Wall clock time and date at job start Tue Mar 31 2020 20:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47296 * 270.00053 * 3 2 1 5 5 H 1.48500 * 109.47014 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.46839 * 149.99884 * 3 2 1 7 7 C 1.38813 * 119.99456 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99203 * 197.36342 * 7 2 1 9 9 N 1.36934 * 120.00710 * 17.36790 * 7 2 1 10 10 C 1.46927 * 120.63113 * 207.66501 * 9 7 2 11 11 C 1.53188 * 108.77392 * 233.62689 * 10 9 7 12 12 C 1.53046 * 109.31015 * 305.36388 * 11 10 9 13 13 H 1.09004 * 109.44717 * 181.37632 * 12 11 10 14 14 N 1.46492 * 109.46209 * 301.34250 * 12 11 10 15 15 C 1.34772 * 120.00447 * 275.07073 * 14 12 11 16 16 O 1.21288 * 119.99919 * 359.97438 * 15 14 12 17 17 C 1.50702 * 120.00444 * 179.97438 * 15 14 12 18 18 O 1.42894 * 109.47226 * 180.02562 * 17 15 14 19 19 C 1.35951 * 117.00120 * 179.97438 * 18 17 15 20 20 C 1.38706 * 120.02624 * 359.72571 * 19 18 17 21 21 C 1.38151 * 119.96849 * 179.75013 * 20 19 18 22 22 C 1.38458 * 120.02909 * 0.51910 * 21 20 19 23 23 F 1.35097 * 119.96905 * 179.72397 * 22 21 20 24 24 C 1.38453 * 120.05762 * 359.75625 * 22 21 20 25 25 C 1.38148 * 120.03352 * 359.97000 * 24 22 21 26 26 C 1.53040 * 109.53851 * 61.37123 * 12 11 10 27 27 H 1.08996 * 109.50334 * 58.61237 * 26 12 11 28 28 O 1.42900 * 109.49656 * 178.68308 * 26 12 11 29 29 C 1.46926 * 120.62533 * 27.67894 * 9 7 2 30 30 H 0.96996 * 119.99489 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58399 * 353.41316 * 10 9 7 32 32 H 1.09004 * 109.58422 * 113.83977 * 10 9 7 33 33 H 1.08998 * 109.50114 * 185.41475 * 11 10 9 34 34 H 1.09000 * 109.49826 * 65.31710 * 11 10 9 35 35 H 0.97003 * 119.99905 * 95.07271 * 14 12 11 36 36 H 1.09002 * 109.47046 * 300.00036 * 17 15 14 37 37 H 1.08993 * 109.47068 * 59.99909 * 17 15 14 38 38 H 1.07999 * 120.01905 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.98617 * 180.29927 * 21 20 19 40 40 H 1.08000 * 119.98490 * 179.97438 * 24 22 21 41 41 H 1.07995 * 120.01395 * 180.02562 * 25 24 22 42 42 H 0.96700 * 113.99869 * 179.97438 * 28 26 12 43 43 H 1.08994 * 109.59028 * 6.59033 * 29 9 7 44 44 H 1.09001 * 109.58667 * 246.15582 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2797 9 7 1.3724 -2.3613 -0.3529 10 6 1.8196 -3.6548 0.1815 11 6 2.0753 -4.6098 -0.9885 12 6 0.8198 -4.6900 -1.8601 13 1 0.9909 -5.3878 -2.6798 14 7 -0.3080 -5.1561 -1.0497 15 6 -0.5060 -6.4766 -0.8665 16 8 0.2493 -7.2791 -1.3731 17 6 -1.6659 -6.9561 -0.0324 18 8 -1.6620 -8.3844 0.0126 19 6 -2.6500 -8.9820 0.7301 20 6 -3.5995 -8.2089 1.3818 21 6 -4.6060 -8.8176 2.1064 22 6 -4.6609 -10.1985 2.1911 23 9 -5.6424 -10.7923 2.9046 24 6 -3.7104 -10.9712 1.5459 25 6 -2.7061 -10.3653 0.8159 26 6 0.5017 -3.3049 -2.4279 27 1 1.3501 -2.9471 -3.0112 28 8 -0.6528 -3.3867 -3.2661 29 6 0.2281 -2.3349 -1.2741 30 1 -0.4849 0.8401 -0.0004 31 1 2.7401 -3.5171 0.7488 32 1 1.0471 -4.0691 0.8294 33 1 2.3147 -5.6010 -0.6035 34 1 2.9092 -4.2395 -1.5849 35 1 -0.9123 -4.5144 -0.6448 36 1 -1.5738 -6.5609 0.9793 37 1 -2.5996 -6.6087 -0.4745 38 1 -3.5541 -7.1316 1.3198 39 1 -5.3482 -8.2160 2.6099 40 1 -3.7541 -12.0482 1.6131 41 1 -1.9651 -10.9684 0.3124 42 1 -0.9129 -2.5431 -3.6607 43 1 0.0986 -1.3266 -1.6672 44 1 -0.6741 -2.6418 -0.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100105024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:46 Heat of formation + Delta-G solvation = -133.429577 kcal Electronic energy + Delta-G solvation = -29101.449258 eV Core-core repulsion = 24740.719138 eV Total energy + Delta-G solvation = -4360.730120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.82478 -41.58684 -40.83277 -39.34754 -38.03623 -36.84345 -35.68202 -33.78605 -32.34893 -31.72386 -30.78579 -30.43382 -28.86796 -27.07797 -24.36775 -23.98137 -23.51694 -23.24678 -21.99215 -20.32431 -19.46194 -18.96560 -18.42228 -18.36439 -18.06195 -17.45989 -17.34785 -16.80925 -16.63714 -16.51321 -15.87350 -15.76557 -15.65228 -15.44950 -15.29099 -14.92749 -14.67168 -14.41829 -14.28554 -13.98830 -13.87278 -13.54760 -13.36552 -13.32638 -13.21657 -12.85923 -12.68673 -12.66238 -12.16435 -11.98917 -11.95516 -11.90017 -11.81718 -11.27001 -11.00180 -10.85040 -10.57311 -10.19999 -10.08451 -9.16099 -8.69933 -7.89381 -5.34022 0.14637 0.17355 1.48269 1.50800 1.51639 1.51974 1.58427 2.50315 2.54712 2.63138 3.13911 3.27630 3.31649 3.53702 3.67080 3.75478 3.80297 3.93354 4.01051 4.09031 4.15440 4.17085 4.27677 4.31578 4.37692 4.47251 4.56008 4.71873 4.89029 4.90010 4.96424 5.09626 5.10712 5.12994 5.17872 5.19900 5.32985 5.48696 5.60901 5.66198 5.67502 6.22273 6.36074 6.49669 6.83894 7.13536 7.15282 7.81528 8.32283 9.16011 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002311 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.463515 B =12114.667948 C =12815.603884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.042 4.042 3 Si 0.961 3.039 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.074 0.926 14 N -0.696 5.696 15 C 0.515 3.485 16 O -0.570 6.570 17 C 0.042 3.958 18 O -0.310 6.310 19 C 0.107 3.893 20 C -0.182 4.182 21 C -0.111 4.111 22 C 0.041 3.959 23 F -0.149 7.149 24 C -0.109 4.109 25 C -0.130 4.130 26 C 0.084 3.916 27 H 0.061 0.939 28 O -0.573 6.573 29 C 0.156 3.844 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.410 0.590 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.392 0.608 43 H 0.065 0.935 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -15.008 0.878 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.238 4.238 3 Si 0.790 3.210 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.021 3.979 11 C -0.173 4.173 12 C 0.065 3.935 13 H 0.092 0.908 14 N -0.349 5.349 15 C 0.301 3.699 16 O -0.449 6.449 17 C -0.036 4.036 18 O -0.223 6.223 19 C 0.061 3.939 20 C -0.201 4.201 21 C -0.130 4.130 22 C 0.022 3.978 23 F -0.127 7.127 24 C -0.128 4.128 25 C -0.149 4.149 26 C 0.023 3.977 27 H 0.079 0.921 28 O -0.380 6.380 29 C 0.030 3.970 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.166 0.834 42 H 0.241 0.759 43 H 0.083 0.917 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.670 -16.168 0.615 17.906 hybrid contribution -0.141 2.057 0.255 2.077 sum -7.811 -14.112 0.870 16.153 Atomic orbital electron populations 1.70125 1.06210 1.25917 1.54970 1.25657 0.96041 1.01002 1.01105 0.85365 0.78121 0.80020 0.77495 1.21241 1.22350 1.19828 1.19458 0.93034 0.85838 1.40976 0.91676 1.44170 1.35910 1.02115 1.50525 1.20979 0.97785 0.85438 0.93679 1.22268 0.96738 0.99907 0.98390 1.20716 0.86070 0.93946 0.92721 0.90775 1.45768 1.30623 1.06279 1.52209 1.20455 0.86007 0.82465 0.80954 1.90700 1.48463 1.54921 1.50818 1.22614 0.98583 0.80000 1.02359 1.86135 1.47729 1.20571 1.67835 1.19332 0.88601 0.93123 0.92817 1.21400 0.95884 1.01697 1.01072 1.21198 0.99543 0.92829 0.99439 1.17828 0.89737 0.91757 0.98508 1.91474 1.60507 1.84306 1.76458 1.21155 0.93200 1.01762 0.96674 1.20482 1.00671 0.91550 1.02194 1.22598 0.88255 0.94978 0.91888 0.92078 1.86386 1.47508 1.38071 1.66007 1.21234 0.88732 0.97940 0.89109 0.93961 0.92628 0.95903 0.91034 0.90699 0.75273 0.86276 0.86066 0.82250 0.82485 0.82028 0.83380 0.75864 0.91670 0.96453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.45 11.19 21.65 0.24 -49.21 16 2 C -0.04 -2.14 4.91 84.86 0.42 -1.72 16 3 Si 0.96 41.83 29.59 68.60 2.03 43.86 16 4 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.26 -13.23 9.58 84.03 0.81 -12.43 16 8 H 0.07 3.26 7.89 -2.91 -0.02 3.23 16 9 N -0.60 -26.82 2.99 -699.08 -2.09 -28.91 16 10 C 0.15 5.51 6.26 86.36 0.54 6.06 16 11 C -0.13 -4.36 5.77 30.67 0.18 -4.19 16 12 C 0.17 5.55 2.47 45.02 0.11 5.66 16 13 H 0.07 2.57 7.58 -2.38 -0.02 2.55 16 14 N -0.70 -20.35 4.15 -442.40 -1.84 -22.19 16 15 C 0.51 15.15 7.87 87.66 0.69 15.84 16 16 O -0.57 -21.45 16.16 15.98 0.26 -21.19 16 17 C 0.04 0.89 5.22 71.24 0.37 1.26 16 18 O -0.31 -7.77 9.67 -73.96 -0.72 -8.49 16 19 C 0.11 2.20 6.69 22.49 0.15 2.35 16 20 C -0.18 -3.01 9.04 22.36 0.20 -2.81 16 21 C -0.11 -1.78 10.02 22.30 0.22 -1.56 16 22 C 0.04 0.73 7.30 22.37 0.16 0.89 16 23 F -0.15 -2.88 17.27 44.97 0.78 -2.11 16 24 C -0.11 -1.77 10.02 22.30 0.22 -1.55 16 25 C -0.13 -2.42 9.98 22.36 0.22 -2.19 16 26 C 0.08 2.83 3.36 30.68 0.10 2.93 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 O -0.57 -17.32 13.21 -148.98 -1.97 -19.29 16 29 C 0.16 6.39 4.64 86.37 0.40 6.79 16 30 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 31 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 32 H 0.02 0.85 7.74 -2.38 -0.02 0.83 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.41 11.37 6.87 -92.71 -0.64 10.73 16 36 H 0.12 1.91 7.65 -2.39 -0.02 1.89 16 37 H 0.12 1.87 7.67 -2.39 -0.02 1.85 16 38 H 0.16 1.91 6.30 -2.91 -0.02 1.89 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 42 H 0.39 9.28 9.08 -74.06 -0.67 8.60 16 43 H 0.06 3.06 6.03 -2.39 -0.01 3.05 16 44 H 0.02 0.73 6.64 -2.39 -0.02 0.72 16 Total: -1.00 -65.65 366.96 1.24 -64.41 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.25 Total: 27.78 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.80 Total: 15.34 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -3.69 Total: -100.31 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.42 Total: -48.96 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.65 1.24 -64.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100105024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.023 kcal (2) G-P(sol) polarization free energy of solvation -65.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds