Wall clock time and date at job start Tue Mar 31 2020 20:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48505 * 109.47107 * 269.99600 * 3 2 1 5 5 H 1.48503 * 109.47505 * 29.99986 * 3 2 1 6 6 H 1.48507 * 109.47125 * 149.99923 * 3 2 1 7 7 C 1.38953 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99556 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00107 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99843 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00263 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99679 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46747 * 179.97438 * 12 10 9 14 14 C 1.46850 * 110.99805 * 65.79437 * 13 12 10 15 15 C 1.53046 * 109.52214 * 185.83526 * 14 13 12 16 16 C 1.53112 * 109.27827 * 300.82059 * 15 14 13 17 17 H 1.09006 * 109.57710 * 297.71445 * 16 15 14 18 18 N 1.46497 * 109.52125 * 177.56341 * 16 15 14 19 19 C 1.34776 * 120.00521 * 85.31716 * 18 16 15 20 20 O 1.21683 * 119.99615 * 359.97438 * 19 18 16 21 21 C 1.46725 * 119.99982 * 179.97438 * 19 18 16 22 22 C 1.36346 * 126.64132 * 179.97438 * 21 19 18 23 23 N 1.33685 * 107.44936 * 180.02562 * 22 21 19 24 24 C 1.30618 * 108.99988 * 0.02562 * 23 22 21 25 25 O 1.33664 * 109.14984 * 359.97438 * 24 23 22 26 26 C 1.53119 * 109.16422 * 57.65351 * 16 15 14 27 27 H 1.09002 * 109.50149 * 182.40367 * 26 16 15 28 28 O 1.42898 * 109.50140 * 62.32639 * 26 16 15 29 29 C 1.46847 * 110.99900 * 190.00020 * 13 12 10 30 30 H 0.97002 * 120.00533 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99833 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47442 * 59.99995 * 12 10 9 33 33 H 1.08990 * 109.47358 * 299.99393 * 12 10 9 34 34 H 1.08995 * 109.46189 * 305.85271 * 14 13 12 35 35 H 1.09000 * 109.46523 * 65.83073 * 14 13 12 36 36 H 1.09000 * 109.50133 * 180.87962 * 15 14 13 37 37 H 1.08997 * 109.49985 * 60.76009 * 15 14 13 38 38 H 0.97006 * 119.99659 * 265.31283 * 18 16 15 39 39 H 1.08000 * 126.27132 * 0.02562 * 22 21 19 40 40 H 1.07996 * 125.41874 * 180.26645 * 24 23 22 41 41 H 0.96698 * 114.00087 * 180.02562 * 28 26 16 42 42 H 1.08997 * 109.46338 * 54.14933 * 29 13 12 43 43 H 1.09005 * 109.45484 * 294.16981 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5608 -2.3703 0.0011 13 7 6.0504 -3.7553 0.0017 14 6 5.6959 -4.4394 -1.2485 15 6 6.0916 -5.9148 -1.1542 16 6 7.5984 -6.0190 -0.9031 17 1 8.1396 -5.5849 -1.7439 18 7 7.9737 -7.4272 -0.7540 19 6 8.2414 -8.1724 -1.8446 20 8 8.1710 -7.6757 -2.9532 21 6 8.6178 -9.5827 -1.6951 22 6 8.9150 -10.4564 -2.6988 23 7 9.2027 -11.6333 -2.1337 24 6 9.0951 -11.5199 -0.8369 25 8 8.7363 -10.2684 -0.5344 26 6 7.9483 -5.2576 0.3785 27 1 9.0258 -5.2922 0.5396 28 8 7.2804 -5.8602 1.4887 29 6 7.4987 -3.8013 0.2398 30 1 -0.4851 0.8400 -0.0004 31 1 3.8648 -0.3632 0.0007 32 1 5.9241 -1.8565 0.8910 33 1 5.9241 -1.8566 -0.8889 34 1 4.6212 -4.3614 -1.4129 35 1 6.2252 -3.9740 -2.0799 36 1 5.8425 -6.4187 -2.0880 37 1 5.5523 -6.3843 -0.3315 38 1 8.0295 -7.8233 0.1297 39 1 8.9174 -10.2377 -3.7564 40 1 9.2728 -12.3103 -0.1226 41 1 7.4566 -5.4280 2.3356 42 1 7.7335 -3.2600 1.1562 43 1 8.0194 -3.3389 -0.5989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099937303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:22 Heat of formation + Delta-G solvation = -71.064149 kcal Electronic energy + Delta-G solvation = -29139.325534 eV Core-core repulsion = 24801.219743 eV Total energy + Delta-G solvation = -4338.105791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.83561 -40.42391 -39.16721 -38.08717 -35.78068 -35.49880 -34.82268 -33.90085 -31.99252 -31.61345 -30.59312 -29.93648 -27.47039 -25.07909 -24.03425 -23.25879 -23.13997 -22.44723 -20.91737 -20.23536 -19.37781 -18.81192 -18.30747 -17.32061 -17.22900 -17.07269 -16.74498 -15.92084 -15.52533 -15.23684 -15.04319 -14.86482 -14.74146 -14.57244 -14.21982 -13.95255 -13.79086 -13.53235 -13.38601 -12.95936 -12.79919 -12.43329 -12.05419 -11.94812 -11.91327 -11.73418 -11.38645 -11.31728 -11.23491 -10.91047 -10.74380 -10.60334 -10.46936 -10.12429 -9.97136 -9.63315 -9.54033 -9.25337 -8.55768 -8.18460 -7.96457 -6.31194 -3.82551 0.42060 2.01770 2.03118 2.73774 2.81457 3.01279 3.05722 3.14191 3.70024 3.72346 3.74896 4.09186 4.11177 4.40662 4.48224 4.51547 4.71897 4.75055 4.79565 5.06586 5.10725 5.16139 5.20399 5.33032 5.37642 5.44230 5.54649 5.60490 5.62900 5.74590 5.78585 5.90189 5.95192 6.05998 6.42906 6.49211 6.96039 7.12086 7.19786 7.25156 7.53494 7.58178 7.71360 8.14601 8.60022 8.95360 9.42275 9.83331 10.81927 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.002105 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.761306 B =13299.759410 C =13575.530600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.452 3.548 11 O -0.556 6.556 12 C 0.043 3.957 13 N -0.504 5.504 14 C 0.055 3.945 15 C -0.119 4.119 16 C 0.152 3.848 17 H 0.098 0.902 18 N -0.703 5.703 19 C 0.606 3.394 20 O -0.516 6.516 21 C -0.106 4.106 22 C 0.051 3.949 23 N -0.495 5.495 24 C 0.200 3.800 25 O -0.190 6.190 26 C 0.107 3.893 27 H 0.062 0.938 28 O -0.547 6.547 29 C 0.024 3.976 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.198 0.802 40 H 0.257 0.743 41 H 0.381 0.619 42 H 0.083 0.917 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.575 -14.268 1.447 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.238 3.762 11 O -0.437 6.437 12 C -0.088 4.088 13 N -0.229 5.229 14 C -0.073 4.073 15 C -0.157 4.157 16 C 0.048 3.952 17 H 0.116 0.884 18 N -0.353 5.353 19 C 0.391 3.609 20 O -0.393 6.393 21 C -0.162 4.162 22 C -0.092 4.092 23 N -0.223 5.223 24 C -0.025 4.025 25 O -0.076 6.076 26 C 0.047 3.953 27 H 0.080 0.920 28 O -0.353 6.353 29 C -0.106 4.106 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.247 0.753 39 H 0.215 0.785 40 H 0.272 0.728 41 H 0.228 0.772 42 H 0.101 0.899 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.602 -15.665 0.346 27.502 hybrid contribution 1.074 2.597 0.641 2.883 sum 23.676 -13.068 0.987 27.061 Atomic orbital electron populations 1.69618 1.05631 1.27469 1.49429 1.25041 0.95493 0.97966 0.97732 0.86674 0.79755 0.84106 0.78834 1.19684 1.20203 1.19536 1.19421 0.79204 0.96610 1.47983 0.86260 1.42215 1.07534 1.06118 1.67259 1.19616 0.88039 0.84556 0.84004 1.90541 1.69292 1.30706 1.53200 1.21888 0.95757 0.89660 1.01536 1.61456 1.10660 1.14319 1.36458 1.22255 1.04103 0.92569 0.88375 1.21871 0.93617 0.97248 1.02992 1.21261 0.97586 0.79610 0.96742 0.88390 1.45884 1.68341 1.11858 1.09262 1.16378 0.77464 0.81901 0.85186 1.90919 1.53137 1.70428 1.24804 1.23255 1.13276 0.95485 0.84140 1.23638 0.97310 0.86903 1.01323 1.70467 1.19677 1.25454 1.06725 1.28454 0.95644 0.84576 0.93857 1.84515 1.65553 1.23262 1.34256 1.21993 0.94693 0.91515 0.87112 0.91977 1.86494 1.73606 1.57617 1.17567 1.22800 0.89726 0.96331 1.01700 0.91629 0.79777 0.89273 0.93365 0.87225 0.95743 0.91227 0.89517 0.75284 0.78545 0.72751 0.77163 0.89895 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 10 C 0.45 10.02 7.46 -10.98 -0.08 9.94 16 11 O -0.56 -14.55 13.90 5.55 0.08 -14.47 16 12 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 13 N -0.50 -7.53 4.28 -236.11 -1.01 -8.55 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 C -0.12 -1.67 5.52 -26.65 -0.15 -1.82 16 16 C 0.15 1.70 2.31 -67.81 -0.16 1.55 16 17 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 18 N -0.70 -7.25 5.04 -54.98 -0.28 -7.53 16 19 C 0.61 7.01 7.76 -12.83 -0.10 6.91 16 20 O -0.52 -7.39 16.55 5.20 0.09 -7.31 16 21 C -0.11 -1.06 7.18 -36.84 -0.26 -1.32 16 22 C 0.05 0.49 11.66 -17.43 -0.20 0.29 16 23 N -0.50 -4.48 11.26 -14.67 -0.17 -4.65 16 24 C 0.20 1.22 13.21 52.25 0.69 1.91 16 25 O -0.19 -1.53 10.57 4.45 0.05 -1.49 16 26 C 0.11 1.00 3.42 -26.65 -0.09 0.91 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 O -0.55 -5.49 12.06 -35.23 -0.42 -5.91 16 29 C 0.02 0.25 5.12 -3.83 -0.02 0.23 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 32 H 0.09 1.22 7.99 -51.93 -0.41 0.80 16 33 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.11 2.16 5.78 -51.93 -0.30 1.86 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.39 7.80 -51.93 -0.40 0.99 16 38 H 0.41 3.74 7.91 -40.82 -0.32 3.42 16 39 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.26 0.17 8.06 -52.49 -0.42 -0.25 16 41 H 0.38 2.52 9.08 45.56 0.41 2.94 16 42 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -36.35 363.45 -5.44 -41.79 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -4.59 Total: 14.51 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -0.67 Total: 12.45 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.73 Total: -59.53 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.21 Total: -29.17 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.35 -5.44 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.271 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds