Wall clock time and date at job start Tue Mar 31 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35233 * 126.69132 * 2 1 4 4 C 1.42051 * 103.95761 * 179.72331 * 3 2 1 5 5 N 1.39359 * 126.90007 * 180.26254 * 4 3 2 6 6 C 1.34774 * 120.00137 * 359.97438 * 5 4 3 7 7 O 1.21357 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.49377 * 120.00162 * 180.02562 * 6 5 4 9 9 O 1.21361 * 120.00009 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00070 * 179.97438 * 8 6 5 11 11 C 1.46502 * 119.99983 * 180.02562 * 10 8 6 12 12 H 1.09003 * 109.45762 * 324.97510 * 11 10 8 13 13 C 1.53041 * 109.46014 * 84.93572 * 11 10 8 14 14 C 1.53187 * 109.31164 * 181.38702 * 13 11 10 15 15 N 1.46930 * 108.77618 * 305.36388 * 14 13 11 16 16 C 1.36937 * 120.63135 * 233.63160 * 15 14 13 17 17 H 1.07997 * 119.99689 * 27.66107 * 16 15 14 18 18 C 1.38804 * 120.00082 * 207.66528 * 16 15 14 19 19 N 1.31626 * 120.00145 * 17.35995 * 18 16 15 20 20 Si 1.86796 * 120.00039 * 197.36244 * 18 16 15 21 21 H 1.48501 * 109.47248 * 90.00364 * 20 18 16 22 22 H 1.48510 * 109.47149 * 209.99887 * 20 18 16 23 23 H 1.48494 * 109.47459 * 329.99777 * 20 18 16 24 24 C 1.46923 * 118.73747 * 53.61057 * 15 14 13 25 25 C 1.53040 * 109.45924 * 205.00638 * 11 10 8 26 26 H 1.08993 * 109.49533 * 298.59425 * 25 11 10 27 27 O 1.42902 * 109.50075 * 58.66171 * 25 11 10 28 28 N 1.30748 * 106.20194 * 0.25616 * 4 3 2 29 29 O 1.20918 * 111.46780 * 0.02562 * 28 4 3 30 30 H 1.08999 * 109.46980 * 90.00173 * 1 2 3 31 31 H 1.09002 * 109.47039 * 210.00047 * 1 2 3 32 32 H 1.08995 * 109.47021 * 330.00316 * 1 2 3 33 33 H 1.08003 * 128.02539 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99742 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00213 * 0.02562 * 10 8 6 36 36 H 1.09004 * 109.49641 * 301.33498 * 13 11 10 37 37 H 1.08996 * 109.49899 * 61.43464 * 13 11 10 38 38 H 1.09003 * 109.58770 * 185.57636 * 14 13 11 39 39 H 1.09007 * 109.58991 * 65.14998 * 14 13 11 40 40 H 0.96997 * 120.00247 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58615 * 186.60581 * 24 15 14 42 42 H 1.08998 * 109.70382 * 66.25087 * 24 15 14 43 43 H 0.96698 * 113.99985 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0067 5 7 4.8276 1.2399 0.0144 6 6 4.8190 2.5877 0.0156 7 8 3.7642 3.1878 0.0095 8 6 6.1078 3.3428 0.0233 9 8 7.1627 2.7428 0.0280 10 7 6.0992 4.6905 0.0240 11 6 7.3632 5.4311 0.0310 12 1 8.0989 4.8882 0.6244 13 6 7.8750 5.5798 -1.4036 14 6 9.2137 6.3242 -1.3893 15 7 9.0396 7.5968 -0.6758 16 6 9.4017 8.7803 -1.2617 17 1 9.3894 8.8763 -2.3373 18 6 9.7845 9.8566 -0.4732 19 7 10.1303 9.6628 0.7820 20 14 9.8090 11.5800 -1.1932 21 1 8.4850 12.2207 -0.9890 22 1 10.8578 12.3845 -0.5162 23 1 10.1038 11.5052 -2.6466 24 6 8.4693 7.5753 0.6780 25 6 7.1388 6.8168 0.6406 26 1 6.4215 7.3693 0.0339 27 8 6.6320 6.6771 1.9694 28 7 3.4765 -0.7635 0.0042 29 8 2.3082 -1.0752 -0.0032 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 2.0304 2.1262 -0.0004 34 1 5.6707 0.7603 0.0189 35 1 5.2561 5.1702 0.0199 36 1 8.0123 4.5926 -1.8450 37 1 7.1511 6.1442 -1.9914 38 1 9.5340 6.5199 -2.4127 39 1 9.9631 5.7188 -0.8792 40 1 10.3975 10.4149 1.3332 41 1 8.2983 8.5965 1.0187 42 1 9.1570 7.0735 1.3586 43 1 6.4664 7.5177 2.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100109701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:13 Heat of formation + Delta-G solvation = -46.728815 kcal Electronic energy + Delta-G solvation = -29150.497403 eV Core-core repulsion = 24813.446871 eV Total energy + Delta-G solvation = -4337.050532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.03505 -42.17184 -40.54325 -39.30900 -37.19735 -36.90036 -35.92781 -34.61277 -33.99885 -33.18159 -31.39936 -30.55899 -28.71420 -27.75109 -26.36553 -24.66842 -23.99958 -23.39898 -22.24987 -21.67237 -21.24646 -19.70362 -18.85935 -18.72891 -18.69612 -18.14682 -17.96380 -17.37104 -17.18326 -17.08997 -16.59331 -15.79056 -15.59243 -15.50101 -15.18026 -15.00267 -14.80697 -14.45063 -14.40211 -13.96734 -13.89621 -13.60455 -13.42767 -13.37471 -13.07832 -13.06147 -12.89467 -12.67360 -12.54466 -12.29998 -12.14407 -12.01878 -11.89089 -11.43730 -11.05715 -10.91312 -10.61642 -10.48307 -10.33734 -10.11190 -8.77333 -7.91167 -5.37812 -0.20022 0.48454 0.72554 1.15851 1.49021 1.50841 1.59261 1.95705 2.03667 2.23803 2.49616 2.99400 3.10520 3.25331 3.28962 3.60404 3.72084 3.83166 3.98520 4.00246 4.28077 4.30924 4.37894 4.43073 4.57469 4.60818 4.77145 4.79964 4.84012 4.88239 5.03869 5.06370 5.14215 5.16972 5.26809 5.31906 5.51317 5.57475 5.64621 6.03733 6.33264 6.35419 6.69855 6.80545 7.09952 7.16731 7.77575 8.29496 9.15505 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.002126 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.622321 B =13168.192716 C =13418.158624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.001 4.001 3 C -0.249 4.249 4 C 0.226 3.774 5 N -0.602 5.602 6 C 0.530 3.470 7 O -0.497 6.497 8 C 0.517 3.483 9 O -0.538 6.538 10 N -0.667 5.667 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.126 4.126 14 C 0.142 3.858 15 N -0.605 5.605 16 C -0.263 4.263 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.269 1.269 24 C 0.156 3.844 25 C 0.090 3.910 26 H 0.068 0.932 27 O -0.574 6.574 28 N -0.404 5.404 29 O 0.099 5.901 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.191 0.809 34 H 0.435 0.565 35 H 0.420 0.580 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.072 0.928 42 H 0.000 1.000 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.415 -15.935 -1.629 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.272 4.272 4 C -0.022 4.022 5 N -0.255 5.255 6 C 0.311 3.689 7 O -0.369 6.369 8 C 0.296 3.704 9 O -0.415 6.415 10 N -0.318 5.318 11 C 0.063 3.937 12 H 0.091 0.909 13 C -0.166 4.166 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.393 4.393 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.226 1.226 23 H -0.194 1.194 24 C 0.029 3.971 25 C 0.029 3.971 26 H 0.086 0.914 27 O -0.381 6.381 28 N -0.119 5.119 29 O 0.037 5.963 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.275 0.725 35 H 0.258 0.742 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.456 -17.417 -1.664 26.166 hybrid contribution 0.569 2.322 0.189 2.398 sum -18.887 -15.095 -1.475 24.223 Atomic orbital electron populations 1.20659 0.80047 1.06453 1.05933 1.25207 0.98130 0.84309 0.98800 1.22819 0.88793 1.02912 1.12633 1.20730 0.88573 0.89356 1.03560 1.41984 1.07576 1.05643 1.70290 1.20100 0.90011 0.81881 0.76860 1.90706 1.32111 1.68240 1.45867 1.19597 0.88319 0.83801 0.78655 1.90803 1.32448 1.68739 1.49507 1.45707 1.11232 1.04626 1.70251 1.20970 0.84720 0.90717 0.97305 0.90903 1.22269 0.98748 1.01095 0.94512 1.21054 0.94053 0.86479 0.96858 1.44270 1.71612 1.02203 1.14862 1.19540 1.38519 0.89305 0.91941 0.90896 1.25810 0.98963 1.02605 0.97003 1.70176 1.48471 1.30715 1.08615 0.85255 0.77013 0.79991 0.78091 1.20863 1.22573 1.19386 1.21226 0.90425 0.99249 0.86160 1.22589 0.96471 0.94377 0.83637 0.91440 1.86384 1.86772 1.36828 1.28149 1.74086 0.98656 1.13093 1.26072 1.84781 1.10122 1.33057 1.68310 0.87337 0.87869 0.87303 0.79150 0.72548 0.74239 0.90225 0.90497 0.91247 0.96691 0.93936 0.91007 0.98201 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 71.24 0.74 0.43 16 2 C 0.00 -0.01 7.47 24.99 0.19 0.18 16 3 C -0.25 -4.90 9.79 22.52 0.22 -4.68 16 4 C 0.23 5.33 8.17 134.16 1.10 6.43 16 5 N -0.60 -13.99 5.41 -310.81 -1.68 -15.67 16 6 C 0.53 13.19 7.85 87.25 0.68 13.88 16 7 O -0.50 -12.77 13.75 -3.27 -0.04 -12.81 16 8 C 0.52 14.41 7.85 87.25 0.68 15.09 16 9 O -0.54 -17.39 16.14 -3.28 -0.05 -17.44 16 10 N -0.67 -18.36 4.91 -443.80 -2.18 -20.54 16 11 C 0.17 5.48 2.12 45.02 0.10 5.58 16 12 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16 13 C -0.13 -4.06 5.65 30.67 0.17 -3.89 16 14 C 0.14 5.59 6.52 86.36 0.56 6.15 16 15 N -0.60 -28.55 2.99 -699.09 -2.09 -30.65 16 16 C -0.26 -13.61 9.58 84.03 0.81 -12.80 16 17 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 18 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 19 N -0.93 -52.75 11.19 21.65 0.24 -52.51 16 20 Si 0.97 42.66 29.59 68.60 2.03 44.69 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 C 0.16 7.04 4.94 86.36 0.43 7.46 16 25 C 0.09 3.13 3.14 30.67 0.10 3.22 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 O -0.57 -18.10 13.16 -148.98 -1.96 -20.06 16 28 N -0.40 -9.60 12.10 -56.34 -0.68 -10.28 16 29 O 0.10 1.92 11.19 71.20 0.80 2.71 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.19 3.74 6.22 -2.91 -0.02 3.72 16 34 H 0.43 9.30 8.29 -92.71 -0.77 8.53 16 35 H 0.42 10.24 8.07 -92.71 -0.75 9.49 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 39 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.07 3.58 6.03 -2.39 -0.01 3.56 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.39 9.79 9.08 -74.06 -0.67 9.12 16 Total: -1.00 -67.57 364.74 -0.52 -68.09 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -1.09 Total: 29.55 kcal Atomic # 6 Polarization: 28.72 SS G_CDS: 6.19 Total: 34.92 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -6.39 Total: -129.65 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.26 Total: -47.61 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.57 -0.52 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100109701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds