Wall clock time and date at job start Tue Mar 31 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35238 * 126.69205 * 2 1 4 4 C 1.42055 * 103.95425 * 180.14924 * 3 2 1 5 5 N 1.39360 * 126.89741 * 179.85584 * 4 3 2 6 6 C 1.34769 * 120.00056 * 359.71225 * 5 4 3 7 7 O 1.21358 * 120.00351 * 359.97438 * 6 5 4 8 8 C 1.49378 * 120.00059 * 180.02562 * 6 5 4 9 9 O 1.21357 * 119.99878 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00145 * 180.02562 * 8 6 5 11 11 C 1.46503 * 119.99903 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.46398 * 35.02038 * 11 10 8 13 13 C 1.53043 * 109.44585 * 275.05344 * 11 10 8 14 14 C 1.53626 * 109.24075 * 178.49827 * 13 11 10 15 15 N 1.46923 * 108.54225 * 54.85598 * 14 13 11 16 16 C 1.36939 * 120.63131 * 126.36996 * 15 14 13 17 17 H 1.08008 * 119.99778 * 332.04528 * 16 15 14 18 18 C 1.38804 * 120.00453 * 151.77067 * 16 15 14 19 19 N 1.31620 * 120.00038 * 343.04343 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 163.04087 * 18 16 15 21 21 H 1.48491 * 109.47171 * 60.00079 * 20 18 16 22 22 H 1.48504 * 109.46780 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47267 * 299.99706 * 20 18 16 24 24 C 1.46930 * 118.74105 * 306.09576 * 15 14 13 25 25 C 1.53038 * 109.46123 * 154.99554 * 11 10 8 26 26 H 1.09003 * 109.50150 * 61.41221 * 25 11 10 27 27 O 1.42908 * 109.49644 * 301.31829 * 25 11 10 28 28 N 1.30750 * 106.20246 * 359.59144 * 4 3 2 29 29 O 1.20911 * 111.46707 * 0.26227 * 28 4 3 30 30 H 1.08998 * 109.47405 * 180.32813 * 1 2 3 31 31 H 1.09001 * 109.46862 * 300.32946 * 1 2 3 32 32 H 1.09002 * 109.47025 * 60.32369 * 1 2 3 33 33 H 1.07999 * 128.02582 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99514 * 179.70847 * 5 4 3 35 35 H 0.96998 * 119.99996 * 359.97438 * 10 8 6 36 36 H 1.09005 * 109.49625 * 298.57233 * 13 11 10 37 37 H 1.08996 * 109.49590 * 58.63857 * 13 11 10 38 38 H 1.08996 * 109.73770 * 295.12222 * 14 13 11 39 39 H 1.09001 * 109.66362 * 174.55077 * 14 13 11 40 40 H 0.96999 * 120.00551 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58824 * 173.64798 * 24 15 14 42 42 H 1.09000 * 109.58168 * 294.07398 * 24 15 14 43 43 H 0.96702 * 113.99863 * 180.15798 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 -0.0036 5 7 4.8277 1.2398 -0.0078 6 6 4.8191 2.5875 -0.0147 7 8 3.7643 3.1876 -0.0177 8 6 6.1080 3.3426 -0.0198 9 8 7.1628 2.7425 -0.0173 10 7 6.0994 4.6903 -0.0261 11 6 7.3635 5.4308 -0.0306 12 1 8.1018 4.8854 -0.6183 13 6 7.8684 5.5855 1.4059 14 6 9.2125 6.3294 1.3927 15 7 9.0364 7.5995 0.6753 16 6 9.3965 8.7854 1.2576 17 1 9.3793 8.8862 2.3329 18 6 9.7889 9.8562 0.4664 19 7 10.1375 9.6556 -0.7868 20 14 9.8225 11.5822 1.1802 21 1 10.7601 11.6238 2.3309 22 1 10.2734 12.5399 0.1387 23 1 8.4599 11.9550 1.6382 24 6 8.4724 7.5724 -0.6811 25 6 7.1419 6.8140 -0.6468 26 1 6.4220 7.3692 -0.0455 27 8 6.6414 6.6687 -1.9775 28 7 3.4765 -0.7636 0.0037 29 8 2.3082 -1.0752 0.0057 30 1 -0.3634 -1.0276 0.0059 31 1 -0.3633 0.5190 0.8870 32 1 -0.3633 0.5088 -0.8929 33 1 2.0304 2.1262 0.0004 34 1 5.6708 0.7601 -0.0057 35 1 5.2563 5.1699 -0.0277 36 1 7.1417 6.1523 1.9879 37 1 8.0031 4.6002 1.8522 38 1 9.9633 5.7241 0.8850 39 1 9.5314 6.5288 2.4158 40 1 10.4121 10.4038 -1.3397 41 1 8.3030 8.5921 -1.0268 42 1 9.1643 7.0663 -1.3544 43 1 6.4798 7.5075 -2.4307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100109700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:10 Heat of formation + Delta-G solvation = -22.274461 kcal Electronic energy + Delta-G solvation = -29147.686751 eV Core-core repulsion = 24811.696640 eV Total energy + Delta-G solvation = -4335.990111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.20866 -41.05835 -39.28421 -37.90940 -36.19959 -35.35070 -34.55689 -33.95996 -32.33017 -32.24043 -29.72793 -28.97166 -28.18722 -26.34379 -24.88999 -23.60337 -22.53425 -21.91791 -21.31256 -20.51942 -19.76470 -18.46222 -18.02466 -17.82521 -17.07211 -16.99151 -16.65634 -16.26176 -16.08810 -15.75625 -14.91804 -14.48960 -14.27212 -14.02716 -13.91752 -13.87190 -13.71133 -13.67204 -13.36276 -12.86818 -12.80427 -12.34195 -12.17992 -12.09244 -11.86973 -11.71550 -11.58166 -11.30382 -10.89055 -10.85949 -10.54942 -10.30428 -10.10324 -9.99262 -9.75497 -9.65951 -9.45757 -9.24343 -9.06205 -8.60871 -6.85727 -5.93094 -3.37340 0.81254 1.25943 1.77196 2.07173 2.77849 3.04790 3.22882 3.30730 3.36950 3.37570 3.95168 4.21035 4.35894 4.50130 4.53189 4.69369 4.86509 4.98956 5.14203 5.21330 5.25857 5.32401 5.40303 5.45450 5.56104 5.79884 5.85067 5.96295 5.97800 5.99067 6.26125 6.29182 6.43090 6.56884 6.62108 6.80403 7.03043 7.12099 7.36899 7.43606 7.66679 7.85791 7.96072 8.01760 8.29547 9.04708 9.67175 10.22818 11.15341 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.002125 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.917503 B =13175.895292 C =13423.905706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.227 4.227 4 C 0.246 3.754 5 N -0.608 5.608 6 C 0.521 3.479 7 O -0.493 6.493 8 C 0.513 3.487 9 O -0.517 6.517 10 N -0.675 5.675 11 C 0.159 3.841 12 H 0.095 0.905 13 C -0.141 4.141 14 C 0.145 3.855 15 N -0.589 5.589 16 C -0.258 4.258 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.148 3.852 25 C 0.071 3.929 26 H 0.056 0.944 27 O -0.573 6.573 28 N -0.384 5.384 29 O 0.101 5.899 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.192 0.808 34 H 0.432 0.568 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.257 0.743 41 H 0.096 0.904 42 H 0.031 0.969 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 -15.276 0.665 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.250 4.250 4 C -0.003 4.003 5 N -0.261 5.261 6 C 0.303 3.697 7 O -0.364 6.364 8 C 0.291 3.709 9 O -0.393 6.393 10 N -0.325 5.325 11 C 0.056 3.944 12 H 0.113 0.887 13 C -0.182 4.182 14 C 0.018 3.982 15 N -0.312 5.312 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.021 3.979 25 C 0.010 3.990 26 H 0.074 0.926 27 O -0.378 6.378 28 N -0.099 5.099 29 O 0.039 5.961 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.209 0.791 34 H 0.271 0.729 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.049 0.951 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.834 -16.727 0.692 23.741 hybrid contribution -0.168 2.231 0.124 2.240 sum -17.002 -14.497 0.816 22.358 Atomic orbital electron populations 1.20367 0.83560 1.04739 1.04442 1.24463 0.96562 0.85710 1.01922 1.22721 0.89101 1.02312 1.10846 1.20474 0.88141 0.88976 1.02726 1.42114 1.07156 1.06021 1.70837 1.20587 0.90937 0.81646 0.76557 1.90703 1.32313 1.68059 1.45330 1.19417 0.87998 0.83985 0.79486 1.90805 1.31467 1.68344 1.48696 1.45958 1.11773 1.04557 1.70243 1.21273 0.84181 0.91286 0.97645 0.88723 1.22540 1.00519 1.00776 0.94333 1.21029 0.92289 0.87725 0.97134 1.44028 1.71405 1.01547 1.14264 1.19162 1.39507 0.88428 0.91656 0.91317 1.25097 0.98514 0.99317 0.96620 1.70005 1.46668 1.30482 1.07423 0.86327 0.78018 0.84032 0.78144 1.20733 1.21568 1.20938 1.21437 0.88893 1.00372 0.87171 1.23003 0.98985 0.94389 0.82573 0.92637 1.86404 1.87526 1.35527 1.28371 1.74085 0.97604 1.12959 1.25239 1.84815 1.10368 1.32398 1.68547 0.89741 0.88920 0.88914 0.79111 0.72914 0.75324 0.91583 0.91641 0.95616 0.91834 0.93345 0.88574 0.95063 0.77414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.09 16 2 C -0.02 -0.19 7.48 -35.37 -0.26 -0.46 16 3 C -0.23 -2.40 9.79 -39.19 -0.38 -2.79 16 4 C 0.25 3.00 8.17 -154.93 -1.27 1.74 16 5 N -0.61 -7.27 5.41 -11.86 -0.06 -7.34 16 6 C 0.52 6.78 7.85 -11.62 -0.09 6.69 16 7 O -0.49 -6.70 13.75 5.49 0.08 -6.62 16 8 C 0.51 7.43 7.85 -11.62 -0.09 7.34 16 9 O -0.52 -8.54 16.14 5.49 0.09 -8.45 16 10 N -0.67 -9.80 4.91 -54.22 -0.27 -10.07 16 11 C 0.16 2.68 2.11 -67.89 -0.14 2.54 16 12 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 13 C -0.14 -2.37 5.67 -26.38 -0.15 -2.52 16 14 C 0.15 2.89 6.54 -3.49 -0.02 2.86 16 15 N -0.59 -13.79 2.99 -172.06 -0.51 -14.31 16 16 C -0.26 -6.67 9.58 -15.06 -0.14 -6.82 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -24.85 11.18 55.49 0.62 -24.23 16 20 Si 0.91 20.66 29.59 -169.99 -5.03 15.63 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.15 3.27 4.93 -3.71 -0.02 3.25 16 25 C 0.07 1.26 3.14 -26.62 -0.08 1.18 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -9.32 13.16 -35.23 -0.46 -9.78 16 28 N -0.38 -4.72 12.10 31.18 0.38 -4.34 16 29 O 0.10 1.05 11.19 17.06 0.19 1.24 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.19 2.02 6.22 -52.49 -0.33 1.69 16 34 H 0.43 4.69 8.29 -40.82 -0.34 4.35 16 35 H 0.41 5.45 8.07 -40.82 -0.33 5.12 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.10 2.33 6.04 -51.93 -0.31 2.01 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.38 4.89 9.08 45.56 0.41 5.31 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -31.17 364.78 -6.49 -37.66 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.63 Total: 11.99 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -2.37 Total: 13.12 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.15 Total: -60.29 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.11 Total: -23.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.17 -6.49 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.383 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds