Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47064 * 274.87953 * 3 2 1 5 5 H 1.48500 * 109.47025 * 34.88229 * 3 2 1 6 6 H 1.48500 * 109.47233 * 154.87833 * 3 2 1 7 7 C 1.38817 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 339.80961 * 7 2 1 9 9 N 1.36936 * 119.99752 * 159.80555 * 7 2 1 10 10 C 1.46964 * 120.65500 * 332.72717 * 9 7 2 11 11 C 1.53185 * 108.89104 * 233.53702 * 10 9 7 12 12 C 1.53044 * 109.31683 * 305.44666 * 11 10 9 13 13 H 1.09004 * 109.45492 * 301.34563 * 12 11 10 14 14 N 1.46493 * 109.46598 * 181.38303 * 12 11 10 15 15 C 1.34779 * 119.99814 * 84.92748 * 14 12 11 16 16 O 1.21281 * 120.00231 * 0.02562 * 15 14 12 17 17 C 1.50707 * 120.00076 * 180.02562 * 15 14 12 18 18 O 1.42901 * 109.47076 * 180.02562 * 17 15 14 19 19 C 1.35949 * 116.99715 * 179.97438 * 18 17 15 20 20 C 1.38705 * 120.02984 * 359.72825 * 19 18 17 21 21 C 1.38153 * 119.97020 * 179.79073 * 20 19 18 22 22 C 1.38453 * 120.02465 * 0.48366 * 21 20 19 23 23 F 1.35103 * 119.96719 * 179.72590 * 22 21 20 24 24 C 1.38453 * 120.06672 * 359.74160 * 22 21 20 25 25 C 1.38155 * 120.02599 * 0.02567 * 24 22 21 26 26 C 1.53046 * 109.53605 * 61.36105 * 12 11 10 27 27 H 1.08994 * 109.49778 * 58.59284 * 26 12 11 28 28 O 1.42897 * 109.49690 * 178.68729 * 26 12 11 29 29 C 1.46924 * 120.63124 * 152.91833 * 9 7 2 30 30 H 0.96999 * 119.99839 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46502 * 113.75225 * 10 9 7 32 32 H 1.09001 * 109.59506 * 353.40025 * 10 9 7 33 33 H 1.08998 * 109.49977 * 185.49317 * 11 10 9 34 34 H 1.09000 * 109.50031 * 65.39361 * 11 10 9 35 35 H 0.96997 * 120.00269 * 264.93527 * 14 12 11 36 36 H 1.08995 * 109.46759 * 300.00283 * 17 15 14 37 37 H 1.09002 * 109.46779 * 60.00156 * 17 15 14 38 38 H 1.08003 * 120.01684 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.98638 * 180.20296 * 21 20 19 40 40 H 1.07993 * 119.98948 * 180.02562 * 24 22 21 41 41 H 1.07999 * 120.01639 * 179.97438 * 25 24 22 42 42 H 0.96698 * 114.00415 * 179.83807 * 28 26 12 43 43 H 1.08999 * 109.58266 * 6.59773 * 29 9 7 44 44 H 1.08998 * 109.58538 * 246.31989 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3946 2.1059 -1.3950 5 1 1.5031 2.6206 0.8007 6 1 3.5955 1.4126 0.5944 7 6 2.0103 -1.2022 0.0005 8 1 1.5201 -2.1086 0.3238 9 7 3.3165 -1.2388 -0.4088 10 6 3.8282 -0.2527 -1.3709 11 6 4.4827 -0.9943 -2.5406 12 6 5.5446 -1.9549 -2.0003 13 1 6.2892 -1.3930 -1.4364 14 7 6.1956 -2.6418 -3.1185 15 6 7.2303 -2.0597 -3.7565 16 8 7.6226 -0.9673 -3.4047 17 6 7.8998 -2.7661 -4.9072 18 8 8.9605 -1.9531 -5.4130 19 6 9.6718 -2.4481 -6.4605 20 6 9.3583 -3.6928 -6.9861 21 6 10.0791 -4.1928 -8.0533 22 6 11.1204 -3.4563 -8.5918 23 9 11.8281 -3.9487 -9.6320 24 6 11.4375 -2.2156 -8.0653 25 6 10.7152 -1.7112 -7.0011 26 6 4.8827 -2.9865 -1.0839 27 1 4.1207 -3.5319 -1.6407 28 8 5.8700 -3.9014 -0.6042 29 6 4.2327 -2.2674 0.1023 30 1 -0.4850 0.8400 0.0004 31 1 4.5667 0.3826 -0.8819 32 1 3.0049 0.3586 -1.7407 33 1 4.9511 -0.2742 -3.2115 34 1 3.7245 -1.5585 -3.0837 35 1 5.8821 -3.5156 -3.3997 36 1 8.3043 -3.7179 -4.5632 37 1 7.1705 -2.9455 -5.6972 38 1 8.5491 -4.2697 -6.5630 39 1 9.8331 -5.1606 -8.4648 40 1 12.2497 -1.6420 -8.4866 41 1 10.9629 -0.7436 -6.5902 42 1 5.5208 -4.5832 -0.0141 43 1 3.6763 -2.9855 0.7046 44 1 5.0044 -1.7986 0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100105023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = -107.889107 kcal Electronic energy + Delta-G solvation = -28666.388228 eV Core-core repulsion = 24306.765625 eV Total energy + Delta-G solvation = -4359.622602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.17480 -40.74148 -39.78847 -38.31474 -37.31311 -35.72478 -34.55772 -32.23659 -31.74801 -30.80156 -30.02782 -29.34879 -28.10807 -25.09149 -23.59679 -22.85326 -22.70257 -21.99044 -20.55698 -19.92146 -18.84962 -17.79415 -17.68218 -17.19845 -16.70851 -16.68619 -16.44512 -16.15669 -15.86327 -15.18565 -15.04581 -14.63164 -14.53692 -14.41240 -14.09214 -14.01054 -13.53095 -13.43319 -13.34590 -12.91042 -12.75398 -12.65865 -12.54749 -12.29328 -12.06970 -11.63955 -11.34542 -11.32804 -11.24113 -11.08014 -10.25453 -10.23843 -10.08674 -9.96341 -9.75173 -9.64304 -9.57455 -8.97059 -8.72816 -8.52124 -7.13263 -6.04712 -3.43312 0.70495 0.79006 2.28652 2.49599 3.13685 3.28368 3.42144 3.45369 3.47972 3.90521 4.15960 4.22013 4.31561 4.45079 4.47087 4.61366 4.68648 4.70647 4.83423 4.88026 5.05782 5.12624 5.26431 5.31956 5.42434 5.47985 5.66186 5.66911 5.71500 5.72611 5.77191 5.92245 6.13145 6.20955 6.24163 6.31931 6.45352 6.49646 6.55161 6.72444 6.88283 7.42785 7.69087 7.84865 8.13641 8.20887 8.79892 9.59945 9.94596 11.10471 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002076 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.973936 B =13485.530508 C =14037.736048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.126 3.874 11 C -0.142 4.142 12 C 0.164 3.836 13 H 0.091 0.909 14 N -0.711 5.711 15 C 0.514 3.486 16 O -0.518 6.518 17 C 0.040 3.960 18 O -0.284 6.284 19 C 0.124 3.876 20 C -0.184 4.184 21 C -0.111 4.111 22 C 0.056 3.944 23 F -0.142 7.142 24 C -0.112 4.112 25 C -0.120 4.120 26 C 0.080 3.920 27 H 0.062 0.938 28 O -0.570 6.570 29 C 0.124 3.876 30 H 0.264 0.736 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.377 0.623 43 H 0.071 0.929 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.843 -10.815 -14.329 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.105 0.895 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.182 4.182 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.363 5.363 15 C 0.298 3.702 16 O -0.392 6.392 17 C -0.039 4.039 18 O -0.196 6.196 19 C 0.078 3.922 20 C -0.203 4.203 21 C -0.130 4.130 22 C 0.036 3.964 23 F -0.121 7.121 24 C -0.130 4.130 25 C -0.139 4.139 26 C 0.019 3.981 27 H 0.080 0.920 28 O -0.375 6.375 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.401 -9.380 -14.332 25.880 hybrid contribution -0.200 -0.167 -0.073 0.271 sum 19.200 -9.547 -14.405 25.832 Atomic orbital electron populations 1.69822 1.05723 1.26758 1.52396 1.25265 0.95248 0.97697 0.99097 0.86979 0.80221 0.84502 0.77178 1.21475 1.22948 1.19276 1.18875 0.84382 0.94875 1.41352 0.89537 1.44321 1.08443 1.32487 1.47410 1.21399 0.97411 0.92070 0.89131 1.22445 0.97350 0.98567 0.99852 1.20998 0.94773 0.92723 0.85469 0.89088 1.45875 1.33378 1.22414 1.34623 1.19883 0.80490 0.86402 0.83409 1.90768 1.63189 1.20030 1.65253 1.22560 0.90041 0.94645 0.96642 1.86207 1.44096 1.44272 1.45021 1.19102 0.92391 0.92497 0.88176 1.21156 1.03365 0.96190 0.99560 1.20940 0.94864 1.00568 0.96629 1.17592 0.94832 0.94624 0.89323 1.91495 1.77339 1.87723 1.55538 1.20981 1.00813 0.94599 0.96641 1.20335 0.95046 1.01355 0.97124 1.22730 0.89265 0.90023 0.96109 0.91963 1.86466 1.37632 1.44814 1.68561 1.21545 0.93195 0.92404 0.93200 0.92601 0.94961 0.90359 0.91335 0.91179 0.76678 0.88786 0.88805 0.84299 0.84354 0.83936 0.83799 0.77592 0.91105 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.97 55.49 0.78 -26.13 16 2 C 0.03 0.74 5.24 -17.43 -0.09 0.65 16 3 Si 0.88 21.98 24.35 -169.99 -4.14 17.84 16 4 H -0.29 -6.96 6.70 56.52 0.38 -6.58 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.60 6.45 56.52 0.36 -6.24 16 7 C -0.27 -7.09 10.04 -15.06 -0.15 -7.25 16 8 H 0.09 2.43 8.05 -52.49 -0.42 2.01 16 9 N -0.60 -13.49 2.78 -172.30 -0.48 -13.97 16 10 C 0.13 2.68 4.19 -3.69 -0.02 2.66 16 11 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 12 C 0.16 2.57 2.12 -67.89 -0.14 2.43 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 14 N -0.71 -8.76 4.92 -53.76 -0.26 -9.03 16 15 C 0.51 6.91 7.87 -10.98 -0.09 6.82 16 16 O -0.52 -9.47 16.16 -14.35 -0.23 -9.70 16 17 C 0.04 0.37 5.22 36.01 0.19 0.55 16 18 O -0.28 -3.32 9.67 -39.49 -0.38 -3.70 16 19 C 0.12 1.19 6.69 -39.24 -0.26 0.93 16 20 C -0.18 -1.39 9.04 -39.44 -0.36 -1.75 16 21 C -0.11 -0.83 10.02 -39.53 -0.40 -1.22 16 22 C 0.06 0.47 7.30 -39.42 -0.29 0.19 16 23 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 24 C -0.11 -0.87 10.02 -39.53 -0.40 -1.27 16 25 C -0.12 -1.05 9.98 -39.44 -0.39 -1.44 16 26 C 0.08 1.17 3.15 -26.61 -0.08 1.09 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -7.21 13.16 -35.23 -0.46 -7.67 16 29 C 0.12 2.24 6.14 -3.71 -0.02 2.21 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.03 0.70 6.98 -51.93 -0.36 0.34 16 32 H 0.08 1.82 4.51 -51.93 -0.23 1.59 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 36 H 0.09 0.61 7.65 -51.93 -0.40 0.21 16 37 H 0.09 0.60 7.68 -51.93 -0.40 0.20 16 38 H 0.14 0.71 6.30 -52.48 -0.33 0.38 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.38 3.26 9.08 45.56 0.41 3.67 16 43 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -34.36 364.59 -7.34 -41.70 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.04 Total: 4.45 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.65 Total: 1.99 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.03 Total: -49.13 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.08 Total: -21.08 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.36 -7.34 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100105023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.185 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds