Wall clock time and date at job start Tue Mar 31 2020 20:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48505 * 109.47107 * 269.99600 * 3 2 1 5 5 H 1.48503 * 109.47505 * 29.99986 * 3 2 1 6 6 H 1.48507 * 109.47125 * 149.99923 * 3 2 1 7 7 C 1.38953 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99556 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00107 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99843 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00263 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99679 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46747 * 179.97438 * 12 10 9 14 14 C 1.46850 * 110.99805 * 65.79437 * 13 12 10 15 15 C 1.53046 * 109.52214 * 185.83526 * 14 13 12 16 16 C 1.53112 * 109.27827 * 300.82059 * 15 14 13 17 17 H 1.09006 * 109.57710 * 297.71445 * 16 15 14 18 18 N 1.46497 * 109.52125 * 177.56341 * 16 15 14 19 19 C 1.34776 * 120.00521 * 85.31716 * 18 16 15 20 20 O 1.21683 * 119.99615 * 359.97438 * 19 18 16 21 21 C 1.46725 * 119.99982 * 179.97438 * 19 18 16 22 22 C 1.36346 * 126.64132 * 179.97438 * 21 19 18 23 23 N 1.33685 * 107.44936 * 180.02562 * 22 21 19 24 24 C 1.30618 * 108.99988 * 0.02562 * 23 22 21 25 25 O 1.33664 * 109.14984 * 359.97438 * 24 23 22 26 26 C 1.53119 * 109.16422 * 57.65351 * 16 15 14 27 27 H 1.09002 * 109.50149 * 182.40367 * 26 16 15 28 28 O 1.42898 * 109.50140 * 62.32639 * 26 16 15 29 29 C 1.46847 * 110.99900 * 190.00020 * 13 12 10 30 30 H 0.97002 * 120.00533 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99833 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47442 * 59.99995 * 12 10 9 33 33 H 1.08990 * 109.47358 * 299.99393 * 12 10 9 34 34 H 1.08995 * 109.46189 * 305.85271 * 14 13 12 35 35 H 1.09000 * 109.46523 * 65.83073 * 14 13 12 36 36 H 1.09000 * 109.50133 * 180.87962 * 15 14 13 37 37 H 1.08997 * 109.49985 * 60.76009 * 15 14 13 38 38 H 0.97006 * 119.99659 * 265.31283 * 18 16 15 39 39 H 1.08000 * 126.27132 * 0.02562 * 22 21 19 40 40 H 1.07996 * 125.41874 * 180.26645 * 24 23 22 41 41 H 0.96698 * 114.00087 * 180.02562 * 28 26 16 42 42 H 1.08997 * 109.46338 * 54.14933 * 29 13 12 43 43 H 1.09005 * 109.45484 * 294.16981 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5608 -2.3703 0.0011 13 7 6.0504 -3.7553 0.0017 14 6 5.6959 -4.4394 -1.2485 15 6 6.0916 -5.9148 -1.1542 16 6 7.5984 -6.0190 -0.9031 17 1 8.1396 -5.5849 -1.7439 18 7 7.9737 -7.4272 -0.7540 19 6 8.2414 -8.1724 -1.8446 20 8 8.1710 -7.6757 -2.9532 21 6 8.6178 -9.5827 -1.6951 22 6 8.9150 -10.4564 -2.6988 23 7 9.2027 -11.6333 -2.1337 24 6 9.0951 -11.5199 -0.8369 25 8 8.7363 -10.2684 -0.5344 26 6 7.9483 -5.2576 0.3785 27 1 9.0258 -5.2922 0.5396 28 8 7.2804 -5.8602 1.4887 29 6 7.4987 -3.8013 0.2398 30 1 -0.4851 0.8400 -0.0004 31 1 3.8648 -0.3632 0.0007 32 1 5.9241 -1.8565 0.8910 33 1 5.9241 -1.8566 -0.8889 34 1 4.6212 -4.3614 -1.4129 35 1 6.2252 -3.9740 -2.0799 36 1 5.8425 -6.4187 -2.0880 37 1 5.5523 -6.3843 -0.3315 38 1 8.0295 -7.8233 0.1297 39 1 8.9174 -10.2377 -3.7564 40 1 9.2728 -12.3103 -0.1226 41 1 7.4566 -5.4280 2.3356 42 1 7.7335 -3.2600 1.1562 43 1 8.0194 -3.3389 -0.5989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099937303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:21 Heat of formation + Delta-G solvation = -107.581865 kcal Electronic energy + Delta-G solvation = -29140.909061 eV Core-core repulsion = 24801.219743 eV Total energy + Delta-G solvation = -4339.689318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.46326 -41.38061 -40.46716 -39.44762 -36.86584 -36.20183 -35.86727 -35.62737 -33.75759 -32.91374 -31.41090 -30.84398 -28.82358 -26.49061 -25.20746 -24.22191 -23.85731 -23.43611 -21.74678 -21.26678 -21.13925 -20.20007 -19.55765 -18.14318 -17.88887 -17.83334 -17.67428 -17.42478 -16.92064 -16.44534 -16.29716 -15.91565 -15.70330 -15.44668 -15.28181 -15.14913 -15.04703 -14.74711 -14.52624 -14.48943 -13.94509 -13.89311 -13.59641 -13.14029 -12.80426 -12.66822 -12.59931 -12.55043 -12.39141 -12.14268 -12.02786 -11.96957 -11.71056 -11.44980 -11.36558 -10.90225 -10.46973 -10.28164 -10.21207 -10.03826 -9.14379 -8.39755 -6.00337 -0.26500 1.30370 1.35354 1.36530 1.39917 1.45279 1.92369 1.99443 2.05185 2.24185 2.59590 3.16383 3.18282 3.25794 3.34641 3.64548 3.75701 3.82955 3.84844 3.97847 4.06049 4.21774 4.34650 4.40023 4.41775 4.49364 4.51529 4.59098 4.68800 4.72746 4.76260 4.83259 5.02471 5.18249 5.23557 5.33145 5.54818 5.90903 6.02682 6.20901 6.21950 6.51521 6.62061 6.86023 6.91188 7.01989 7.42668 8.01321 8.78095 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.002105 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.761306 B =13299.759410 C =13575.530600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.019 4.019 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.325 4.325 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.450 3.550 11 O -0.605 6.605 12 C 0.055 3.945 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.109 4.109 16 C 0.155 3.845 17 H 0.100 0.900 18 N -0.694 5.694 19 C 0.606 3.394 20 O -0.552 6.552 21 C -0.128 4.128 22 C 0.050 3.950 23 N -0.528 5.528 24 C 0.228 3.772 25 O -0.191 6.191 26 C 0.114 3.886 27 H 0.100 0.900 28 O -0.567 6.567 29 C 0.022 3.978 30 H 0.278 0.722 31 H 0.389 0.611 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.419 0.581 39 H 0.200 0.800 40 H 0.308 0.692 41 H 0.396 0.604 42 H 0.112 0.888 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.075 -13.101 2.925 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.217 4.217 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.151 1.151 7 C -0.454 4.454 8 H 0.071 0.929 9 N -0.236 5.236 10 C 0.237 3.763 11 O -0.489 6.489 12 C -0.076 4.076 13 N -0.250 5.250 14 C -0.068 4.068 15 C -0.148 4.148 16 C 0.050 3.950 17 H 0.118 0.882 18 N -0.343 5.343 19 C 0.392 3.608 20 O -0.432 6.432 21 C -0.183 4.183 22 C -0.092 4.092 23 N -0.256 5.256 24 C 0.004 3.996 25 O -0.078 6.078 26 C 0.054 3.946 27 H 0.117 0.883 28 O -0.375 6.375 29 C -0.106 4.106 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.256 0.744 39 H 0.217 0.783 40 H 0.323 0.677 41 H 0.247 0.753 42 H 0.130 0.870 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.147 -14.516 1.859 30.841 hybrid contribution -0.381 1.964 0.213 2.012 sum 26.766 -12.552 2.072 29.636 Atomic orbital electron populations 1.69812 1.08203 1.29175 1.50608 1.26149 0.96495 1.02829 0.96233 0.85344 0.79588 0.76600 0.79829 1.18362 1.20154 1.15096 1.18971 0.81593 0.94774 1.50096 0.92917 1.42040 1.05717 1.07624 1.68191 1.20993 0.91053 0.83238 0.80969 1.90536 1.71346 1.32628 1.54385 1.21837 0.90082 0.91106 1.04582 1.61366 1.14200 1.13692 1.35729 1.22015 1.01129 0.93889 0.89791 1.21693 0.96091 0.95939 1.01074 1.21193 0.94884 0.80445 0.98437 0.88248 1.45779 1.67635 1.11561 1.09366 1.16555 0.76833 0.82554 0.84833 1.90890 1.54849 1.71418 1.26017 1.22871 1.15459 0.95061 0.84930 1.23807 0.96476 0.87239 1.01687 1.70508 1.21498 1.25287 1.08272 1.29677 0.91689 0.84384 0.93875 1.84521 1.65857 1.23951 1.33433 1.22016 0.96447 0.90312 0.85783 0.88258 1.86470 1.74139 1.58271 1.18601 1.23007 0.86349 0.97483 1.03752 0.91240 0.77517 0.85517 0.90495 0.92324 0.94376 0.92860 0.92101 0.74419 0.78305 0.67695 0.75327 0.86987 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 13.96 21.66 0.30 -56.69 16 2 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 3 Si 0.97 38.63 27.74 68.60 1.90 40.53 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 7 C -0.32 -19.11 10.16 84.04 0.85 -18.25 16 8 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 9 N -0.59 -27.75 5.09 -306.99 -1.56 -29.31 16 10 C 0.45 20.07 7.46 87.66 0.65 20.72 16 11 O -0.61 -33.56 13.90 -3.06 -0.04 -33.60 16 12 C 0.05 1.59 5.45 85.56 0.47 2.05 16 13 N -0.52 -14.67 4.28 -900.90 -3.86 -18.53 16 14 C 0.06 1.93 5.11 86.33 0.44 2.37 16 15 C -0.11 -3.18 5.52 30.65 0.17 -3.01 16 16 C 0.15 3.28 2.31 45.07 0.10 3.38 16 17 H 0.10 2.13 7.58 -2.38 -0.02 2.11 16 18 N -0.69 -13.73 5.04 -446.09 -2.25 -15.98 16 19 C 0.61 14.02 7.76 86.46 0.67 14.69 16 20 O -0.55 -16.21 16.55 -4.29 -0.07 -16.28 16 21 C -0.13 -2.48 7.18 24.05 0.17 -2.31 16 22 C 0.05 0.95 11.66 83.97 0.98 1.93 16 23 N -0.53 -8.79 11.26 -315.10 -3.55 -12.34 16 24 C 0.23 2.16 13.21 130.42 1.72 3.88 16 25 O -0.19 -2.73 10.57 -7.00 -0.07 -2.81 16 26 C 0.11 1.76 3.42 30.65 0.10 1.86 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 O -0.57 -9.94 12.06 -148.98 -1.80 -11.73 16 29 C 0.02 0.36 5.12 86.33 0.44 0.81 16 30 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.39 14.89 5.76 -92.70 -0.53 14.36 16 32 H 0.13 2.79 7.99 -2.39 -0.02 2.77 16 33 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 34 H 0.06 2.48 5.78 -2.39 -0.01 2.46 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 2.07 7.80 -2.39 -0.02 2.05 16 38 H 0.42 7.04 7.91 -92.70 -0.73 6.31 16 39 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.31 -0.99 8.06 -2.91 -0.02 -1.01 16 41 H 0.40 3.96 9.08 -74.06 -0.67 3.29 16 42 H 0.11 1.27 8.01 -2.39 -0.02 1.25 16 43 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -89.27 363.45 -4.65 -93.92 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.90 Total: 35.29 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 7.25 Total: 27.53 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -10.91 Total: -132.85 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -1.98 Total: -64.43 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.53 kcal Total: -89.27 -4.65 -93.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.659 kcal (2) G-P(sol) polarization free energy of solvation -89.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds