40 H 0.256 0.744 41 H 0.379 0.621 42 H 0.099 0.901 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.163 -14.215 -1.993 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.137 0.863 9 N -0.219 5.219 10 C 0.197 3.803 11 O -0.460 6.460 12 C -0.092 4.092 13 N -0.235 5.235 14 C -0.088 4.088 15 C -0.158 4.158 16 C 0.050 3.950 17 H 0.120 0.880 18 N -0.352 5.352 19 C 0.390 3.610 20 O -0.386 6.386 21 C -0.158 4.158 22 C -0.094 4.094 23 N -0.222 5.222 24 C -0.029 4.029 25 O -0.078 6.078 26 C 0.047 3.953 27 H 0.080 0.920 28 O -0.367 6.367 29 C -0.126 4.126 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.215 0.785 40 H 0.272 0.728 41 H 0.227 0.773 42 H 0.117 0.883 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.167 -15.636 -0.913 25.535 hybrid contribution 0.375 2.383 -0.954 2.594 sum 20.543 -13.253 -1.866 24.518 Atomic orbital electron populations 1.69629 1.05724 1.27686 1.48472 1.25097 0.95531 0.98148 0.97368 0.86656 0.79807 0.83896 0.78949 1.19552 1.20083 1.19400 1.19459 0.79394 0.96636 1.48276 0.86276 1.42394 1.07666 1.06479 1.65330 1.21014 0.89840 0.84636 0.84774 1.90454 1.69783 1.30414 1.55305 1.22084 0.92243 0.91167 1.03754 1.62442 1.56972 1.01372 1.02692 1.22253 1.01579 0.93271 0.91716 1.21906 1.00960 0.95316 0.97570 1.21176 0.99496 0.80555 0.93800 0.87997 1.45836 1.30810 1.11046 1.47488 1.16345 0.83331 0.80797 0.80493 1.90948 1.23866 1.81549 1.42261 1.23319 0.91165 0.98761 1.02542 1.23641 0.99585 0.86792 0.99335 1.70459 1.04722 1.32033 1.15027 1.28421 0.99849 0.79463 0.95151 1.84501 1.37665 1.29823 1.55770 1.21975 0.96888 0.90832 0.85573 0.92022 1.86550 1.82578 1.50804 1.16733 1.23089 1.03115 0.92703 0.93680 0.91479 0.79583 0.88953 0.89048 0.90669 0.90740 0.91147 0.90391 0.76191 0.78518 0.72825 0.77337 0.88288 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.50 0.77 -24.40 16 2 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 3 Si 0.88 18.82 27.73 -169.99 -4.71 14.11 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.17 5.09 -10.96 -0.06 -13.22 16 10 C 0.41 8.63 7.20 -10.98 -0.08 8.55 16 11 O -0.57 -14.07 11.20 5.55 0.06 -14.01 16 12 C 0.04 0.60 5.86 -4.97 -0.03 0.57 16 13 N -0.51 -7.35 4.86 -236.11 -1.15 -8.49 16 14 C 0.04 0.60 5.10 -3.83 -0.02 0.58 16 15 C -0.12 -1.51 5.67 -26.65 -0.15 -1.66 16 16 C 0.15 2.07 2.20 -67.76 -0.15 1.92 16 17 H 0.10 1.76 7.59 -51.93 -0.39 1.37 16 18 N -0.70 -8.12 5.00 -54.94 -0.27 -8.40 16 19 C 0.61 7.95 7.75 -12.83 -0.10 7.85 16 20 O -0.51 -8.45 16.56 5.20 0.09 -8.37 16 21 C -0.10 -1.12 7.18 -36.84 -0.26 -1.38 16 22 C 0.05 0.52 11.66 -17.43 -0.20 0.31 16 23 N -0.49 -4.79 11.26 -14.67 -0.17 -4.95 16 24 C 0.20 1.28 13.21 52.25 0.69 1.97 16 25 O -0.19 -1.64 10.57 4.42 0.05 -1.59 16 26 C 0.11 1.30 3.14 -26.61 -0.08 1.22 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 28 O -0.56 -6.76 13.24 -35.23 -0.47 -7.23 16 29 C 0.00 0.04 4.60 -3.84 -0.02 0.02 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.37 7.37 5.76 -40.82 -0.24 7.14 16 32 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.42 6.00 -51.93 -0.31 1.11 16 35 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 3.73 8.40 -40.82 -0.34 3.39 16 39 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.26 0.24 8.06 -52.49 -0.42 -0.18 16 41 H 0.38 2.99 9.08 45.56 0.41 3.40 16 42 H 0.10 1.90 5.36 -51.93 -0.28 1.62 16 43 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -35.33 360.23 -5.58 -40.91 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -4.50 Total: 17.85 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -0.65 Total: 12.37 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.87 Total: -59.47 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.27 Total: -31.19 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.33 -5.58 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.214 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds