Wall clock time and date at job start Tue Mar 31 2020 20:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48503 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46788 * 299.99592 * 3 2 1 6 6 H 1.48492 * 109.47254 * 59.99845 * 3 2 1 7 7 C 1.38821 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99661 * 197.36915 * 7 2 1 9 9 N 1.36936 * 119.99703 * 17.37126 * 7 2 1 10 10 C 1.46923 * 120.63454 * 27.67193 * 9 7 2 11 11 C 1.53188 * 108.77761 * 126.41172 * 10 9 7 12 12 C 1.53034 * 109.31461 * 54.63198 * 11 10 9 13 13 H 1.09005 * 109.46144 * 178.62397 * 12 11 10 14 14 N 1.46505 * 109.45779 * 58.65851 * 12 11 10 15 15 C 1.34777 * 120.00194 * 84.97063 * 14 12 11 16 16 O 1.21284 * 119.99982 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00010 * 179.97438 * 15 14 12 18 18 O 1.42896 * 109.47068 * 180.02562 * 17 15 14 19 19 C 1.35948 * 116.99832 * 180.02562 * 18 17 15 20 20 C 1.38710 * 120.02702 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.96821 * 179.69475 * 20 19 18 22 22 C 1.38458 * 120.02933 * 0.28171 * 21 20 19 23 23 F 1.35101 * 119.97095 * 179.97438 * 22 21 20 24 24 C 1.38450 * 120.06153 * 359.97438 * 22 21 20 25 25 C 1.38153 * 120.03069 * 359.97438 * 24 22 21 26 26 C 1.53042 * 109.53000 * 298.64309 * 12 11 10 27 27 H 1.08995 * 109.49371 * 301.40754 * 26 12 11 28 28 O 1.42898 * 109.49618 * 181.30868 * 26 12 11 29 29 C 1.46925 * 120.62866 * 207.68859 * 9 7 2 30 30 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58672 * 6.62152 * 10 9 7 32 32 H 1.09003 * 109.70420 * 246.26932 * 10 9 7 33 33 H 1.08999 * 109.49719 * 294.68062 * 11 10 9 34 34 H 1.09001 * 109.52566 * 174.60500 * 11 10 9 35 35 H 0.97003 * 119.99825 * 264.96957 * 14 12 11 36 36 H 1.09006 * 109.46802 * 60.00440 * 17 15 14 37 37 H 1.08997 * 109.47020 * 300.00493 * 17 15 14 38 38 H 1.07997 * 120.01450 * 359.96940 * 20 19 18 39 39 H 1.07994 * 119.98718 * 180.24980 * 21 20 19 40 40 H 1.08005 * 119.98764 * 179.97438 * 24 22 21 41 41 H 1.08002 * 120.01835 * 180.02562 * 25 24 22 42 42 H 0.96700 * 113.99443 * 179.97438 * 28 26 12 43 43 H 1.09004 * 109.58525 * 353.37561 * 29 9 7 44 44 H 1.08996 * 109.58709 * 113.80029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 0.2280 -2.3349 -1.2740 11 6 0.5009 -3.3054 -2.4275 12 6 0.8187 -4.6903 -1.8593 13 1 0.9894 -5.3886 -2.6787 14 7 -0.3092 -5.1557 -1.0484 15 6 -1.3507 -5.7773 -1.6362 16 8 -1.3539 -5.9518 -2.8364 17 6 -2.5106 -6.2566 -0.8020 18 8 -3.4803 -6.8787 -1.6474 19 6 -4.5977 -7.3690 -1.0480 20 6 -5.5797 -7.9860 -1.8090 21 6 -6.7117 -8.4894 -1.1978 22 6 -6.8690 -8.3732 0.1729 23 9 -7.9768 -8.8655 0.7692 24 6 -5.8921 -7.7530 0.9329 25 6 -4.7585 -7.2495 0.3245 26 6 2.0743 -4.6100 -0.9879 27 1 2.9081 -4.2402 -1.5846 28 8 2.3878 -5.9093 -0.4824 29 6 1.8192 -3.6547 0.1818 30 1 -0.4850 0.8400 -0.0004 31 1 0.0988 -1.3267 -1.6676 32 1 -0.6757 -2.6397 -0.7462 33 1 1.3496 -2.9479 -3.0106 34 1 -0.3795 -3.3678 -3.0671 35 1 -0.3065 -5.0165 -0.0884 36 1 -2.9651 -5.4082 -0.2903 37 1 -2.1553 -6.9773 -0.0656 38 1 -5.4573 -8.0766 -2.8782 39 1 -7.4746 -8.9734 -1.7895 40 1 -6.0162 -7.6626 2.0020 41 1 -3.9963 -6.7661 0.9177 42 1 3.1746 -5.9334 0.0794 43 1 2.7399 -3.5173 0.7488 44 1 1.0467 -4.0685 0.8299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100105025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:52 Heat of formation + Delta-G solvation = -112.165724 kcal Electronic energy + Delta-G solvation = -29109.311060 eV Core-core repulsion = 24749.503009 eV Total energy + Delta-G solvation = -4359.808051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.04619 -40.57456 -39.69686 -38.09846 -37.10529 -35.51430 -34.13835 -31.97493 -31.57312 -30.59553 -29.87000 -28.85533 -27.76217 -25.34744 -23.50482 -22.63772 -22.33954 -21.93768 -20.81321 -18.93868 -18.57208 -17.67324 -17.56122 -17.10752 -16.61441 -16.49958 -16.32828 -15.73853 -15.41889 -15.02727 -14.92271 -14.55247 -14.33028 -14.28436 -13.93451 -13.79636 -13.43101 -13.33709 -13.25042 -12.84232 -12.57081 -12.50285 -12.25283 -12.07734 -11.74566 -11.26313 -11.17553 -11.13403 -10.96054 -10.75105 -10.43259 -10.28267 -10.02776 -9.92285 -9.63637 -9.50897 -9.49696 -8.75461 -8.58978 -8.36649 -6.86051 -5.94139 -3.38304 0.85271 0.93746 2.49812 2.73079 3.28437 3.28505 3.37107 3.38375 3.66818 4.04645 4.28580 4.36642 4.44265 4.47259 4.67892 4.81726 4.89194 4.93723 5.03566 5.20658 5.23097 5.27825 5.37734 5.49538 5.57177 5.61632 5.81627 5.85714 5.87490 5.93153 5.97224 6.15947 6.35848 6.38819 6.45258 6.55765 6.59807 6.80473 7.05230 7.18736 7.50919 7.65363 7.69278 7.83491 8.28198 8.37086 9.04025 9.66290 10.20976 11.13999 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.002417 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.881339 B =11581.301302 C =12499.613860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.154 4.154 12 C 0.169 3.831 13 H 0.081 0.919 14 N -0.700 5.700 15 C 0.517 3.483 16 O -0.527 6.527 17 C 0.039 3.961 18 O -0.284 6.284 19 C 0.126 3.874 20 C -0.121 4.121 21 C -0.112 4.112 22 C 0.054 3.946 23 F -0.143 7.143 24 C -0.110 4.110 25 C -0.183 4.183 26 C 0.075 3.925 27 H 0.068 0.932 28 O -0.571 6.571 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.375 0.625 43 H 0.060 0.940 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -15.137 1.169 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.195 4.195 12 C 0.064 3.936 13 H 0.099 0.901 14 N -0.353 5.353 15 C 0.301 3.699 16 O -0.403 6.403 17 C -0.040 4.040 18 O -0.196 6.196 19 C 0.080 3.920 20 C -0.140 4.140 21 C -0.131 4.131 22 C 0.035 3.965 23 F -0.122 7.122 24 C -0.129 4.129 25 C -0.202 4.202 26 C 0.014 3.986 27 H 0.086 0.914 28 O -0.376 6.376 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.221 0.779 43 H 0.078 0.922 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.725 -15.287 -0.221 17.129 hybrid contribution 0.719 1.168 1.261 1.863 sum -7.006 -14.119 1.040 15.796 Atomic orbital electron populations 1.70031 1.05307 1.25695 1.53197 1.25054 0.95303 0.98551 1.00418 0.86213 0.79357 0.83726 0.77379 1.20206 1.21416 1.21654 1.19191 0.92747 0.84615 1.42334 0.91497 1.44022 1.35939 1.00903 1.50242 1.20792 0.88421 0.98507 0.87690 1.22606 1.01699 0.94657 1.00505 1.20865 0.83360 0.96517 0.92814 0.90143 1.45766 1.19292 1.58414 1.11832 1.19795 0.83163 0.78503 0.88415 1.90723 1.79028 1.56044 1.14515 1.22570 0.89144 0.98962 0.93302 1.86188 1.27085 1.71220 1.35089 1.19111 0.87294 0.94361 0.91260 1.20310 0.92211 1.00556 1.00915 1.20953 0.98509 1.00800 0.92859 1.17582 0.85440 1.02156 0.91367 1.91487 1.50703 1.85973 1.84026 1.20944 0.93049 0.98202 1.00723 1.21196 1.00035 1.05289 0.93673 1.22751 0.96101 0.83007 0.96695 0.91399 1.86475 1.50549 1.30262 1.70289 1.21536 0.98526 0.87716 0.93141 0.93496 0.89142 0.96106 0.91299 0.91736 0.76117 0.88585 0.88897 0.83877 0.84038 0.84366 0.84188 0.77890 0.92181 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 11.19 55.49 0.62 -23.98 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.58 9.59 -15.06 -0.14 -6.72 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.22 2.99 -172.34 -0.52 -13.73 16 10 C 0.17 3.78 5.05 -3.71 -0.02 3.76 16 11 C -0.15 -2.88 5.77 -26.62 -0.15 -3.04 16 12 C 0.17 2.84 2.47 -67.89 -0.17 2.67 16 13 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 14 N -0.70 -10.73 4.16 -53.76 -0.22 -10.96 16 15 C 0.52 8.14 7.87 -10.98 -0.09 8.06 16 16 O -0.53 -10.34 16.16 -14.36 -0.23 -10.58 16 17 C 0.04 0.46 5.22 36.01 0.19 0.65 16 18 O -0.28 -3.85 9.67 -39.49 -0.38 -4.23 16 19 C 0.13 1.43 6.69 -39.23 -0.26 1.17 16 20 C -0.12 -1.23 9.98 -39.44 -0.39 -1.62 16 21 C -0.11 -1.02 10.02 -39.53 -0.40 -1.42 16 22 C 0.05 0.54 7.30 -39.42 -0.29 0.25 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.48 16 24 C -0.11 -1.02 10.02 -39.53 -0.40 -1.41 16 25 C -0.18 -1.76 9.04 -39.44 -0.36 -2.11 16 26 C 0.08 1.19 3.36 -26.62 -0.09 1.10 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 O -0.57 -7.85 13.21 -35.23 -0.47 -8.32 16 29 C 0.12 2.13 5.84 -3.73 -0.02 2.10 16 30 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 32 H 0.02 0.48 7.74 -51.93 -0.40 0.07 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 5.68 6.87 -40.82 -0.28 5.40 16 36 H 0.10 0.97 7.65 -51.93 -0.40 0.57 16 37 H 0.09 0.84 7.67 -51.93 -0.40 0.44 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.14 1.07 6.30 -52.49 -0.33 0.74 16 42 H 0.37 3.59 9.08 45.56 0.41 4.01 16 43 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.02 0.39 6.64 -51.93 -0.34 0.04 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -31.77 366.97 -8.27 -40.05 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.94 Total: 8.61 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.67 Total: 3.50 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.12 Total: -48.67 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.08 Total: -23.13 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.77 -8.27 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100105025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.120 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds