Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86790 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47705 * 270.00539 * 3 2 1 5 5 H 1.48504 * 109.47526 * 30.00771 * 3 2 1 6 6 H 1.48501 * 109.47385 * 150.00623 * 3 2 1 7 7 C 1.38955 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99757 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99972 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47091 * 179.97438 * 12 10 9 14 14 C 1.46856 * 110.99619 * 293.95260 * 13 12 10 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 18 18 N 1.46502 * 109.52268 * 177.58131 * 16 15 14 19 19 C 1.34778 * 119.99844 * 84.99869 * 18 16 15 20 20 O 1.21684 * 120.00067 * 0.02562 * 19 18 16 21 21 C 1.46719 * 120.00107 * 179.97438 * 19 18 16 22 22 C 1.36336 * 126.64777 * 179.71294 * 21 19 18 23 23 N 1.33689 * 107.45565 * 179.84183 * 22 21 19 24 24 C 1.30617 * 108.99572 * 0.43278 * 23 22 21 25 25 O 1.33670 * 109.15012 * 359.72785 * 24 23 22 26 26 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 27 27 H 1.09007 * 109.52297 * 62.34418 * 26 16 15 28 28 O 1.42908 * 109.49161 * 182.42076 * 26 16 15 29 29 C 1.46846 * 111.00121 * 58.16143 * 13 12 10 30 30 H 0.97004 * 119.99718 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00270 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47108 * 59.99639 * 12 10 9 33 33 H 1.09002 * 109.47016 * 299.99547 * 12 10 9 34 34 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 35 35 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 36 36 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 37 37 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 38 38 H 0.96992 * 119.99779 * 264.99656 * 18 16 15 39 39 H 1.08008 * 126.27063 * 0.02562 * 22 21 19 40 40 H 1.08001 * 125.42782 * 179.75475 * 24 23 22 41 41 H 0.96699 * 113.99961 * 179.82495 * 28 26 16 42 42 H 1.09004 * 109.46012 * 294.17710 * 29 13 12 43 43 H 1.08994 * 109.46057 * 54.14289 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3707 -0.0021 11 8 3.4471 -3.4211 -0.0021 12 6 5.5606 -2.3707 -0.0021 13 7 6.0503 -3.7557 -0.0027 14 6 5.7008 -4.4379 1.2499 15 6 6.3490 -5.8241 1.2753 16 6 5.8540 -6.6365 0.0755 17 1 4.7752 -6.7739 0.1487 18 7 6.5154 -7.9437 0.0629 19 6 6.0140 -8.9597 0.7929 20 8 5.0116 -8.7914 1.4619 21 6 6.6761 -10.2689 0.7799 22 6 6.2915 -11.3822 1.4666 23 7 7.1613 -12.3543 1.1739 24 6 8.0611 -11.8861 0.3509 25 8 7.7904 -10.6037 0.0885 26 6 6.1871 -5.8802 -1.2145 27 1 7.2683 -5.7772 -1.3075 28 8 5.6787 -6.6043 -2.3367 29 6 5.5438 -4.4924 -1.1677 30 1 -0.4850 0.8401 0.0004 31 1 3.8648 -0.3635 -0.0014 32 1 5.9240 -1.8576 0.8883 33 1 5.9240 -1.8561 -0.8917 34 1 4.6179 -4.5421 1.3169 35 1 6.0625 -3.8524 2.0952 36 1 7.4327 -5.7201 1.2222 37 1 6.0773 -6.3360 2.1985 38 1 7.3142 -8.0778 -0.4707 39 1 5.4386 -11.4645 2.1240 40 1 8.8914 -12.4461 -0.0535 41 1 5.8514 -6.1811 -3.1888 42 1 4.4616 -4.5963 -1.0893 43 1 5.7911 -3.9466 -2.0781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099937301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = -109.688546 kcal Electronic energy + Delta-G solvation = -29428.809127 eV Core-core repulsion = 25089.028456 eV Total energy + Delta-G solvation = -4339.780670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.46654 -41.53708 -40.65876 -39.26711 -37.15839 -36.31926 -35.95354 -35.58620 -33.82030 -32.96431 -31.40535 -30.71659 -28.76986 -26.53299 -25.21018 -24.22698 -23.81469 -23.40644 -21.84417 -21.42013 -21.27933 -20.21940 -19.56790 -18.35220 -17.97858 -17.89485 -17.71645 -17.67809 -16.90681 -16.48849 -16.30336 -15.93129 -15.71120 -15.48231 -15.34735 -15.29642 -14.99839 -14.82524 -14.51310 -14.30437 -14.06242 -13.76290 -13.52253 -13.35051 -13.00495 -12.59908 -12.52758 -12.43467 -12.26079 -12.15456 -12.04256 -12.01461 -11.72603 -11.47660 -11.35118 -11.06132 -10.97279 -10.48278 -10.23815 -10.10028 -9.11360 -8.44135 -6.05036 -0.26996 1.28993 1.32424 1.34162 1.39741 1.43754 1.90491 1.92101 2.02297 2.21325 2.77223 2.95568 3.12700 3.15492 3.25869 3.61904 3.73059 3.83117 3.96232 3.97684 4.12565 4.20959 4.34306 4.38028 4.39900 4.45020 4.57750 4.64332 4.67996 4.81128 4.84036 4.93466 5.12918 5.16246 5.19928 5.33205 5.50475 5.82626 5.93503 5.96146 6.18498 6.50914 6.55066 6.82008 6.86364 6.88844 7.36680 7.94126 8.73599 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.002250 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.629094 B =12444.023279 C =12744.956006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.019 4.019 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.227 1.227 7 C -0.328 4.328 8 H 0.050 0.950 9 N -0.587 5.587 10 C 0.413 3.587 11 O -0.614 6.614 12 C 0.047 3.953 13 N -0.489 5.489 14 C 0.041 3.959 15 C -0.107 4.107 16 C 0.154 3.846 17 H 0.049 0.951 18 N -0.688 5.688 19 C 0.605 3.395 20 O -0.559 6.559 21 C -0.123 4.123 22 C 0.049 3.951 23 N -0.527 5.527 24 C 0.230 3.770 25 O -0.188 6.188 26 C 0.120 3.880 27 H 0.101 0.899 28 O -0.578 6.578 29 C 0.003 3.997 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.419 0.581 39 H 0.196 0.804 40 H 0.312 0.688 41 H 0.398 0.602 42 H 0.044 0.956 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.879 -13.295 -3.010 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.217 4.217 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.151 1.151 7 C -0.458 4.458 8 H 0.068 0.932 9 N -0.228 5.228 10 C 0.201 3.799 11 O -0.501 6.501 12 C -0.085 4.085 13 N -0.212 5.212 14 C -0.088 4.088 15 C -0.146 4.146 16 C 0.049 3.951 17 H 0.067 0.933 18 N -0.337 5.337 19 C 0.391 3.609 20 O -0.439 6.439 21 C -0.179 4.179 22 C -0.093 4.093 23 N -0.255 5.255 24 C 0.006 3.994 25 O -0.075 6.075 26 C 0.061 3.939 27 H 0.119 0.881 28 O -0.386 6.386 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.256 0.744 39 H 0.213 0.787 40 H 0.326 0.674 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 25.946 -14.744 -1.961 29.907 hybrid contribution -1.389 1.803 -0.690 2.379 sum 24.557 -12.941 -2.651 27.884 Atomic orbital electron populations 1.69825 1.08325 1.29290 1.50152 1.26211 0.96502 1.03004 0.95993 0.85325 0.79538 0.76382 0.80011 1.18007 1.20298 1.15052 1.18978 0.81860 0.94651 1.50300 0.93175 1.42226 1.05695 1.08000 1.66861 1.22448 0.92659 0.83344 0.81450 1.90504 1.71721 1.32129 1.55697 1.22341 0.86744 0.92300 1.07116 1.62561 1.55351 1.01057 1.02225 1.22226 0.98656 0.95072 0.92830 1.21797 1.02444 0.93626 0.96704 1.21003 0.96816 0.81821 0.95441 0.93273 1.45634 1.30889 1.10053 1.47157 1.16601 0.82806 0.81736 0.79782 1.90921 1.26057 1.82580 1.44325 1.22720 0.92792 0.97810 1.04568 1.23761 0.99657 0.87093 0.98834 1.70507 1.05813 1.32181 1.17017 1.29728 0.99120 0.78397 0.92116 1.84504 1.36666 1.30813 1.55491 1.21869 0.98448 0.88769 0.84853 0.88117 1.86523 1.83003 1.51215 1.17830 1.23065 1.00060 0.94806 0.94678 0.91180 0.77377 0.85670 0.85269 0.95856 0.88812 0.87849 0.91563 0.74382 0.78718 0.67354 0.75098 0.93736 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 13.96 21.66 0.30 -56.38 16 2 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 3 Si 0.97 38.14 27.73 68.60 1.90 40.04 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 7 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 8 H 0.05 3.52 7.39 -2.91 -0.02 3.50 16 9 N -0.59 -26.65 5.09 -306.98 -1.56 -28.21 16 10 C 0.41 17.50 7.20 87.66 0.63 18.13 16 11 O -0.61 -32.26 11.20 -3.07 -0.03 -32.29 16 12 C 0.05 1.27 5.86 85.56 0.50 1.77 16 13 N -0.49 -12.92 4.86 -900.90 -4.38 -17.30 16 14 C 0.04 1.20 5.10 86.32 0.44 1.64 16 15 C -0.11 -2.66 5.67 30.65 0.17 -2.49 16 16 C 0.15 4.22 2.20 45.10 0.10 4.32 16 17 H 0.05 1.88 7.59 -2.39 -0.02 1.86 16 18 N -0.69 -15.62 5.00 -445.94 -2.23 -17.85 16 19 C 0.60 16.43 7.75 86.46 0.67 17.10 16 20 O -0.56 -20.12 16.56 -4.30 -0.07 -20.19 16 21 C -0.12 -2.65 7.18 24.04 0.17 -2.47 16 22 C 0.05 1.03 11.66 83.97 0.98 2.01 16 23 N -0.53 -9.32 11.26 -315.09 -3.55 -12.87 16 24 C 0.23 2.22 13.21 130.42 1.72 3.94 16 25 O -0.19 -2.74 10.57 -7.11 -0.08 -2.81 16 26 C 0.12 2.73 3.14 30.67 0.10 2.83 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 28 O -0.58 -13.29 13.24 -148.98 -1.97 -15.26 16 29 C 0.00 0.08 4.60 86.32 0.40 0.48 16 30 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.39 14.47 5.76 -92.71 -0.53 13.93 16 32 H 0.13 2.72 8.06 -2.39 -0.02 2.70 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.02 0.94 6.00 -2.39 -0.01 0.93 16 35 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.42 6.84 8.40 -92.71 -0.78 6.06 16 39 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.31 -1.16 8.06 -2.91 -0.02 -1.18 16 41 H 0.40 5.47 9.08 -74.06 -0.67 4.80 16 42 H 0.04 1.81 5.36 -2.38 -0.01 1.79 16 43 H 0.09 2.21 8.12 -2.39 -0.02 2.19 16 Total: -1.00 -89.55 360.23 -5.40 -94.95 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.94 Total: 39.68 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.20 Total: 28.48 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -11.41 Total: -132.60 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -2.15 Total: -70.56 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -89.55 -5.40 -94.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.734 kcal (2) G-P(sol) polarization free energy of solvation -89.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds