Wall clock time and date at job start Tue Mar 31 2020 21:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35238 * 126.69205 * 2 1 4 4 C 1.42055 * 103.95425 * 180.14924 * 3 2 1 5 5 N 1.39360 * 126.89741 * 179.85584 * 4 3 2 6 6 C 1.34769 * 120.00056 * 359.71225 * 5 4 3 7 7 O 1.21358 * 120.00351 * 359.97438 * 6 5 4 8 8 C 1.49378 * 120.00059 * 180.02562 * 6 5 4 9 9 O 1.21357 * 119.99878 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00145 * 180.02562 * 8 6 5 11 11 C 1.46503 * 119.99903 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.46398 * 35.02038 * 11 10 8 13 13 C 1.53043 * 109.44585 * 275.05344 * 11 10 8 14 14 C 1.53626 * 109.24075 * 178.49827 * 13 11 10 15 15 N 1.46923 * 108.54225 * 54.85598 * 14 13 11 16 16 C 1.36939 * 120.63131 * 126.36996 * 15 14 13 17 17 H 1.08008 * 119.99778 * 332.04528 * 16 15 14 18 18 C 1.38804 * 120.00453 * 151.77067 * 16 15 14 19 19 N 1.31620 * 120.00038 * 343.04343 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 163.04087 * 18 16 15 21 21 H 1.48491 * 109.47171 * 60.00079 * 20 18 16 22 22 H 1.48504 * 109.46780 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47267 * 299.99706 * 20 18 16 24 24 C 1.46930 * 118.74105 * 306.09576 * 15 14 13 25 25 C 1.53038 * 109.46123 * 154.99554 * 11 10 8 26 26 H 1.09003 * 109.50150 * 61.41221 * 25 11 10 27 27 O 1.42908 * 109.49644 * 301.31829 * 25 11 10 28 28 N 1.30750 * 106.20246 * 359.59144 * 4 3 2 29 29 O 1.20911 * 111.46707 * 0.26227 * 28 4 3 30 30 H 1.08998 * 109.47405 * 180.32813 * 1 2 3 31 31 H 1.09001 * 109.46862 * 300.32946 * 1 2 3 32 32 H 1.09002 * 109.47025 * 60.32369 * 1 2 3 33 33 H 1.07999 * 128.02582 * 0.02562 * 3 2 1 34 34 H 0.97003 * 119.99514 * 179.70847 * 5 4 3 35 35 H 0.96998 * 119.99996 * 359.97438 * 10 8 6 36 36 H 1.09005 * 109.49625 * 298.57233 * 13 11 10 37 37 H 1.08996 * 109.49590 * 58.63857 * 13 11 10 38 38 H 1.08996 * 109.73770 * 295.12222 * 14 13 11 39 39 H 1.09001 * 109.66362 * 174.55077 * 14 13 11 40 40 H 0.96999 * 120.00551 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.58824 * 173.64798 * 24 15 14 42 42 H 1.09000 * 109.58168 * 294.07398 * 24 15 14 43 43 H 0.96702 * 113.99863 * 180.15798 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 -0.0036 5 7 4.8277 1.2398 -0.0078 6 6 4.8191 2.5875 -0.0147 7 8 3.7643 3.1876 -0.0177 8 6 6.1080 3.3426 -0.0198 9 8 7.1628 2.7425 -0.0173 10 7 6.0994 4.6903 -0.0261 11 6 7.3635 5.4308 -0.0306 12 1 8.1018 4.8854 -0.6183 13 6 7.8684 5.5855 1.4059 14 6 9.2125 6.3294 1.3927 15 7 9.0364 7.5995 0.6753 16 6 9.3965 8.7854 1.2576 17 1 9.3793 8.8862 2.3329 18 6 9.7889 9.8562 0.4664 19 7 10.1375 9.6556 -0.7868 20 14 9.8225 11.5822 1.1802 21 1 10.7601 11.6238 2.3309 22 1 10.2734 12.5399 0.1387 23 1 8.4599 11.9550 1.6382 24 6 8.4724 7.5724 -0.6811 25 6 7.1419 6.8140 -0.6468 26 1 6.4220 7.3692 -0.0455 27 8 6.6414 6.6687 -1.9775 28 7 3.4765 -0.7636 0.0037 29 8 2.3082 -1.0752 0.0057 30 1 -0.3634 -1.0276 0.0059 31 1 -0.3633 0.5190 0.8870 32 1 -0.3633 0.5088 -0.8929 33 1 2.0304 2.1262 0.0004 34 1 5.6708 0.7601 -0.0057 35 1 5.2563 5.1699 -0.0277 36 1 7.1417 6.1523 1.9879 37 1 8.0031 4.6002 1.8522 38 1 9.9633 5.7241 0.8850 39 1 9.5314 6.5288 2.4158 40 1 10.4121 10.4038 -1.3397 41 1 8.3030 8.5921 -1.0268 42 1 9.1643 7.0663 -1.3544 43 1 6.4798 7.5075 -2.4307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100109700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:09 Heat of formation + Delta-G solvation = -46.590817 kcal Electronic energy + Delta-G solvation = -29148.741188 eV Core-core repulsion = 24811.696640 eV Total energy + Delta-G solvation = -4337.044548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.03583 -42.17103 -40.53756 -39.30399 -37.19653 -36.89266 -35.92515 -34.60949 -33.98862 -33.18271 -31.39088 -30.54525 -28.71471 -27.74615 -26.36454 -24.66443 -23.99839 -23.39343 -22.24992 -21.67157 -21.25038 -19.70197 -18.85848 -18.72575 -18.69378 -18.14363 -17.96252 -17.37060 -17.18364 -17.08559 -16.58980 -15.79009 -15.58921 -15.49549 -15.17625 -14.99856 -14.80691 -14.44674 -14.39365 -13.97554 -13.88992 -13.60087 -13.42618 -13.37271 -13.07249 -13.05870 -12.89181 -12.62630 -12.56340 -12.30673 -12.14688 -12.05538 -11.89431 -11.43813 -11.05350 -10.91228 -10.60759 -10.47628 -10.33619 -10.11271 -8.76385 -7.90836 -5.37837 -0.19935 0.48450 0.72620 1.15770 1.50044 1.51299 1.58259 1.95753 2.03885 2.23965 2.49979 2.99467 3.10846 3.25340 3.29145 3.60797 3.72222 3.83588 3.99511 4.00474 4.28419 4.30903 4.37304 4.43294 4.57303 4.60655 4.77378 4.80180 4.83429 4.88332 5.03880 5.06047 5.14404 5.17170 5.27200 5.32062 5.51457 5.57505 5.64494 6.03802 6.33559 6.35490 6.69924 6.80743 7.10248 7.16899 7.77803 8.29940 9.15598 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030038 B = 0.002125 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.917503 B =13175.895292 C =13423.905706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.000 4.000 3 C -0.249 4.249 4 C 0.226 3.774 5 N -0.602 5.602 6 C 0.530 3.470 7 O -0.497 6.497 8 C 0.517 3.483 9 O -0.538 6.538 10 N -0.667 5.667 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.126 4.126 14 C 0.141 3.859 15 N -0.605 5.605 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.275 1.275 24 C 0.157 3.843 25 C 0.090 3.910 26 H 0.068 0.932 27 O -0.574 6.574 28 N -0.404 5.404 29 O 0.099 5.901 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.191 0.809 34 H 0.435 0.565 35 H 0.420 0.580 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.069 0.931 40 H 0.252 0.748 41 H 0.072 0.928 42 H 0.000 1.000 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.398 -15.858 1.573 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.272 4.272 4 C -0.022 4.022 5 N -0.255 5.255 6 C 0.311 3.689 7 O -0.369 6.369 8 C 0.296 3.704 9 O -0.415 6.415 10 N -0.318 5.318 11 C 0.063 3.937 12 H 0.091 0.909 13 C -0.166 4.166 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.201 1.201 24 C 0.030 3.970 25 C 0.029 3.971 26 H 0.086 0.914 27 O -0.381 6.381 28 N -0.119 5.119 29 O 0.038 5.962 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.275 0.725 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.444 -17.337 1.610 26.101 hybrid contribution 0.592 2.311 -0.183 2.392 sum -18.852 -15.027 1.427 24.150 Atomic orbital electron populations 1.20662 0.80044 1.06450 1.05946 1.25209 0.98129 0.84304 0.98785 1.22804 0.88797 1.02935 1.12668 1.20734 0.88566 0.89343 1.03560 1.41984 1.07575 1.05646 1.70289 1.20099 0.90012 0.81881 0.76862 1.90706 1.32112 1.68237 1.45867 1.19597 0.88320 0.83801 0.78657 1.90802 1.32453 1.68736 1.49510 1.45710 1.11234 1.04629 1.70249 1.20971 0.84727 0.90736 0.97276 0.90910 1.22343 0.98737 1.01068 0.94463 1.21141 0.93970 0.86536 0.96812 1.44276 1.71825 1.02183 1.14653 1.19503 1.38553 0.89409 0.92030 0.90924 1.25823 0.98841 1.02658 0.97015 1.70162 1.48179 1.30994 1.08625 0.85329 0.78183 0.79690 0.77147 1.20327 1.22283 1.20060 1.21228 0.90453 0.99209 0.86128 1.22591 0.96546 0.94371 0.83569 0.91443 1.86386 1.87052 1.36885 1.27815 1.74081 0.98662 1.13097 1.26097 1.84786 1.10124 1.33076 1.68259 0.87978 0.87217 0.87278 0.79152 0.72549 0.74242 0.90500 0.90275 0.96670 0.91249 0.93918 0.90988 0.98219 0.75634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 71.24 0.74 0.43 16 2 C 0.00 -0.01 7.48 24.99 0.19 0.18 16 3 C -0.25 -4.92 9.79 22.52 0.22 -4.70 16 4 C 0.23 5.34 8.17 134.16 1.10 6.44 16 5 N -0.60 -14.01 5.41 -310.82 -1.68 -15.69 16 6 C 0.53 13.21 7.85 87.25 0.68 13.90 16 7 O -0.50 -12.78 13.75 -3.27 -0.04 -12.83 16 8 C 0.52 14.43 7.85 87.25 0.68 15.12 16 9 O -0.54 -17.42 16.14 -3.27 -0.05 -17.47 16 10 N -0.67 -18.40 4.91 -443.81 -2.18 -20.58 16 11 C 0.17 5.49 2.11 45.02 0.10 5.59 16 12 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16 13 C -0.13 -4.06 5.67 30.82 0.17 -3.89 16 14 C 0.14 5.60 6.54 86.51 0.57 6.16 16 15 N -0.60 -28.57 2.99 -698.27 -2.09 -30.66 16 16 C -0.27 -13.72 9.58 84.03 0.81 -12.91 16 17 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 18 C -0.05 -2.52 4.92 84.86 0.42 -2.11 16 19 N -0.93 -52.72 11.18 21.65 0.24 -52.47 16 20 Si 0.97 42.62 29.59 68.60 2.03 44.65 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.16 7.06 4.93 86.36 0.43 7.48 16 25 C 0.09 3.13 3.14 30.67 0.10 3.23 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 O -0.57 -18.11 13.16 -148.98 -1.96 -20.07 16 28 N -0.40 -9.62 12.10 -56.35 -0.68 -10.30 16 29 O 0.10 1.92 11.19 71.20 0.80 2.72 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.12 16 31 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.19 3.74 6.22 -2.91 -0.02 3.73 16 34 H 0.43 9.31 8.29 -92.71 -0.77 8.55 16 35 H 0.42 10.26 8.07 -92.71 -0.75 9.52 16 36 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 40 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.07 3.58 6.04 -2.39 -0.01 3.57 16 42 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.39 9.79 9.08 -74.06 -0.67 9.12 16 Total: -1.00 -67.53 364.78 -0.51 -68.03 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.09 Total: 29.76 kcal Atomic # 6 Polarization: 28.72 SS G_CDS: 6.20 Total: 34.92 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -6.39 Total: -129.70 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.26 Total: -47.65 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.53 -0.51 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds