Wall clock time and date at job start Tue Mar 31 2020 20:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47064 * 274.87953 * 3 2 1 5 5 H 1.48500 * 109.47025 * 34.88229 * 3 2 1 6 6 H 1.48500 * 109.47233 * 154.87833 * 3 2 1 7 7 C 1.38817 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 339.80961 * 7 2 1 9 9 N 1.36936 * 119.99752 * 159.80555 * 7 2 1 10 10 C 1.46964 * 120.65500 * 332.72717 * 9 7 2 11 11 C 1.53185 * 108.89104 * 233.53702 * 10 9 7 12 12 C 1.53044 * 109.31683 * 305.44666 * 11 10 9 13 13 H 1.09004 * 109.45492 * 301.34563 * 12 11 10 14 14 N 1.46493 * 109.46598 * 181.38303 * 12 11 10 15 15 C 1.34779 * 119.99814 * 84.92748 * 14 12 11 16 16 O 1.21281 * 120.00231 * 0.02562 * 15 14 12 17 17 C 1.50707 * 120.00076 * 180.02562 * 15 14 12 18 18 O 1.42901 * 109.47076 * 180.02562 * 17 15 14 19 19 C 1.35949 * 116.99715 * 179.97438 * 18 17 15 20 20 C 1.38705 * 120.02984 * 359.72825 * 19 18 17 21 21 C 1.38153 * 119.97020 * 179.79073 * 20 19 18 22 22 C 1.38453 * 120.02465 * 0.48366 * 21 20 19 23 23 F 1.35103 * 119.96719 * 179.72590 * 22 21 20 24 24 C 1.38453 * 120.06672 * 359.74160 * 22 21 20 25 25 C 1.38155 * 120.02599 * 0.02567 * 24 22 21 26 26 C 1.53046 * 109.53605 * 61.36105 * 12 11 10 27 27 H 1.08994 * 109.49778 * 58.59284 * 26 12 11 28 28 O 1.42897 * 109.49690 * 178.68729 * 26 12 11 29 29 C 1.46924 * 120.63124 * 152.91833 * 9 7 2 30 30 H 0.96999 * 119.99839 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46502 * 113.75225 * 10 9 7 32 32 H 1.09001 * 109.59506 * 353.40025 * 10 9 7 33 33 H 1.08998 * 109.49977 * 185.49317 * 11 10 9 34 34 H 1.09000 * 109.50031 * 65.39361 * 11 10 9 35 35 H 0.96997 * 120.00269 * 264.93527 * 14 12 11 36 36 H 1.08995 * 109.46759 * 300.00283 * 17 15 14 37 37 H 1.09002 * 109.46779 * 60.00156 * 17 15 14 38 38 H 1.08003 * 120.01684 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.98638 * 180.20296 * 21 20 19 40 40 H 1.07993 * 119.98948 * 180.02562 * 24 22 21 41 41 H 1.07999 * 120.01639 * 179.97438 * 25 24 22 42 42 H 0.96698 * 114.00415 * 179.83807 * 28 26 12 43 43 H 1.08999 * 109.58266 * 6.59773 * 29 9 7 44 44 H 1.08998 * 109.58538 * 246.31989 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3946 2.1059 -1.3950 5 1 1.5031 2.6206 0.8007 6 1 3.5955 1.4126 0.5944 7 6 2.0103 -1.2022 0.0005 8 1 1.5201 -2.1086 0.3238 9 7 3.3165 -1.2388 -0.4088 10 6 3.8282 -0.2527 -1.3709 11 6 4.4827 -0.9943 -2.5406 12 6 5.5446 -1.9549 -2.0003 13 1 6.2892 -1.3930 -1.4364 14 7 6.1956 -2.6418 -3.1185 15 6 7.2303 -2.0597 -3.7565 16 8 7.6226 -0.9673 -3.4047 17 6 7.8998 -2.7661 -4.9072 18 8 8.9605 -1.9531 -5.4130 19 6 9.6718 -2.4481 -6.4605 20 6 9.3583 -3.6928 -6.9861 21 6 10.0791 -4.1928 -8.0533 22 6 11.1204 -3.4563 -8.5918 23 9 11.8281 -3.9487 -9.6320 24 6 11.4375 -2.2156 -8.0653 25 6 10.7152 -1.7112 -7.0011 26 6 4.8827 -2.9865 -1.0839 27 1 4.1207 -3.5319 -1.6407 28 8 5.8700 -3.9014 -0.6042 29 6 4.2327 -2.2674 0.1023 30 1 -0.4850 0.8400 0.0004 31 1 4.5667 0.3826 -0.8819 32 1 3.0049 0.3586 -1.7407 33 1 4.9511 -0.2742 -3.2115 34 1 3.7245 -1.5585 -3.0837 35 1 5.8821 -3.5156 -3.3997 36 1 8.3043 -3.7179 -4.5632 37 1 7.1705 -2.9455 -5.6972 38 1 8.5491 -4.2697 -6.5630 39 1 9.8331 -5.1606 -8.4648 40 1 12.2497 -1.6420 -8.4866 41 1 10.9629 -0.7436 -6.5902 42 1 5.5208 -4.5832 -0.0141 43 1 3.6763 -2.9855 0.7046 44 1 5.0044 -1.7986 0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100105023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:42 Heat of formation + Delta-G solvation = -134.046025 kcal Electronic energy + Delta-G solvation = -28667.522477 eV Core-core repulsion = 24306.765625 eV Total energy + Delta-G solvation = -4360.756852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.82552 -41.56216 -40.79746 -39.52248 -38.07084 -37.11479 -35.82002 -34.05807 -32.44546 -32.12012 -30.99854 -30.57535 -29.02907 -26.71899 -24.34416 -24.28043 -23.74895 -23.13078 -21.65956 -21.30108 -19.49599 -19.06936 -18.45584 -18.34448 -18.03190 -17.60437 -17.38403 -17.28354 -16.70299 -16.52781 -16.20272 -15.73601 -15.68236 -15.51004 -15.28303 -14.93303 -14.68948 -14.59652 -14.29856 -14.03731 -13.99671 -13.89471 -13.71896 -13.34204 -13.30466 -13.19935 -12.95525 -12.67470 -12.15849 -11.96399 -11.91524 -11.89474 -11.64895 -11.46637 -11.16141 -10.99257 -10.67825 -10.20069 -10.15064 -9.16052 -9.02312 -8.19800 -5.52970 0.14625 0.17334 1.27730 1.39910 1.46318 1.47585 1.50276 2.37717 2.54703 2.58166 2.91430 3.11131 3.31826 3.34307 3.51777 3.73704 3.80019 3.81637 3.98810 4.01248 4.09271 4.12993 4.17347 4.23073 4.31612 4.31756 4.53638 4.56844 4.68528 4.78513 4.85517 4.89529 4.89760 5.03199 5.10205 5.13422 5.19098 5.23626 5.37783 5.66006 5.81017 6.09461 6.23318 6.50963 6.79296 6.92344 7.17733 7.55544 7.95412 8.99067 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002076 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.973936 B =13485.530508 C =14037.736048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.310 1.310 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.613 5.613 10 C 0.122 3.878 11 C -0.129 4.129 12 C 0.169 3.831 13 H 0.064 0.936 14 N -0.696 5.696 15 C 0.510 3.490 16 O -0.574 6.574 17 C 0.044 3.956 18 O -0.315 6.315 19 C 0.108 3.892 20 C -0.178 4.178 21 C -0.110 4.110 22 C 0.039 3.961 23 F -0.150 7.150 24 C -0.112 4.112 25 C -0.135 4.135 26 C 0.102 3.898 27 H 0.076 0.924 28 O -0.568 6.568 29 C 0.118 3.882 30 H 0.262 0.738 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.398 0.602 43 H 0.079 0.921 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.312 -13.155 -15.704 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.223 4.223 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.239 1.239 6 H -0.190 1.190 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.169 4.169 12 C 0.064 3.936 13 H 0.083 0.917 14 N -0.349 5.349 15 C 0.297 3.703 16 O -0.453 6.453 17 C -0.034 4.034 18 O -0.229 6.229 19 C 0.062 3.938 20 C -0.196 4.196 21 C -0.128 4.128 22 C 0.020 3.980 23 F -0.128 7.128 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.040 3.960 27 H 0.094 0.906 28 O -0.375 6.375 29 C -0.008 4.008 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.257 0.743 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.248 0.752 43 H 0.097 0.903 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 20.912 -11.795 -15.724 28.700 hybrid contribution -0.579 0.450 0.378 0.825 sum 20.333 -11.345 -15.347 27.886 Atomic orbital electron populations 1.69923 1.07056 1.27150 1.55429 1.25790 0.95737 1.00402 1.00395 0.86119 0.78883 0.81338 0.77324 1.20612 1.23874 1.19033 1.18881 0.85929 0.93799 1.38886 0.91574 1.44406 1.07782 1.33605 1.48088 1.21354 0.96608 0.92188 0.90253 1.22241 0.97808 0.98760 0.98111 1.20655 0.93650 0.92820 0.86520 0.91727 1.45606 1.32889 1.22926 1.33435 1.20687 0.80013 0.85770 0.83875 1.90750 1.64802 1.22690 1.67041 1.22684 0.90398 0.94501 0.95823 1.86154 1.45029 1.45727 1.45955 1.19297 0.92699 0.93570 0.88207 1.21429 1.03727 0.95385 0.99062 1.21230 0.94081 1.01259 0.96276 1.17860 0.95472 0.95149 0.89503 1.91477 1.77621 1.87820 1.55923 1.21135 1.01017 0.94672 0.96248 1.20474 0.95537 1.01680 0.97653 1.22266 0.89480 0.89847 0.94366 0.90582 1.86444 1.36994 1.44942 1.69139 1.21766 0.92534 0.91647 0.94888 0.92883 0.95634 0.92543 0.91347 0.90312 0.74296 0.85381 0.85349 0.81375 0.82140 0.82460 0.83904 0.75159 0.90284 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.78 13.97 21.65 0.30 -57.48 16 2 C -0.03 -1.57 5.24 84.86 0.44 -1.13 16 3 Si 0.93 46.29 24.35 68.60 1.67 47.96 16 4 H -0.28 -13.30 6.70 99.48 0.67 -12.63 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 6 H -0.27 -12.87 6.45 99.48 0.64 -12.23 16 7 C -0.25 -13.11 10.04 84.03 0.84 -12.26 16 8 H 0.07 3.76 8.05 -2.91 -0.02 3.73 16 9 N -0.61 -27.07 2.78 -699.02 -1.94 -29.01 16 10 C 0.12 5.12 4.19 86.35 0.36 5.48 16 11 C -0.13 -4.31 5.65 30.67 0.17 -4.14 16 12 C 0.17 4.95 2.12 45.02 0.10 5.05 16 13 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 14 N -0.70 -15.01 4.92 -442.39 -2.18 -17.19 16 15 C 0.51 12.54 7.87 87.66 0.69 13.23 16 16 O -0.57 -20.73 16.16 16.00 0.26 -20.47 16 17 C 0.04 0.64 5.22 71.24 0.37 1.02 16 18 O -0.32 -6.80 9.67 -73.93 -0.71 -7.51 16 19 C 0.11 1.85 6.69 22.49 0.15 2.00 16 20 C -0.18 -2.07 9.04 22.36 0.20 -1.87 16 21 C -0.11 -1.31 10.02 22.30 0.22 -1.09 16 22 C 0.04 0.60 7.30 22.37 0.16 0.76 16 23 F -0.15 -2.57 17.27 44.97 0.78 -1.79 16 24 C -0.11 -1.62 10.02 22.30 0.22 -1.40 16 25 C -0.13 -2.25 9.98 22.36 0.22 -2.03 16 26 C 0.10 2.70 3.15 30.67 0.10 2.79 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 28 O -0.57 -12.25 13.16 -148.98 -1.96 -14.21 16 29 C 0.12 4.05 6.14 86.36 0.53 4.58 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.03 1.11 6.98 -2.39 -0.02 1.09 16 32 H 0.06 2.62 4.51 -2.39 -0.01 2.61 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.42 5.77 8.60 -92.71 -0.80 4.97 16 36 H 0.13 1.03 7.65 -2.39 -0.02 1.01 16 37 H 0.13 1.02 7.68 -2.39 -0.02 1.00 16 38 H 0.17 0.85 6.30 -2.91 -0.02 0.83 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.40 5.23 9.08 -74.06 -0.67 4.56 16 43 H 0.08 2.57 7.93 -2.39 -0.02 2.55 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.19 364.59 0.49 -76.70 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.52 Total: 12.00 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.79 Total: 11.00 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -3.82 Total: -103.68 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -2.42 Total: -42.20 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -77.19 0.49 -76.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100105023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.343 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds