Wall clock time and date at job start Tue Mar 31 2020 20:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48503 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46788 * 299.99592 * 3 2 1 6 6 H 1.48492 * 109.47254 * 59.99845 * 3 2 1 7 7 C 1.38821 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99661 * 197.36915 * 7 2 1 9 9 N 1.36936 * 119.99703 * 17.37126 * 7 2 1 10 10 C 1.46923 * 120.63454 * 27.67193 * 9 7 2 11 11 C 1.53188 * 108.77761 * 126.41172 * 10 9 7 12 12 C 1.53034 * 109.31461 * 54.63198 * 11 10 9 13 13 H 1.09005 * 109.46144 * 178.62397 * 12 11 10 14 14 N 1.46505 * 109.45779 * 58.65851 * 12 11 10 15 15 C 1.34777 * 120.00194 * 84.97063 * 14 12 11 16 16 O 1.21284 * 119.99982 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00010 * 179.97438 * 15 14 12 18 18 O 1.42896 * 109.47068 * 180.02562 * 17 15 14 19 19 C 1.35948 * 116.99832 * 180.02562 * 18 17 15 20 20 C 1.38710 * 120.02702 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.96821 * 179.69475 * 20 19 18 22 22 C 1.38458 * 120.02933 * 0.28171 * 21 20 19 23 23 F 1.35101 * 119.97095 * 179.97438 * 22 21 20 24 24 C 1.38450 * 120.06153 * 359.97438 * 22 21 20 25 25 C 1.38153 * 120.03069 * 359.97438 * 24 22 21 26 26 C 1.53042 * 109.53000 * 298.64309 * 12 11 10 27 27 H 1.08995 * 109.49371 * 301.40754 * 26 12 11 28 28 O 1.42898 * 109.49618 * 181.30868 * 26 12 11 29 29 C 1.46925 * 120.62866 * 207.68859 * 9 7 2 30 30 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58672 * 6.62152 * 10 9 7 32 32 H 1.09003 * 109.70420 * 246.26932 * 10 9 7 33 33 H 1.08999 * 109.49719 * 294.68062 * 11 10 9 34 34 H 1.09001 * 109.52566 * 174.60500 * 11 10 9 35 35 H 0.97003 * 119.99825 * 264.96957 * 14 12 11 36 36 H 1.09006 * 109.46802 * 60.00440 * 17 15 14 37 37 H 1.08997 * 109.47020 * 300.00493 * 17 15 14 38 38 H 1.07997 * 120.01450 * 359.96940 * 20 19 18 39 39 H 1.07994 * 119.98718 * 180.24980 * 21 20 19 40 40 H 1.08005 * 119.98764 * 179.97438 * 24 22 21 41 41 H 1.08002 * 120.01835 * 180.02562 * 25 24 22 42 42 H 0.96700 * 113.99443 * 179.97438 * 28 26 12 43 43 H 1.09004 * 109.58525 * 353.37561 * 29 9 7 44 44 H 1.08996 * 109.58709 * 113.80029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 0.2280 -2.3349 -1.2740 11 6 0.5009 -3.3054 -2.4275 12 6 0.8187 -4.6903 -1.8593 13 1 0.9894 -5.3886 -2.6787 14 7 -0.3092 -5.1557 -1.0484 15 6 -1.3507 -5.7773 -1.6362 16 8 -1.3539 -5.9518 -2.8364 17 6 -2.5106 -6.2566 -0.8020 18 8 -3.4803 -6.8787 -1.6474 19 6 -4.5977 -7.3690 -1.0480 20 6 -5.5797 -7.9860 -1.8090 21 6 -6.7117 -8.4894 -1.1978 22 6 -6.8690 -8.3732 0.1729 23 9 -7.9768 -8.8655 0.7692 24 6 -5.8921 -7.7530 0.9329 25 6 -4.7585 -7.2495 0.3245 26 6 2.0743 -4.6100 -0.9879 27 1 2.9081 -4.2402 -1.5846 28 8 2.3878 -5.9093 -0.4824 29 6 1.8192 -3.6547 0.1818 30 1 -0.4850 0.8400 -0.0004 31 1 0.0988 -1.3267 -1.6676 32 1 -0.6757 -2.6397 -0.7462 33 1 1.3496 -2.9479 -3.0106 34 1 -0.3795 -3.3678 -3.0671 35 1 -0.3065 -5.0165 -0.0884 36 1 -2.9651 -5.4082 -0.2903 37 1 -2.1553 -6.9773 -0.0656 38 1 -5.4573 -8.0766 -2.8782 39 1 -7.4746 -8.9734 -1.7895 40 1 -6.0162 -7.6626 2.0020 41 1 -3.9963 -6.7661 0.9177 42 1 3.1746 -5.9334 0.0794 43 1 2.7399 -3.5173 0.7488 44 1 1.0467 -4.0685 0.8299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100105025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:51 Heat of formation + Delta-G solvation = -133.613475 kcal Electronic energy + Delta-G solvation = -29110.241104 eV Core-core repulsion = 24749.503009 eV Total energy + Delta-G solvation = -4360.738095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.82579 -41.59099 -40.83903 -39.35731 -38.04040 -36.92715 -35.61742 -33.60906 -32.38788 -32.03508 -30.86426 -30.21581 -28.84463 -27.08213 -24.35155 -23.92543 -23.62549 -23.26210 -22.00666 -20.35219 -19.47062 -18.97921 -18.44476 -18.37142 -17.95009 -17.46291 -17.33202 -16.83931 -16.66487 -16.51987 -15.87367 -15.82572 -15.67028 -15.51163 -15.27893 -14.86892 -14.67829 -14.42513 -14.29971 -13.99077 -13.86616 -13.54169 -13.34852 -13.33609 -13.21358 -13.00800 -12.76458 -12.36525 -12.14557 -12.01385 -11.95484 -11.90469 -11.83113 -11.29189 -11.02829 -10.90427 -10.50793 -10.20285 -10.09236 -9.16399 -8.70259 -7.88934 -5.33939 0.14350 0.17083 1.46866 1.49650 1.51028 1.53429 1.59183 2.49606 2.54397 2.62977 3.15418 3.28019 3.31257 3.53563 3.66716 3.75408 3.79929 3.90463 3.99606 4.05660 4.10494 4.16627 4.26096 4.31339 4.39089 4.53551 4.55762 4.69039 4.88017 4.89553 4.94992 5.04859 5.10109 5.12543 5.15706 5.19554 5.41682 5.47634 5.64146 5.66107 5.71648 6.22097 6.36381 6.49836 6.90471 7.13123 7.16113 7.82326 8.32460 9.17151 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.002417 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.881339 B =11581.301302 C =12499.613860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.046 4.046 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.141 4.141 12 C 0.171 3.829 13 H 0.074 0.926 14 N -0.694 5.694 15 C 0.513 3.487 16 O -0.572 6.572 17 C 0.043 3.957 18 O -0.311 6.311 19 C 0.106 3.894 20 C -0.131 4.131 21 C -0.109 4.109 22 C 0.041 3.959 23 F -0.148 7.148 24 C -0.111 4.111 25 C -0.182 4.182 26 C 0.096 3.904 27 H 0.069 0.931 28 O -0.570 6.570 29 C 0.118 3.882 30 H 0.249 0.751 31 H 0.052 0.948 32 H 0.008 0.992 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.411 0.589 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.396 0.604 43 H 0.069 0.931 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -16.384 2.446 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.390 4.390 8 H 0.090 0.910 9 N -0.327 5.327 10 C 0.058 3.942 11 C -0.181 4.181 12 C 0.066 3.934 13 H 0.092 0.908 14 N -0.347 5.347 15 C 0.299 3.701 16 O -0.451 6.451 17 C -0.035 4.035 18 O -0.224 6.224 19 C 0.061 3.939 20 C -0.150 4.150 21 C -0.128 4.128 22 C 0.022 3.978 23 F -0.127 7.127 24 C -0.129 4.129 25 C -0.200 4.200 26 C 0.035 3.965 27 H 0.087 0.913 28 O -0.377 6.377 29 C -0.008 4.008 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.248 0.752 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.246 0.754 43 H 0.088 0.912 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.037 -16.568 1.099 18.035 hybrid contribution 0.514 1.468 0.889 1.792 sum -6.523 -15.100 1.987 16.568 Atomic orbital electron populations 1.70162 1.06545 1.25738 1.55109 1.25720 0.95950 1.01312 1.01253 0.85300 0.78846 0.80307 0.76520 1.18947 1.22218 1.22141 1.19515 0.93093 0.85718 1.40708 0.91026 1.44178 1.35766 1.01935 1.50776 1.20489 0.88176 0.97110 0.88411 1.22399 1.01407 0.95223 0.99120 1.20705 0.84615 0.94838 0.93283 0.90776 1.45701 1.18959 1.58021 1.12039 1.20499 0.83814 0.77540 0.88224 1.90699 1.79989 1.57786 1.16616 1.22619 0.87739 1.00520 0.92601 1.86138 1.28022 1.71881 1.36377 1.19347 0.87047 0.95309 0.92238 1.20484 0.92443 1.00752 1.01330 1.21151 0.98521 1.00245 0.92885 1.17824 0.85580 1.02556 0.91861 1.91475 1.51008 1.86106 1.84123 1.21200 0.92528 0.97418 1.01788 1.21405 1.00596 1.04948 0.93066 1.22327 0.95446 0.83375 0.95375 0.91274 1.86448 1.52027 1.28461 1.70792 1.21689 0.99003 0.86021 0.94101 0.94195 0.92922 0.97347 0.91245 0.92477 0.75188 0.86646 0.85557 0.83492 0.82043 0.82355 0.82144 0.75381 0.91226 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.87 11.19 21.65 0.24 -51.63 16 2 C -0.05 -2.43 4.91 84.86 0.42 -2.01 16 3 Si 0.96 42.56 29.59 68.60 2.03 44.59 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.26 -13.03 9.59 84.04 0.81 -12.22 16 8 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 9 N -0.60 -26.70 2.99 -699.16 -2.09 -28.79 16 10 C 0.18 8.20 5.05 86.36 0.44 8.64 16 11 C -0.14 -5.29 5.77 30.67 0.18 -5.11 16 12 C 0.17 5.56 2.47 45.02 0.11 5.67 16 13 H 0.07 2.58 7.58 -2.38 -0.02 2.56 16 14 N -0.69 -20.35 4.16 -442.39 -1.84 -22.19 16 15 C 0.51 15.71 7.87 87.66 0.69 16.40 16 16 O -0.57 -22.55 16.16 16.00 0.26 -22.29 16 17 C 0.04 0.94 5.22 71.24 0.37 1.31 16 18 O -0.31 -8.19 9.67 -73.92 -0.71 -8.90 16 19 C 0.11 2.29 6.69 22.49 0.15 2.44 16 20 C -0.13 -2.57 9.98 22.36 0.22 -2.34 16 21 C -0.11 -1.85 10.02 22.30 0.22 -1.63 16 22 C 0.04 0.75 7.30 22.37 0.16 0.92 16 23 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 24 C -0.11 -1.81 10.02 22.30 0.22 -1.58 16 25 C -0.18 -3.10 9.04 22.36 0.20 -2.90 16 26 C 0.10 2.80 3.36 30.66 0.10 2.90 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 O -0.57 -13.80 13.21 -148.98 -1.97 -15.77 16 29 C 0.12 3.99 5.84 86.35 0.50 4.50 16 30 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.05 2.76 6.04 -2.39 -0.01 2.74 16 32 H 0.01 0.39 7.74 -2.39 -0.02 0.37 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.41 10.72 6.87 -92.71 -0.64 10.08 16 36 H 0.12 2.06 7.65 -2.38 -0.02 2.05 16 37 H 0.13 1.89 7.67 -2.39 -0.02 1.87 16 38 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.16 1.96 6.30 -2.91 -0.02 1.94 16 42 H 0.40 6.06 9.08 -74.06 -0.67 5.39 16 43 H 0.07 2.23 7.93 -2.38 -0.02 2.21 16 44 H 0.03 1.02 6.64 -2.39 -0.02 1.00 16 Total: -1.00 -69.19 366.97 1.24 -67.94 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.25 Total: 24.20 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 4.80 Total: 14.98 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.69 Total: -102.61 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -2.42 Total: -46.96 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -69.19 1.24 -67.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100105025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.670 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds