Wall clock time and date at job start Tue Mar 31 2020 21:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35233 * 126.69132 * 2 1 4 4 C 1.42051 * 103.95761 * 179.72331 * 3 2 1 5 5 N 1.39359 * 126.90007 * 180.26254 * 4 3 2 6 6 C 1.34774 * 120.00137 * 359.97438 * 5 4 3 7 7 O 1.21357 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.49377 * 120.00162 * 180.02562 * 6 5 4 9 9 O 1.21361 * 120.00009 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00070 * 179.97438 * 8 6 5 11 11 C 1.46502 * 119.99983 * 180.02562 * 10 8 6 12 12 H 1.09003 * 109.45762 * 324.97510 * 11 10 8 13 13 C 1.53041 * 109.46014 * 84.93572 * 11 10 8 14 14 C 1.53187 * 109.31164 * 181.38702 * 13 11 10 15 15 N 1.46930 * 108.77618 * 305.36388 * 14 13 11 16 16 C 1.36937 * 120.63135 * 233.63160 * 15 14 13 17 17 H 1.07997 * 119.99689 * 27.66107 * 16 15 14 18 18 C 1.38804 * 120.00082 * 207.66528 * 16 15 14 19 19 N 1.31626 * 120.00145 * 17.35995 * 18 16 15 20 20 Si 1.86796 * 120.00039 * 197.36244 * 18 16 15 21 21 H 1.48501 * 109.47248 * 90.00364 * 20 18 16 22 22 H 1.48510 * 109.47149 * 209.99887 * 20 18 16 23 23 H 1.48494 * 109.47459 * 329.99777 * 20 18 16 24 24 C 1.46923 * 118.73747 * 53.61057 * 15 14 13 25 25 C 1.53040 * 109.45924 * 205.00638 * 11 10 8 26 26 H 1.08993 * 109.49533 * 298.59425 * 25 11 10 27 27 O 1.42902 * 109.50075 * 58.66171 * 25 11 10 28 28 N 1.30748 * 106.20194 * 0.25616 * 4 3 2 29 29 O 1.20918 * 111.46780 * 0.02562 * 28 4 3 30 30 H 1.08999 * 109.46980 * 90.00173 * 1 2 3 31 31 H 1.09002 * 109.47039 * 210.00047 * 1 2 3 32 32 H 1.08995 * 109.47021 * 330.00316 * 1 2 3 33 33 H 1.08003 * 128.02539 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99742 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00213 * 0.02562 * 10 8 6 36 36 H 1.09004 * 109.49641 * 301.33498 * 13 11 10 37 37 H 1.08996 * 109.49899 * 61.43464 * 13 11 10 38 38 H 1.09003 * 109.58770 * 185.57636 * 14 13 11 39 39 H 1.09007 * 109.58991 * 65.14998 * 14 13 11 40 40 H 0.96997 * 120.00247 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58615 * 186.60581 * 24 15 14 42 42 H 1.08998 * 109.70382 * 66.25087 * 24 15 14 43 43 H 0.96698 * 113.99985 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0067 5 7 4.8276 1.2399 0.0144 6 6 4.8190 2.5877 0.0156 7 8 3.7642 3.1878 0.0095 8 6 6.1078 3.3428 0.0233 9 8 7.1627 2.7428 0.0280 10 7 6.0992 4.6905 0.0240 11 6 7.3632 5.4311 0.0310 12 1 8.0989 4.8882 0.6244 13 6 7.8750 5.5798 -1.4036 14 6 9.2137 6.3242 -1.3893 15 7 9.0396 7.5968 -0.6758 16 6 9.4017 8.7803 -1.2617 17 1 9.3894 8.8763 -2.3373 18 6 9.7845 9.8566 -0.4732 19 7 10.1303 9.6628 0.7820 20 14 9.8090 11.5800 -1.1932 21 1 8.4850 12.2207 -0.9890 22 1 10.8578 12.3845 -0.5162 23 1 10.1038 11.5052 -2.6466 24 6 8.4693 7.5753 0.6780 25 6 7.1388 6.8168 0.6406 26 1 6.4215 7.3693 0.0339 27 8 6.6320 6.6771 1.9694 28 7 3.4765 -0.7635 0.0042 29 8 2.3082 -1.0752 -0.0032 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 2.0304 2.1262 -0.0004 34 1 5.6707 0.7603 0.0189 35 1 5.2561 5.1702 0.0199 36 1 8.0123 4.5926 -1.8450 37 1 7.1511 6.1442 -1.9914 38 1 9.5340 6.5199 -2.4127 39 1 9.9631 5.7188 -0.8792 40 1 10.3975 10.4149 1.3332 41 1 8.2983 8.5965 1.0187 42 1 9.1570 7.0735 1.3586 43 1 6.4664 7.5177 2.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100109701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:14 Heat of formation + Delta-G solvation = -22.385959 kcal Electronic energy + Delta-G solvation = -29149.441818 eV Core-core repulsion = 24813.446871 eV Total energy + Delta-G solvation = -4335.994946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.20891 -41.06054 -39.29016 -37.91683 -36.20152 -35.36108 -34.55958 -33.96404 -32.33358 -32.24953 -29.73394 -28.98796 -28.18708 -26.34887 -24.89271 -23.60748 -22.53636 -21.92396 -21.31466 -20.52286 -19.76223 -18.46420 -18.02685 -17.82787 -17.07313 -16.99804 -16.65873 -16.26371 -16.08996 -15.76045 -14.92512 -14.49324 -14.27541 -14.02401 -13.92193 -13.88301 -13.71489 -13.66647 -13.36759 -12.86743 -12.81013 -12.34922 -12.18349 -12.09535 -11.87436 -11.71885 -11.57592 -11.31194 -10.89916 -10.87223 -10.54694 -10.27623 -10.10642 -9.98893 -9.76306 -9.66219 -9.45932 -9.24406 -9.06397 -8.61385 -6.86668 -5.93367 -3.37301 0.81015 1.25881 1.76977 2.07100 2.77462 3.04581 3.22618 3.29733 3.37364 3.38424 3.95291 4.20864 4.35596 4.49773 4.52224 4.68505 4.86777 4.98293 5.15765 5.20736 5.25452 5.31886 5.40091 5.45080 5.55748 5.79196 5.85582 5.96012 5.97394 5.98957 6.26017 6.28936 6.42795 6.56524 6.61951 6.80049 7.02657 7.11873 7.36823 7.43417 7.66941 7.85541 7.95845 8.01495 8.29076 9.04423 9.66967 10.22373 11.15142 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.002126 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.622321 B =13168.192716 C =13418.158624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.226 4.226 4 C 0.246 3.754 5 N -0.608 5.608 6 C 0.521 3.479 7 O -0.493 6.493 8 C 0.513 3.487 9 O -0.517 6.517 10 N -0.675 5.675 11 C 0.159 3.841 12 H 0.095 0.905 13 C -0.141 4.141 14 C 0.145 3.855 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.148 3.852 25 C 0.072 3.928 26 H 0.056 0.944 27 O -0.573 6.573 28 N -0.384 5.384 29 O 0.100 5.900 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.192 0.808 34 H 0.432 0.568 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.256 0.744 41 H 0.096 0.904 42 H 0.031 0.969 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.831 -15.327 -0.694 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.249 4.249 4 C -0.003 4.003 5 N -0.261 5.261 6 C 0.303 3.697 7 O -0.364 6.364 8 C 0.291 3.709 9 O -0.393 6.393 10 N -0.325 5.325 11 C 0.056 3.944 12 H 0.113 0.887 13 C -0.182 4.182 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.021 3.979 25 C 0.011 3.989 26 H 0.074 0.926 27 O -0.378 6.378 28 N -0.099 5.099 29 O 0.038 5.962 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.209 0.791 34 H 0.271 0.729 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.839 -16.782 -0.720 23.784 hybrid contribution -0.194 2.235 -0.126 2.247 sum -17.032 -14.547 -0.846 22.415 Atomic orbital electron populations 1.20364 0.83555 1.04852 1.04318 1.24462 0.96565 0.85714 1.01928 1.22734 0.89098 1.02285 1.10809 1.20470 0.88148 0.88990 1.02731 1.42113 1.07159 1.06019 1.70836 1.20586 0.90933 0.81646 0.76555 1.90703 1.32312 1.68062 1.45333 1.19417 0.87999 0.83985 0.79483 1.90807 1.31463 1.68347 1.48692 1.45955 1.11771 1.04555 1.70247 1.21273 0.84171 0.91272 0.97675 0.88713 1.22464 1.00514 1.00798 0.94385 1.20943 0.92378 0.87680 0.97175 1.44023 1.71196 1.01556 1.14479 1.19214 1.39493 0.88334 0.91597 0.91239 1.25089 0.98620 0.99294 0.96596 1.70023 1.46945 1.30180 1.07400 0.86247 0.77374 0.84301 0.78593 1.21361 1.21680 1.20317 1.21435 0.88853 1.00415 0.87212 1.23001 0.98911 0.94389 0.82645 0.92646 1.86401 1.87249 1.35468 1.28704 1.74090 0.97602 1.12955 1.25212 1.84811 1.10364 1.32381 1.68595 0.89195 0.89657 0.88761 0.79118 0.72913 0.75321 0.91597 0.91594 0.91836 0.95642 0.93405 0.88576 0.95048 0.77410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.09 16 2 C -0.02 -0.19 7.47 -35.38 -0.26 -0.46 16 3 C -0.23 -2.39 9.79 -39.19 -0.38 -2.78 16 4 C 0.25 3.00 8.17 -154.93 -1.27 1.73 16 5 N -0.61 -7.26 5.41 -11.86 -0.06 -7.33 16 6 C 0.52 6.77 7.85 -11.62 -0.09 6.68 16 7 O -0.49 -6.69 13.75 5.49 0.08 -6.61 16 8 C 0.51 7.42 7.85 -11.62 -0.09 7.33 16 9 O -0.52 -8.53 16.14 5.49 0.09 -8.44 16 10 N -0.67 -9.79 4.91 -54.22 -0.27 -10.05 16 11 C 0.16 2.68 2.12 -67.89 -0.14 2.53 16 12 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 13 C -0.14 -2.37 5.65 -26.61 -0.15 -2.52 16 14 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 15 N -0.59 -13.79 2.99 -172.32 -0.52 -14.30 16 16 C -0.26 -6.64 9.58 -15.06 -0.14 -6.79 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -24.86 11.19 55.49 0.62 -24.23 16 20 Si 0.91 20.68 29.59 -169.99 -5.03 15.65 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.15 3.26 4.94 -3.71 -0.02 3.24 16 25 C 0.07 1.26 3.14 -26.61 -0.08 1.18 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -9.31 13.16 -35.23 -0.46 -9.78 16 28 N -0.38 -4.71 12.10 31.18 0.38 -4.33 16 29 O 0.10 1.05 11.19 17.05 0.19 1.24 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.19 2.01 6.22 -52.48 -0.33 1.68 16 34 H 0.43 4.68 8.29 -40.82 -0.34 4.34 16 35 H 0.41 5.44 8.07 -40.82 -0.33 5.11 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.10 2.33 6.03 -51.93 -0.31 2.02 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.38 4.89 9.08 45.56 0.41 5.31 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -31.19 364.74 -6.49 -37.68 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.63 Total: 11.91 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -2.37 Total: 13.11 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.15 Total: -60.25 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.11 Total: -23.59 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.19 -6.49 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.293 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds